1 files changed, 0 insertions, 74 deletions
diff --git a/sci-biology/last/files/last-299-fix-build-system.patch b/sci-biology/last/files/last-299-fix-build-system.patch
deleted file mode 100644
index 0a89cea60278..000000000000
--- a/sci-biology/last/files/last-299-fix-build-system.patch
+++ /dev/null
@@ -1,74 +0,0 @@
-Make build system respect user flags
-
---- a/makefile
-+++ b/makefile
-@@ -1,6 +1,5 @@
--CXXFLAGS = -O3
- all:
--	@cd src && $(MAKE) CXXFLAGS="$(CXXFLAGS)"
-+	$(MAKE) -C src
- 
- prefix = /usr/local
- exec_prefix = $(prefix)
-@@ -10,15 +9,15 @@
- 	cp src/last?? scripts/*.?? $(bindir)
- 
- clean:
--	@cd src && $(MAKE) clean
-+	$(MAKE) -C src clean
- 
- html:
--	@cd doc && $(MAKE)
-+	$(MAKE) -C doc
- 
- distdir = last-`hg id -n`
- 
- dist: log html
--	@cd src && $(MAKE) version.hh
-+	$(MAKE) -C src version.hh
- 	rsync -rC --exclude 'last??' doc examples makefile s* *.txt $(distdir)
- 	zip -qrm $(distdir) $(distdir)
- 
---- a/src/makefile
-+++ b/src/makefile
-@@ -1,12 +1,9 @@
--CXX = g++
--CC  = gcc
--
--CXXFLAGS = -O3 -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef	\
---Wcast-align -Wno-long-long -ansi -pedantic
-+last_CXXFLAGS = -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef	\
-+-Wcast-align -Wno-long-long -pedantic
- # -Wconversion
- # -fomit-frame-pointer ?
- 
--CFLAGS = -Wall
-+last_CFLAGS = -Wall
- 
- DBSRC = Alphabet.cc MultiSequence.cc CyclicSubsetSeed.cc	\
- SubsetSuffixArray.cc LastdbArguments.cc io.cc fileMap.cc	\
-@@ -49,17 +46,20 @@
- 
- all: lastdb lastal lastex
- 
-+.cpp.o:
-+	$(CXX) $(CPPFLAGS) $(last_CXXFLAGS) $(CXXFLAGS) -c -o $@ $<
-+
- lastdb: $(DBSRC) $(DBINC) makefile
--	$(CXX) $(CPPFLAGS) $(CXXFLAGS) $(LDFLAGS) -o $@ $(DBSRC)
-+	$(CXX) $(CPPFLAGS) $(last_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) -o $@ $(DBSRC)
- 
- lastal: $(ALSRC) $(ALINC) makefile $(OBJ)
--	$(CXX) $(CPPFLAGS) $(CXXFLAGS) $(LDFLAGS) -o $@ $(ALSRC) $(OBJ)
-+	$(CXX) $(CPPFLAGS) $(last_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) -o $@ $(ALSRC) $(OBJ)
- 
- lastex: $(EXSRC) $(EXINC) makefile
--	$(CXX) -Igumbel_params $(CPPFLAGS) $(CXXFLAGS) $(LDFLAGS) -o $@ $(EXSRC)
-+	$(CXX) $(CPPFLAGS) -Igumbel_params $(last_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) -o $@ $(EXSRC)
- 
- $(OBJ): CA_code/*.c CA_code/*.h makefile
--	$(CC) $(CPPFLAGS) $(CFLAGS) -c CA_code/lambda_calculator.c
-+	$(CC) $(CPPFLAGS) $(last_CFLAGS) $(CFLAGS) -c -o $@ CA_code/lambda_calculator.c
- 
- clean:
- 	rm -f lastdb lastal lastex $(OBJ)