gentoo auto-resync : 27:03:2024 - 07:01:35

12 files changed, 117 insertions, 12 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index d726c29fe74e..18647c17563a 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/getdata/Manifest b/sci-libs/getdata/Manifest
index bc01100c1132..ea598b3c58db 100644
--- a/sci-libs/getdata/Manifest
+++ b/sci-libs/getdata/Manifest
@@ -1,5 +1,6 @@
+AUX getdata-0.11.0-bashisms-configure.patch 2392 BLAKE2B 2c282c0b8926bdcdec096018ce633d358009dd5113badf10ea5ebd6387267748639f195d6997787e3b58e10edeb63274c10702bc91dbef9f49295e83e7c1e437 SHA512 6650f18cb685db4b974901f70464212baf619023c0491f0dc1fdf0500652ea9c18c113bcdace448056597e57c48087b362c79e2042610eed6b6677ed41a9fd79
 AUX getdata-0.11.0-fix-gzseek64-not-found.patch 225 BLAKE2B f1e4ddda81fddbb3683303b9c844d1f51f40eb9f0283aa1a8dbf48f0cf438fff99850a11412ba0a1b69a2c929f22371ba8e256e0fe4529718f7863295e39969e SHA512 16f39cebc98933dcb70cfa6ec85369755affa11d02152aeac75f9875b14c1caad7716ef1b872445a7456cc11c1a285a1281f8ee859a6ee807d2e3ab09170312f
 DIST getdata-0.11.0.tar.xz 1060324 BLAKE2B b758447429f95d53d6ce3e32eb5591d0141c218f5b3a3c391fb713722f8dc12fba2add078d75be1b2957b2d27b7d843cb51450fc49394da130548721f5df9384 SHA512 cf301449288c2b0e337a356f03ac8d295a4f5a32eb6c2a29c15c6fcc434a9eea8661a8070defbbf1d751e64e1f616e4353863b13d350fa8df6837631d86bc932
-EBUILD getdata-0.11.0-r1.ebuild 1397 BLAKE2B 60a88c63a11f55e1227e346a78757c38be09d85dc6b6aed3b634f0ab219f7c00ca1a0a2ef75f92087e7448deccf63be71c8932ac49a7e4d6a88d5eb1bccb44eb SHA512 11584b3ca8ad0a40c1ec37fd1ffb2dbefc81c476b72b8225101449408a6ec7ee87d4331d2e7a9617851b9b8a4c560bc4061d2709278489799ed8ec32092bf842
-EBUILD getdata-0.11.0.ebuild 1327 BLAKE2B 87683f25b684c2b216aa3112d132cc35ce481a1559c917aec7068d48fad532700988a0843e3f4aa5a343a8a8363fada7292592bbc5726ac6e7787699e0f8cfe8 SHA512 d73661d7cd57d81b19461afc1cfea69a759fdb56c45826a5553e37bc715432241784c31b1d841cd350f6c374e31d352b209ae16069ea8585af68ffa3f59c6903
-MISC metadata.xml 663 BLAKE2B 2d4a85bb71171eb7147e514e48d580b676785ef0d051f0b6a36c7c046bad44daae51f9b1e8877b7c1e77ebe5b4dd5c0302c1a3282431323d0b70ce8dd70000c1 SHA512 1910dd8dc7b91cb423fd2bff21b9741baddf9e628a588c19d89895285f827118f8640ebedcb7ba599bec956a61eb4a94de3136209016f1c0920da6d5a1c2eed6
+EBUILD getdata-0.11.0-r2.ebuild 1648 BLAKE2B 95433039c314aa2369a3ca5353dd51b531c89d88239782bc0771f3e5b03679c564969f4c45be7fb086e7aa22bff808efbd9e29381efff81be1f3bb6f217b5abb SHA512 aa9f58b1e53eb9d06d5f0859e78b18280c73301a018d875c12cfcadc60a820b974abaa7b1c70f2e3337b4dc9afc9cc9ec2eadb1d007a4ec60b496c687769c8b6
+EBUILD getdata-0.11.0.ebuild 1345 BLAKE2B 334df703447900691e7d667524f3c8cbb0ed24131b6791dae344df537156c55e19efed7c739774a6c6fd3b6ed1ea86553fdae23a16f70585a526d9ef9392bbd9 SHA512 c3f8d6b500a6835820f5ee24196a4ded35f43c5f65c6763bf084105726c5cd7ad240c5d941d5df3d98e4d6276b4c4b9bac9758734205cc9b0a6af5ccd8fc7761
+MISC metadata.xml 723 BLAKE2B c457ab6f5cc9f9c4c4fc0b7cc0b24b398572569aa733303e8473acde4b426145867429fc0c4dfbec15512d498e0d518bd6f3721ddf7a51ce31d090faf5a69ca3 SHA512 e2b1292ea8e15d46154d33ba620c575fc8a6a5a16fb1669992996b737779ce6ac6ae3f09ceafc8c693ea401a39a319992aa7a433e4eeb25e05ce62fd68025922
diff --git a/sci-libs/getdata/files/getdata-0.11.0-bashisms-configure.patch b/sci-libs/getdata/files/getdata-0.11.0-bashisms-configure.patch
new file mode 100644
index 000000000000..df3915f7b849
--- /dev/null
+++ b/sci-libs/getdata/files/getdata-0.11.0-bashisms-configure.patch
@@ -0,0 +1,66 @@
+--- a/configure.ac
++++ b/configure.ac
+@@ -571,7 +571,7 @@ if test "x${use_modules}" != "xno"; then
+   LDFLAGS=$saved_ldflags
+   LIBS=$saved_libs
+ 
+-  if test "x$have_ltdl" == "xno"; then
++  if test "x$have_ltdl" = "xno"; then
+     AC_MSG_ERROR([libltdl is required to build modules.  Please either specify the location of the libltdl library using --with-ltdl=PREFIX or else disable the building of modules by using --disable-modules])
+   fi
+ 
+@@ -601,18 +601,18 @@ AC_SUBST([LIBLTDL])
+ AC_SUBST([LTDLINCL])
+ 
+ dnl check if we found a C++ compiler
+-if test "x$CXX" == "x"; then
++if test "x$CXX" = "x"; then
+   make_cxxbindings=no
+ fi
+ 
+ dnl check if we found a Fortran 77 compiler
+-if test "x$F77" == "x"; then
++if test "x$F77" = "x"; then
+   make_f77bindings=no
+   make_f95bindings=no
+ fi
+ 
+ dnl check if we found a free-form Fortran compiler
+-if test "x$FC" == "x"; then
++if test "x$FC" = "x"; then
+   make_f95bindings=no
+ fi
+ 
+@@ -641,7 +641,7 @@ fi
+ dnl F77 stuff
+ if test "x$make_f77bindings" != "xno"; then
+   AC_F77_WRAPPERS
+-  if test "x$ac_cv_f77_mangling" == "xunknown"; then
++  if test "x$ac_cv_f77_mangling" = "xunknown"; then
+     make_f77bindings=no
+     make_f95bindings=no
+   fi
+@@ -1065,7 +1065,7 @@ else
+   AC_MSG_RESULT([$use_slim])
+   AC_MSG_CHECKING([for zzip support])
+   AC_MSG_RESULT([$use_zzip])
+-  if test "$use_slim$use_zzip" == "yesyes"; then
++  if test "$use_slim$use_zzip" = "yesyes"; then
+     if test $zzslim_override = "yes"; then
+       AC_MSG_CHECKING([for zzslim support])
+       AC_MSG_RESULT([yes (forced)])
+@@ -1200,11 +1200,11 @@ AC_CONFIG_FILES([test/Makefile])
+ AC_CONFIG_FILES([util/Makefile])
+ 
+ dnl Automake conditionals
+-AM_CONDITIONAL(GETDATA_DEBUG, [test "x$enable_debug" == "xyes"])
++AM_CONDITIONAL(GETDATA_DEBUG, [test "x$enable_debug" = "xyes"])
+ AM_CONDITIONAL(HAVE_SED, [ test "x${SED}" != 'x' ])
+ AM_CONDITIONAL(INTEL_F77_COMPILER,
+-               [test "x$gd_cv_f77_compiler_intel" == "xyes"])
+-AM_CONDITIONAL(INTEL_FC_COMPILER, [test "x$gd_cv_fc_compiler_intel" == "xyes"])
++               [test "x$gd_cv_f77_compiler_intel" = "xyes"])
++AM_CONDITIONAL(INTEL_FC_COMPILER, [test "x$gd_cv_fc_compiler_intel" = "xyes"])
+ AM_CONDITIONAL(INCLUDE_LEGACY_API, [test "x$include_legacy_api" != "xno"])
+ AM_CONDITIONAL(MAKE_CXXBINDINGS, [test "x$make_cxxbindings" = "xyes"])
+ AM_CONDITIONAL(MAKE_F77BINDINGS, [test "x$make_f77bindings" != "xno"])
diff --git a/sci-libs/getdata/getdata-0.11.0-r1.ebuild b/sci-libs/getdata/getdata-0.11.0-r2.ebuild
index 698d2697d850..db7e24e11bc4 100644
--- a/sci-libs/getdata/getdata-0.11.0-r1.ebuild
+++ b/sci-libs/getdata/getdata-0.11.0-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -17,6 +17,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="bzip2 cxx debug flac fortran lzma perl static-libs"
 
 DEPEND="
+	dev-libs/libltdl
 	bzip2? ( app-arch/bzip2 )
 	lzma? ( app-arch/xz-utils )
 	perl? ( dev-lang/perl )
@@ -25,6 +26,7 @@ RDEPEND="${DEPEND}"
 
 PATCHES=(
 	"${FILESDIR}"/${PN}-0.11.0-fix-gzseek64-not-found.patch
+	"${FILESDIR}"/${PN}-0.11.0-bashisms-configure.patch
 )
 
 src_prepare() {
@@ -33,6 +35,12 @@ src_prepare() {
 }
 
 src_configure() {
+	# -Werror=lto-type-mismatch
+	#
+	# In theory I could report a bug. In practice the project has ignored all
+	# bug reports since immediately after switching to github.
+	filter-lto
+
 	# GCC 10 workaround
 	# bug #723076
 	append-fflags $(test-flags-FC -fallow-argument-mismatch)
diff --git a/sci-libs/getdata/getdata-0.11.0.ebuild b/sci-libs/getdata/getdata-0.11.0.ebuild
index 4b0f5f033a18..ef397493899d 100644
--- a/sci-libs/getdata/getdata-0.11.0.ebuild
+++ b/sci-libs/getdata/getdata-0.11.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -17,6 +17,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="bzip2 cxx debug flac fortran lzma perl static-libs"
 
 DEPEND="
+	dev-libs/libltdl
 	bzip2? ( app-arch/bzip2 )
 	lzma? ( app-arch/xz-utils )
 	perl? ( dev-lang/perl )
diff --git a/sci-libs/getdata/metadata.xml b/sci-libs/getdata/metadata.xml
index 716f2c3c2ae5..d1f4f454496b 100644
--- a/sci-libs/getdata/metadata.xml
+++ b/sci-libs/getdata/metadata.xml
@@ -12,6 +12,7 @@
   provide a fast, simple format for storing and reading data.
   </longdescription>
   <upstream>
+    <remote-id type="github">ketiltrout/getdata</remote-id>
     <remote-id type="sourceforge">getdata</remote-id>
   </upstream>
 </pkgmetadata>
diff --git a/sci-libs/matio/Manifest b/sci-libs/matio/Manifest
index 612190c785cc..da41ac4b20f6 100644
--- a/sci-libs/matio/Manifest
+++ b/sci-libs/matio/Manifest
@@ -1,3 +1,3 @@
 DIST matio-1.5.23.tar.gz 10115808 BLAKE2B a461cd8a0057db2bf1bc0249f4e9c3a0b901bc19fc274c7b9c38d3376b86d556bcfd997a32d5eb7d03b911f7a265c35ee337d98daccea5549d4e16d16f67932b SHA512 e125278dcb25695affb7c576d0e2a86c0eff4225aa866b81536c9e4d7b2aea2c554f5389e96d534a8b559f5554b6cbecff4b44fe8915173cd64b2da6d1dc2629
-EBUILD matio-1.5.23.ebuild 972 BLAKE2B cd4622138dcb1cf4cf2ba265ace2f837070db99fa8010ad754fd29d73a90de4e6d06b507272cc99a453a64b3b03e624cc00eec846600f211c74a29808938772e SHA512 2fe82d833dd3fb69aa3542e4e7580331ec590915e32aea76f3d9ca0d87346972d8ff0462d884fbd13ce5445b75f459a88f5a18d25e4b02e27df4c2341c3be803
+EBUILD matio-1.5.23.ebuild 1030 BLAKE2B aba976e38e79d09fe72badf35e184b174d47584f72bc6d570d8c000fd65480c0dbaab3c58a37705ecac70165f73f461c4d44e3dca18eeb2cc445ff5e03eaad5a SHA512 908abcd2b5705294351360a7fb6f396888ea8b986be35d2fc4c9acaa326ce89954830153bac6fb1abd192353c5e56cdf8a7e308a4c025478c2f183455bc1c4cd
 MISC metadata.xml 594 BLAKE2B 82344b52844527c9379db5a14b0bc01a370c9674f74ab89938287edadf8cfccac39ee4db3ace84080adf9e15627b41b332f3fc6deda66fca340bd15d07dfdaf5 SHA512 20ac24cfcb94d2d9751e8b224814d91fc66edd2c69f95ae961b99192f4416867d5c342b6da34c8cfdd21a0dff7b26e8e3334d6c4cc9bfab908bee219e41a1174
diff --git a/sci-libs/matio/matio-1.5.23.ebuild b/sci-libs/matio/matio-1.5.23.ebuild
index 07f134ffdfa6..9e66ecdece8b 100644
--- a/sci-libs/matio/matio-1.5.23.ebuild
+++ b/sci-libs/matio/matio-1.5.23.ebuild
@@ -3,6 +3,8 @@
 
 EAPI=8
 
+inherit libtool
+
 DESCRIPTION="Library for reading and writing matlab files"
 HOMEPAGE="https://sourceforge.net/projects/matio/"
 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
@@ -18,6 +20,11 @@ RDEPEND="
 DEPEND="${RDEPEND}"
 BDEPEND="doc? ( virtual/latex-base )"
 
+src_prepare() {
+	default
+	elibtoolize
+}
+
 src_configure() {
 	econf \
 		--disable-static \
diff --git a/sci-libs/netcdf-cxx/Manifest b/sci-libs/netcdf-cxx/Manifest
index d37cb76b4849..f20f4c6d1212 100644
--- a/sci-libs/netcdf-cxx/Manifest
+++ b/sci-libs/netcdf-cxx/Manifest
@@ -2,7 +2,7 @@ AUX netcdf-cxx-4.3.1-slibtool.patch 1500 BLAKE2B 6cd24e0a48c27c4c5a474acb671f98c
 DIST netcdf-cxx-4.2.tar.gz 703482 BLAKE2B a6727b7305204d2b53e6ee951c8165b03cd07f14e5d59a306445481272d0e10eb077e4bc62a2586c57652cb8273b9098ed77836f9023817d8a9e6ef51ac2cfe8 SHA512 347ddbc518ac2186868d69417342e5146e285fc3a88f7c55edc33063f5c9a6647af7e512a03b9b6a8f67a448b85a1edcdde5df707b893f6a1527821cfd78e643
 DIST netcdf-cxx-4.3.1.tar.gz 607679 BLAKE2B 68677ba72e66d351bf6d33a2584a3a1edd9da98b41ed66e3f51f8d3d358bfd84bad3e2e06403edf76d26b2c76807ae40859995d8817725e531a27680d04f2501 SHA512 404711eb80d5e78968c0f6cbdcb08855a2778d7fd94e7ee94bdc9d1cd72848ac3327613c6437a7634349f26bc463b950092a2999abb34ddab0a47ad185547d22
 DIST netcdf-cxx4-4.3.1.tar.gz 598335 BLAKE2B e8272d9bd74cf9b814303a5b208be20228149533a9cc78cc1ef460f2cfb0086c7187afba325ab9a7b3d071e0fb9160d3b057e3bee68b679d9f504ccfecb016d8 SHA512 f5d9d26fb9f57430d0d681a9c7396bb0f03ed6446ac6fed51058dcc43690c02565da3f729f98b268b0bd923ca8b5b3cfa8340aca6a4f18f512c0c320ea20703f
-EBUILD netcdf-cxx-4.2-r301.ebuild 583 BLAKE2B 30732360da6ae15649b283dcc974192fd4e490c878a38378380863f3369f6395b05629eee54292089c3f904f5e2e40afc630752509e9d60000546892a7b309ca SHA512 11dcbbafeaa004707e0034da82b225062d0fb2095c24b5d187ca4338453e45d30cc5c91fb64f6635311dbf75e351ba9af6c7c16b3e4dd2dd14c42ae4bf9c849c
-EBUILD netcdf-cxx-4.3.1-r1.ebuild 707 BLAKE2B 7eb126a243a7e422dfcf898ae8a84cf3bb4564b1e9ac31de04c789def36f51742181cc85f34466ced76ae503852c5d59bec375ee2dd932dc40f09f1a74e35e8a SHA512 ef0384e16a50952cadbfc3ef581399767cd11019fb1950c4cbde4bdbbab3a9d0125a43b27044770de233a171b7ca8627c5aa730f9f448a015bbaf1f31c0fac52
-EBUILD netcdf-cxx-4.3.1.ebuild 754 BLAKE2B 40d41f6d8d7ec3f89dfbfd619d524a1d7b389ffe6efa15d27fb3c7ea7439da05d495a3fb54170c27d09c08863378c721bc24ae51fe75c2e055dc950e4ecbd970 SHA512 4b1b0037d03ac71a4033e8e6a724bb3c1ae196f0f6247cedbc4371c59dce7df72f1a3297376f0997600cb17fde70655bcd39378b6a60d06cb1b0f386d1274921
+EBUILD netcdf-cxx-4.2-r301.ebuild 643 BLAKE2B 6404325bb919f1543755e8fdf53ef6a448a8af1e2b0c704756e6927d7ef16ef7d7fc2f697975f859f5d21fb449f54389dd75a3bd18ecd58670e9bf82849d3b6b SHA512 a1bee6457c58f7711149fa1a7be41490dd0dea2ca113b453f1618324702bd5bda9d87590e33ccf062022065acb45952d806ec6f1425d0d777d749c17165422fa
+EBUILD netcdf-cxx-4.3.1-r1.ebuild 765 BLAKE2B 04735c8b41427eca274b632fa6e7901fd01e3b3729e389a9eb26aefbda51167b9ba4b8df529d2ddbc7448b78abd8c311c03641b0edbc8b23bab3ab5cbfdcaac1 SHA512 d9086eb4e32421a093c8e04535f97e79441555ad83c85850fcb932fbaeecf3fc56f9b828bda3b81f11682989714dfbe33a5c83b0041558d40f1b267d76052256
+EBUILD netcdf-cxx-4.3.1.ebuild 812 BLAKE2B c5219c46f45b12533ceff2fcda6bf1cec66638f776a088dd2b2bf1e66d7c930b91d5c0654ace11736aad50a6376ca7d0c1b9a59b55fdbb0d3719a0065c9a1270 SHA512 8b9064c4ce16ef2f75e9a5c26d1dfb4e5376f3a9de6c4de01644a723e10b142cbfbcc54e3533cc9ba60b8fb4c99af5f3bbd07dd257dafdf251af4106b3d39614
 MISC metadata.xml 839 BLAKE2B 2cda1c652d7d7e83ebb67f70db48dc7b9a11908813739a646cb5798dd232f8eff5754c10adb0fbd206be6280fd599aacd6f63181b658623d55e17d6e73b0f4f0 SHA512 7e8f0b88ef5ad2cba94369ad26f2b27a648831b6433e05d127e4bc72ccfe6afc5eba7695f5c3cabc426a9913e599ce9b0455a087f9d606471cd351c8be5190d6
diff --git a/sci-libs/netcdf-cxx/netcdf-cxx-4.2-r301.ebuild b/sci-libs/netcdf-cxx/netcdf-cxx-4.2-r301.ebuild
index 897094334974..04c76791f47d 100644
--- a/sci-libs/netcdf-cxx/netcdf-cxx-4.2-r301.ebuild
+++ b/sci-libs/netcdf-cxx/netcdf-cxx-4.2-r301.ebuild
@@ -1,8 +1,10 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
+inherit autotools
+
 DESCRIPTION="C++ library for netCDF"
 HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/"
 SRC_URI="https://www.unidata.ucar.edu/downloads/netcdf/ftp/${P}.tar.gz"
@@ -15,6 +17,11 @@ IUSE="examples"
 RDEPEND=">=sci-libs/netcdf-4.2:0="
 DEPEND="${RDEPEND}"
 
+src_prepare() {
+	default
+	eautoreconf
+}
+
 src_configure() {
 	econf --disable-static
 }
diff --git a/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1-r1.ebuild b/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1-r1.ebuild
index a628593681d9..1a1079b72566 100644
--- a/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1-r1.ebuild
+++ b/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1-r1.ebuild
@@ -1,8 +1,10 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
+inherit libtool
+
 MYP=${PN}4-${PV}
 DESCRIPTION="C++ library for netCDF"
 HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/"
@@ -24,6 +26,11 @@ PATCHES=(
 	"${FILESDIR}"/${P}-slibtool.patch
 )
 
+src_prepare() {
+	default
+	elibtoolize
+}
+
 src_install() {
 	default
 	use examples && dodoc -r examples
diff --git a/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1.ebuild b/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1.ebuild
index 243ba75a2e3a..559d4d5483dc 100644
--- a/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1.ebuild
+++ b/sci-libs/netcdf-cxx/netcdf-cxx-4.3.1.ebuild
@@ -1,8 +1,10 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
+inherit libtool
+
 MYP=${PN}4-${PV}
 DESCRIPTION="C++ library for netCDF"
 HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/"
@@ -24,6 +26,11 @@ PATCHES=(
 	"${FILESDIR}"/${P}-slibtool.patch
 )
 
+src_prepare() {
+	default
+	elibtoolize
+}
+
 src_configure() {
 	econf --disable-static
 }