diff options
Diffstat (limited to 'sci-chemistry/autodock/autodock-4.2.6.ebuild')
| -rw-r--r-- | sci-chemistry/autodock/autodock-4.2.6.ebuild | 68 |
1 files changed, 40 insertions, 28 deletions
diff --git a/sci-chemistry/autodock/autodock-4.2.6.ebuild b/sci-chemistry/autodock/autodock-4.2.6.ebuild index 6cfe76fbbfd0..b4dce2e439b4 100644 --- a/sci-chemistry/autodock/autodock-4.2.6.ebuild +++ b/sci-chemistry/autodock/autodock-4.2.6.ebuild @@ -1,38 +1,56 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -PYTHON_COMPAT=( python2_7 ) +# Tests require python2 +#PYTHON_COMPAT=( python2_7 ) -inherit autotools eutils python-any-r1 versionator +inherit autotools readme.gentoo-r1 #python-any-r1 MY_PN="autodocksuite" MY_P="${MY_PN}-${PV}" DESCRIPTION="A suite of automated docking tools" HOMEPAGE="http://autodock.scripps.edu/" -SRC_URI="http://autodock.scripps.edu/downloads/autodock-registration/tars/dist$(delete_all_version_separators)/${MY_P}-src.tar.gz" +SRC_URI="http://autodock.scripps.edu/downloads/autodock-registration/tars/dist$(ver_rs 1- '')/${MY_P}-src.tar.gz" LICENSE="GPL-2" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="examples openmp test" -RESTRICT="!test? ( test )" + +IUSE="examples openmp" #test +#RESTRICT="!test? ( test )" + +# False positives caused by nested configure scripts +QA_CONFIGURE_OPTIONS=".*" RDEPEND="" -DEPEND="test? ( ${PYTHON_DEPS} )" +DEPEND="" +#DEPEND="test? ( ${PYTHON_DEPS} )" S="${WORKDIR}/src" +DISABLE_AUTOFORMATTING="yes" +DOC_CONTENTS=" +The AutoDock development team requests all users to fill out the +registration form at: + +http://autodock.scripps.edu/downloads/autodock-registration + +The number of unique users of AutoDock is used by Prof. Arthur J. +Olson and the Scripps Research Institude to support grant +applications. +" + PATCHES=( "${FILESDIR}"/${P}-buildsystem.patch ) src_prepare() { - local i + default - epatch "${PATCHES[@]}" + local i sed \ -e "s/\tcsh/\tsh/" \ @@ -58,15 +76,15 @@ src_compile() { emake -C autogrid } -src_test() { - elog "Testing autodock" - cd "${S}/autodock/Tests" || die - cp ../*.dat . || die - ${EPYTHON} test_autodock4.py || die "AutoDock tests failed." - einfo "Testing autogrid" - cd "${S}/autogrid/Tests" || die - ${EPYTHON} test_autogrid4.py || die "AutoGrid tests failed." -} +#src_test() { +# elog "Testing autodock" +# cd "${S}/autodock/Tests" || die +# cp ../*.dat . || die +# ${EPYTHON} test_autodock4.py || die "AutoDock tests failed." +# einfo "Testing autogrid" +# cd "${S}/autogrid/Tests" || die +# ${EPYTHON} test_autogrid4.py || die "AutoGrid tests failed." +#} src_install() { if use openmp; then @@ -79,7 +97,7 @@ src_install() { insinto /usr/share/${PN} doins -r \ autodock/{AD4_parameters.dat,AD4_PARM99.dat} \ - $(usex examples "autodoc/EXAMPLES" "") + $(usex examples "autodock/EXAMPLES" "") DOCS=( RELEASENOTES @@ -88,15 +106,9 @@ src_install() { autodock/USERGUIDES/AutoDock4.2_UserGuide.pdf ) einstalldocs + readme.gentoo_create_doc } pkg_postinst() { - elog "The AutoDock development team requests all users to fill out the" - elog "registration form at:" - echo - elog "\thttp://autodock.scripps.edu/downloads/autodock-registration" - echo - elog "The number of unique users of AutoDock is used by Prof. Arthur J." - elog "Olson and the Scripps Research Institude to support grant" - elog "applications." + readme.gentoo_print_elog } |