From 90c88731bd036e5698b281fbc0a5f3aa4c9983ac Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 29 Jun 2020 11:38:31 +0100 Subject: gentoo resync : 29.06.2020 --- metadata/md5-cache/sci-biology/GBrowse-2.48-r1 | 2 +- metadata/md5-cache/sci-biology/Manifest.gz | Bin 28550 -> 28407 bytes metadata/md5-cache/sci-biology/abyss-2.0.3-r1 | 13 ------------- metadata/md5-cache/sci-biology/abyss-2.0.3-r2 | 13 +++++++++++++ metadata/md5-cache/sci-biology/bioperl-1.6.9 | 2 +- metadata/md5-cache/sci-biology/bioperl-db-1.6.9 | 2 +- .../md5-cache/sci-biology/bioperl-network-1.6.9 | 2 +- metadata/md5-cache/sci-biology/bioperl-run-1.6.9 | 2 +- metadata/md5-cache/sci-biology/diya-1.0_rc4 | 2 +- metadata/md5-cache/sci-biology/infernal-1.0.2-r1 | 5 +++-- metadata/md5-cache/sci-biology/mcl-14.137 | 6 +++--- metadata/md5-cache/sci-biology/poa-2-r1 | 9 ++++----- metadata/md5-cache/sci-biology/vienna-rna-2.1.1 | 14 -------------- metadata/md5-cache/sci-biology/vienna-rna-2.1.8 | 2 +- metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 | 9 ++++----- 15 files changed, 34 insertions(+), 49 deletions(-) delete mode 100644 metadata/md5-cache/sci-biology/abyss-2.0.3-r1 create mode 100644 metadata/md5-cache/sci-biology/abyss-2.0.3-r2 delete mode 100644 metadata/md5-cache/sci-biology/vienna-rna-2.1.1 (limited to 'metadata/md5-cache/sci-biology') diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 index 3d43ab08a4eb..0f6d61d4463b 100644 --- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 +++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 @@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ ) RDEPEND=!=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15 SLOT=0 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12 +_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker 8ee8c1a2f31437d1766aac890d07a7f4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12 _md5_=bccaeef3292f6df307fc14fb5a2a74b2 diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz index 9d2dbe5aee08..1156dd9bd73f 100644 Binary files a/metadata/md5-cache/sci-biology/Manifest.gz and b/metadata/md5-cache/sci-biology/Manifest.gz differ diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3-r1 b/metadata/md5-cache/sci-biology/abyss-2.0.3-r1 deleted file mode 100644 index 84630ef72cf4..000000000000 --- a/metadata/md5-cache/sci-biology/abyss-2.0.3-r1 +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=configure prepare pretend setup -DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler -EAPI=6 -HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/ -IUSE=+mpi openmp misc-haskell -KEYWORDS=~amd64 ~x86 -LICENSE=abyss -RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) -SLOT=0 -SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz -_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 libtool f143db5a74ccd9ca28c1234deffede96 multilib 2477ebe553d3e4d2c606191fe6c33602 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb -_md5_=390c105831f179d395708c7ba4778ecc diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 new file mode 100644 index 000000000000..1dd84e6535c8 --- /dev/null +++ b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 @@ -0,0 +1,13 @@ +DEFINED_PHASES=configure prepare pretend setup +DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler +EAPI=6 +HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/ +IUSE=+mpi openmp misc-haskell +KEYWORDS=~amd64 ~x86 +LICENSE=abyss +RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) +SLOT=0 +SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz +_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 libtool f143db5a74ccd9ca28c1234deffede96 multilib 2477ebe553d3e4d2c606191fe6c33602 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb +_md5_=14d874a3152b5d75a6be53f68e24fd47 diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9 index 038c70624aaf..f25ae867de63 100644 --- a/metadata/md5-cache/sci-biology/bioperl-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9 @@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr REQUIRED_USE=minimal? ( !graphviz ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker 8ee8c1a2f31437d1766aac890d07a7f4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=be22a76392a6e5c121e4b6d388045faa diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 index 31f7f1274ab5..7d888888867f 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/ RESTRICT=test SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker 8ee8c1a2f31437d1766aac890d07a7f4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=2470d7ecf1b6ff1902a8d74057748480 diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 index e1a147aa5b14..ea6ecfb4fc3f 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build RESTRICT=!test? ( test ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker 8ee8c1a2f31437d1766aac890d07a7f4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8f7c4053ffbec76cfad29cca2d99847b diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 index eb9cb3ad4627..5591e5339a14 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl RESTRICT=test SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker 8ee8c1a2f31437d1766aac890d07a7f4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=9caec4e5b47cbf306a1689903f2a018a diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4 index aaa802f2c804..62a7b72c5637 100644 --- a/metadata/md5-cache/sci-biology/diya-1.0_rc4 +++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)] SLOT=0 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker 8ee8c1a2f31437d1766aac890d07a7f4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=5d4639d7c08c43e2c2208492508fd56c diff --git a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 index e3d478338308..b43dc9f10d3a 100644 --- a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 +++ b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 @@ -1,7 +1,7 @@ DEFINED_PHASES=configure install DEPEND=mpi? ( virtual/mpi ) DESCRIPTION=Inference of RNA alignments -EAPI=6 +EAPI=7 HOMEPAGE=http://infernal.janelia.org/ IUSE=mpi KEYWORDS=amd64 x86 @@ -9,4 +9,5 @@ LICENSE=GPL-3 RDEPEND=mpi? ( virtual/mpi ) SLOT=0 SRC_URI=ftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz -_md5_=a3cee86cfd4ecbef4e39563bc652a64b +_eclasses_=multilib 2477ebe553d3e4d2c606191fe6c33602 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb +_md5_=a3b1f788e8f5b38e41b3a9e38f91fe88 diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index 706dd8b00d62..3bfd048cf515 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -1,7 +1,7 @@ +BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure prepare -DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Markov Cluster Algorithm implementation -EAPI=6 +EAPI=7 HOMEPAGE=http://micans.org/mcl/ IUSE=+blast KEYWORDS=~amd64 ~x86 @@ -9,4 +9,4 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz _eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 libtool f143db5a74ccd9ca28c1234deffede96 multilib 2477ebe553d3e4d2c606191fe6c33602 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb -_md5_=3429c68609b6c70e047d577379f68f97 +_md5_=9779366f51f2fea08274072a9a019159 diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1 index 793985885507..91bb06718743 100644 --- a/metadata/md5-cache/sci-biology/poa-2-r1 +++ b/metadata/md5-cache/sci-biology/poa-2-r1 @@ -1,11 +1,10 @@ -DEFINED_PHASES=compile install postinst prepare +DEFINED_PHASES=compile configure install postinst DESCRIPTION=Fast multiple sequence alignments using partial-order graphs -EAPI=5 +EAPI=7 HOMEPAGE=http://bioinfo.mbi.ucla.edu/poa/ -IUSE=static-libs KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf -_md5_=ab2bece5c6a9c68d3f07555c962d382d +_eclasses_=multilib 2477ebe553d3e4d2c606191fe6c33602 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb +_md5_=d7bb9c94a05320cd21ff72a8beb56406 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 deleted file mode 100644 index 7938cb23c810..000000000000 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 +++ /dev/null @@ -1,14 +0,0 @@ -DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] -DESCRIPTION=RNA secondary structure prediction and comparison -EAPI=5 -HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/ -IUSE=doc openmp python static-libs python_targets_python2_7 -KEYWORDS=amd64 ppc x86 -LICENSE=vienna-rna -RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-lang/perl:=[-build(-)] -REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) -SLOT=0 -SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz -_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop 7fd20552ce4cc97e8acb132a499a7dd8 distutils-r1 44725b3eb803b8abcd6978759c231210 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 8386b016a2b3bbefa88443fdaa898057 python-utils-r1 ace0a9a129fcfeaae542c0d15c07f36a toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba -_md5_=1e58c830b49ced05ae9960fcc2dead13 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 index d82c646fdfb8..b05944042c12 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz -_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop 7fd20552ce4cc97e8acb132a499a7dd8 distutils-r1 44725b3eb803b8abcd6978759c231210 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 8386b016a2b3bbefa88443fdaa898057 python-utils-r1 ace0a9a129fcfeaae542c0d15c07f36a toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba +_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop 7fd20552ce4cc97e8acb132a499a7dd8 distutils-r1 44725b3eb803b8abcd6978759c231210 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 2477ebe553d3e4d2c606191fe6c33602 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 8386b016a2b3bbefa88443fdaa898057 python-utils-r1 ace0a9a129fcfeaae542c0d15c07f36a toolchain-funcs 605c126bed8d87e4378d5ff1645330cb unpacker 8ee8c1a2f31437d1766aac890d07a7f4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba _md5_=b2a6486af275e75c6365ab7eeba1e0bd diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 index 063894d236f3..202f9f785ee1 100644 --- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 +++ b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 @@ -1,13 +1,12 @@ -DEFINED_PHASES=compile configure install prepare +DEFINED_PHASES=compile configure install DEPEND=net-libs/libtirpc x11-libs/libXt !x11-terms/terminator DESCRIPTION=The Celera de novo whole-genome shotgun DNA sequence assembler, aka CABOG -EAPI=6 +EAPI=7 HOMEPAGE=https://sourceforge.net/projects/wgs-assembler/ -IUSE=static-libs KEYWORDS=amd64 x86 LICENSE=GPL-2 RDEPEND=net-libs/libtirpc x11-libs/libXt !x11-terms/terminator app-shells/tcsh dev-perl/Log-Log4perl SLOT=0 SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2 -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 2477ebe553d3e4d2c606191fe6c33602 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf -_md5_=cb4182fc2947f2a3efa19db296a6a76f +_eclasses_=multilib 2477ebe553d3e4d2c606191fe6c33602 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb +_md5_=8de6fdef210cdf37e56e086c61983865 -- cgit v1.2.3