gentoo resync : 29.06.2020

14 files changed, 24 insertions, 39 deletions

diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index 3d43ab08a4eb..0f6d61d4463b 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ )
 RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12
 _md5_=bccaeef3292f6df307fc14fb5a2a74b2
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 9d2dbe5aee08..1156dd9bd73f 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3-r1 b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
index 84630ef72cf4..1dd84e6535c8 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.0.3-r1
+++ b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
@@ -1,13 +1,13 @@
 DEFINED_PHASES=configure prepare pretend setup
-DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
 EAPI=6
 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/
 IUSE=+mpi openmp misc-haskell
 KEYWORDS=~amd64 ~x86
 LICENSE=abyss
-RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi )
+RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi )
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz
 _eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	2477ebe553d3e4d2c606191fe6c33602	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=390c105831f179d395708c7ba4778ecc
+_md5_=14d874a3152b5d75a6be53f68e24fd47
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9
index 038c70624aaf..f25ae867de63 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr
 REQUIRED_USE=minimal? ( !graphviz )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=be22a76392a6e5c121e4b6d388045faa
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
index 31f7f1274ab5..7d888888867f 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=2470d7ecf1b6ff1902a8d74057748480
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index e1a147aa5b14..ea6ecfb4fc3f 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=8f7c4053ffbec76cfad29cca2d99847b
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
index eb9cb3ad4627..5591e5339a14 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=9caec4e5b47cbf306a1689903f2a018a
diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4
index aaa802f2c804..62a7b72c5637 100644
--- a/metadata/md5-cache/sci-biology/diya-1.0_rc4
+++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)]
 SLOT=0
 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=5d4639d7c08c43e2c2208492508fd56c
diff --git a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
index e3d478338308..b43dc9f10d3a 100644
--- a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
+++ b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
@@ -1,7 +1,7 @@
 DEFINED_PHASES=configure install
 DEPEND=mpi? ( virtual/mpi )
 DESCRIPTION=Inference of RNA alignments
-EAPI=6
+EAPI=7
 HOMEPAGE=http://infernal.janelia.org/
 IUSE=mpi
 KEYWORDS=amd64 x86
@@ -9,4 +9,5 @@ LICENSE=GPL-3
 RDEPEND=mpi? ( virtual/mpi )
 SLOT=0
 SRC_URI=ftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz
-_md5_=a3cee86cfd4ecbef4e39563bc652a64b
+_eclasses_=multilib	2477ebe553d3e4d2c606191fe6c33602	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=a3b1f788e8f5b38e41b3a9e38f91fe88
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index 706dd8b00d62..3bfd048cf515 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -1,7 +1,7 @@
+BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare
-DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A Markov Cluster Algorithm implementation
-EAPI=6
+EAPI=7
 HOMEPAGE=http://micans.org/mcl/
 IUSE=+blast
 KEYWORDS=~amd64 ~x86
@@ -9,4 +9,4 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
 _eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	2477ebe553d3e4d2c606191fe6c33602	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=3429c68609b6c70e047d577379f68f97
+_md5_=9779366f51f2fea08274072a9a019159
diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1
index 793985885507..91bb06718743 100644
--- a/metadata/md5-cache/sci-biology/poa-2-r1
+++ b/metadata/md5-cache/sci-biology/poa-2-r1
@@ -1,11 +1,10 @@
-DEFINED_PHASES=compile install postinst prepare
+DEFINED_PHASES=compile configure install postinst
 DESCRIPTION=Fast multiple sequence alignments using partial-order graphs
-EAPI=5
+EAPI=7
 HOMEPAGE=http://bioinfo.mbi.ucla.edu/poa/
-IUSE=static-libs
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=ab2bece5c6a9c68d3f07555c962d382d
+_eclasses_=multilib	2477ebe553d3e4d2c606191fe6c33602	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=d7bb9c94a05320cd21ff72a8beb56406
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
deleted file mode 100644
index 7938cb23c810..000000000000
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)]
-DESCRIPTION=RNA secondary structure prediction and comparison
-EAPI=5
-HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/
-IUSE=doc openmp python static-libs python_targets_python2_7
-KEYWORDS=amd64 ppc x86
-LICENSE=vienna-rna
-RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-lang/perl:=[-build(-)]
-REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
-SLOT=0
-SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	autotools-utils	95db0904ad0f62535e18e5ccb67cce5e	desktop	7fd20552ce4cc97e8acb132a499a7dd8	distutils-r1	44725b3eb803b8abcd6978759c231210	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	8386b016a2b3bbefa88443fdaa898057	python-utils-r1	ace0a9a129fcfeaae542c0d15c07f36a	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=1e58c830b49ced05ae9960fcc2dead13
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
index d82c646fdfb8..b05944042c12 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? (
 REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	autotools-utils	95db0904ad0f62535e18e5ccb67cce5e	desktop	7fd20552ce4cc97e8acb132a499a7dd8	distutils-r1	44725b3eb803b8abcd6978759c231210	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	8386b016a2b3bbefa88443fdaa898057	python-utils-r1	ace0a9a129fcfeaae542c0d15c07f36a	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	b5891c9326ad2e7905c011d44c927c34	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	autotools-utils	95db0904ad0f62535e18e5ccb67cce5e	desktop	7fd20552ce4cc97e8acb132a499a7dd8	distutils-r1	44725b3eb803b8abcd6978759c231210	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	2477ebe553d3e4d2c606191fe6c33602	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	8386b016a2b3bbefa88443fdaa898057	python-utils-r1	ace0a9a129fcfeaae542c0d15c07f36a	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b2a6486af275e75c6365ab7eeba1e0bd
diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2
index 063894d236f3..202f9f785ee1 100644
--- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2
+++ b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2
@@ -1,13 +1,12 @@
-DEFINED_PHASES=compile configure install prepare
+DEFINED_PHASES=compile configure install
 DEPEND=net-libs/libtirpc x11-libs/libXt !x11-terms/terminator
 DESCRIPTION=The Celera de novo whole-genome shotgun DNA sequence assembler, aka CABOG
-EAPI=6
+EAPI=7
 HOMEPAGE=https://sourceforge.net/projects/wgs-assembler/
-IUSE=static-libs
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
 RDEPEND=net-libs/libtirpc x11-libs/libXt !x11-terms/terminator app-shells/tcsh dev-perl/Log-Log4perl
 SLOT=0
 SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	2477ebe553d3e4d2c606191fe6c33602	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=cb4182fc2947f2a3efa19db296a6a76f
+_eclasses_=multilib	2477ebe553d3e4d2c606191fe6c33602	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=8de6fdef210cdf37e56e086c61983865