summaryrefslogtreecommitdiff
path: root/sci-chemistry
diff options
context:
space:
mode:
authorV3n3RiX <venerix@koprulu.sector>2023-11-01 09:48:44 +0000
committerV3n3RiX <venerix@koprulu.sector>2023-11-01 09:48:44 +0000
commit89e7211956082c276a5a7bd56153c337600969e1 (patch)
treef4b5b3fd4ad8e247e22943db6619c152aa5eb3f5 /sci-chemistry
parentd4ad8633bc8c3408481e882d717fce4985457d81 (diff)
gentoo auto-resync : 01:11:2023 - 09:48:44
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/Manifest.gzbin9527 -> 9524 bytes
-rw-r--r--sci-chemistry/gromacs/Manifest24
-rw-r--r--sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2021.6.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2022.6.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2022.9999.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2023.2.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-2023.9999.ebuild12
-rw-r--r--sci-chemistry/gromacs/gromacs-9999.ebuild12
14 files changed, 74 insertions, 74 deletions
diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index d2b56c7f816c..01e6a0558e0a 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index d4c862325462..a08759b8dbc0 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -30,16 +30,16 @@ DIST regressiontests-2022.5.tar.gz 48615858 BLAKE2B 6655946155291eb24f76832c76e2
DIST regressiontests-2022.6.tar.gz 48615697 BLAKE2B 566adafbc36d3c1faae322fca9cf451f57245c4ceed63f90f26208025937dae0c1bbb8c372bce618f63305d0368113fecd96c7275a75d8b9c19c22a6e5aa9b96 SHA512 68aa9bedffbea37fb7703c18c3f66f607a91f16ece4bec58ced6e42a481156b2fe83760d0e40cecbdcaf87b168441b8ebde27cec30d98c89f516360ea45ddd43
DIST regressiontests-2023.1.tar.gz 48613205 BLAKE2B b64716e08e5597676794209a0a951d2a5a46aab2b05bc1615d6f4ba666d5c81a7fe9247fc90ce8d9a5da1a9d52eea73d3d3cd4a4072a8bad66b8de0e06dfa599 SHA512 c6924ec75e456950cef0809ea9718be1bf9d85fe6e9ba5553b2df86ef604b0c7f54d41476f45cbc0ccf801ee0290a829bf4f9eb8d0773586bb8385efc5242d4d
DIST regressiontests-2023.2.tar.gz 48621115 BLAKE2B bc19380e7adaef5246d5620b611546fcd31e1b92129b78c6a8b9acf58bcebab8427aca1b71434b9d6f44535aeb7c2053ada941a8851435f3949aab43316ec136 SHA512 ecb275b93b72bc862c1c9f87c7c1b3abbe535c770e86c020f0f5684a60c6edeb19a193719f338d42576b9c40ec213b915f4c2b3c206dca574eccb8f9ade2c261
-EBUILD gromacs-2018.8-r2.ebuild 6678 BLAKE2B 02eaf7b1141c3942990493ea43d1e07700b64f5c3cb17d79d5fe2e368e9ebdc532b611c5fc4c83b6d232f6597454db7f5f4996141c90a9a53808d0d235db2b05 SHA512 34a91d37b6a5cb888d9d495e415a74edf600cc1cb024021ac026e87ffbdf681b5b3e5c29c966b93af6070f0fe81722cae38c49d749bdd5d9305bb8749273612b
-EBUILD gromacs-2019.6-r3.ebuild 7056 BLAKE2B 3a2b43e4a0152c5f081d5cb675971c5bb86d59c8ec0432bcfb9143fcdb35ef807553c6aa60c376307aa2a285379da8a7ac6378e47f8682d08252680ffee68164 SHA512 2521b048d84392b972a0247fa586256da1b827838cd954ee2672d8da55c0dc0b57cedb9bac7704ae0594e304433b5a0c2568b49a0fe272d23ff1c03aee16b3e0
-EBUILD gromacs-2020.7-r1.ebuild 9850 BLAKE2B 1bdc5d13bcfa5624e4069469a9f8e4d02652b4d64f54215d70e62651aafc06e0a3edfb73b3ed6568025e23670411e81b46c0ee773b641f9e0e82031ac41f14d4 SHA512 f88deaf0117b3de34a00935df82caa6996b8be4af995dd4747a4eb363ea806aedd59187888480c71a01a178e8b6d83228a86db828116e3ab2435af0d2ae4942c
-EBUILD gromacs-2021.6.ebuild 10055 BLAKE2B 30bf21addedf543188153211a8b89204bd86b18d7a3fda1d30bba80db5049e45d1113110eafd0ed5ee899481385d890b69dbe8c0b3ce3f7f75a1740b334c6960 SHA512 b171081fabae29c44e7827c36dcda8a4b787dd6a335c3ee31ad6c2a811fac05331381213b3a978daf28d62dd96bb930c5d1bb05182b2b537ad8bd56c2acc4d35
-EBUILD gromacs-2021.7-r1.ebuild 10154 BLAKE2B 254bc7d02cd28b695b74423cb5c97affa0b235121c31df79e943f027d4812e4f6a355e4f672cf78d97224fdfd04db5819fda1159c2eaf5ffb40163a637d054bc SHA512 9487cc4a9a79080deadcdeb0e3383b33177e979f49db407ee68e6c20d1d078aa03d28d463bf4e361f02b51c3718a43c81c20fe08741c9dc7ab2fcc3ded2c37d0
-EBUILD gromacs-2022.5-r1.ebuild 9598 BLAKE2B 934002e01c79ff4e9bf06ce3ceb397fbc5fbca2803d8a1efc4896678d631294a34cb0dd4d468b316c1d293084c052240aaa5569e4eaaab497eec3b8e70e70569 SHA512 001c68fd73dee20a2813252ba8ef397da2fa1f6b7a4c4983d8317496641a91e06a2bea065c74067bda7a57ed40a984671373c2a608369bd86aac28cfc0b3fddb
-EBUILD gromacs-2022.6.ebuild 9598 BLAKE2B 934002e01c79ff4e9bf06ce3ceb397fbc5fbca2803d8a1efc4896678d631294a34cb0dd4d468b316c1d293084c052240aaa5569e4eaaab497eec3b8e70e70569 SHA512 001c68fd73dee20a2813252ba8ef397da2fa1f6b7a4c4983d8317496641a91e06a2bea065c74067bda7a57ed40a984671373c2a608369bd86aac28cfc0b3fddb
-EBUILD gromacs-2022.9999.ebuild 9598 BLAKE2B 934002e01c79ff4e9bf06ce3ceb397fbc5fbca2803d8a1efc4896678d631294a34cb0dd4d468b316c1d293084c052240aaa5569e4eaaab497eec3b8e70e70569 SHA512 001c68fd73dee20a2813252ba8ef397da2fa1f6b7a4c4983d8317496641a91e06a2bea065c74067bda7a57ed40a984671373c2a608369bd86aac28cfc0b3fddb
-EBUILD gromacs-2023.1-r1.ebuild 9753 BLAKE2B d806432a95974f89b8596dbb86e5f2adffb4240d3f1182b54353a1abf0ea280593f7d4fa04791ecb2603108c56752c9d50e35a37bbf6c676f53370ae1fe3d2f5 SHA512 04c1e2ea6b0850696dd3e846e115a73978b25d28ebc486e2e11fb04d49e8935e6b39513a4d9463985d872e557e43294433e74a4a01165f6f1e80b7fe5ee6e3f9
-EBUILD gromacs-2023.2.ebuild 9753 BLAKE2B d806432a95974f89b8596dbb86e5f2adffb4240d3f1182b54353a1abf0ea280593f7d4fa04791ecb2603108c56752c9d50e35a37bbf6c676f53370ae1fe3d2f5 SHA512 04c1e2ea6b0850696dd3e846e115a73978b25d28ebc486e2e11fb04d49e8935e6b39513a4d9463985d872e557e43294433e74a4a01165f6f1e80b7fe5ee6e3f9
-EBUILD gromacs-2023.9999.ebuild 9753 BLAKE2B d806432a95974f89b8596dbb86e5f2adffb4240d3f1182b54353a1abf0ea280593f7d4fa04791ecb2603108c56752c9d50e35a37bbf6c676f53370ae1fe3d2f5 SHA512 04c1e2ea6b0850696dd3e846e115a73978b25d28ebc486e2e11fb04d49e8935e6b39513a4d9463985d872e557e43294433e74a4a01165f6f1e80b7fe5ee6e3f9
-EBUILD gromacs-9999.ebuild 9753 BLAKE2B d806432a95974f89b8596dbb86e5f2adffb4240d3f1182b54353a1abf0ea280593f7d4fa04791ecb2603108c56752c9d50e35a37bbf6c676f53370ae1fe3d2f5 SHA512 04c1e2ea6b0850696dd3e846e115a73978b25d28ebc486e2e11fb04d49e8935e6b39513a4d9463985d872e557e43294433e74a4a01165f6f1e80b7fe5ee6e3f9
+EBUILD gromacs-2018.8-r2.ebuild 6677 BLAKE2B 78c1e0f00b59bef4f5fd9961edc247eedff72592039ef394d844eb0a4a54d22dc9994f18348d8fe27c6003451cbb822a764eb7f57c7c71472074e6399c74595f SHA512 a68aa80dd9791a3b6169ca82fd1cb77ca0da6c4032020bf8633da3780b3b832a4dcb784ace742297598305512861d41e7d0a16efdb059f5d0de917ef88e6e90b
+EBUILD gromacs-2019.6-r3.ebuild 7055 BLAKE2B b76f489c55fbc06aa37bfe487b542e79eb3dda24f83b858aeeed48f1e805c909db84ee3100ece4480dc5dacd5f703b72963716f20c38befae0664ee0e2f47f7d SHA512 83a1ce33a40fa659a38d48888d69c4b486f36016d980b959e2972c84e3461a595269d9d35f608955a7e38b7638463fc5128abe572b86ca397e6f286734b977e6
+EBUILD gromacs-2020.7-r1.ebuild 9834 BLAKE2B 10a0fc518d1e255540a6083903a79afd4faac6ce1e8ebbf8f80f82a34cdd6f24442fb1aa75fd98a001053da3d748f36ce70cc8da5bfe5a9fbcb4013fe81d1e82 SHA512 d56bb5267689f43ba04056038708c13ab2540391eb7d3cff6aaf4e9e096335ede327fc6a6152fe02b9432041c9609cda9d0ff61ee5f369712c38bae3e7c680e6
+EBUILD gromacs-2021.6.ebuild 10039 BLAKE2B 5e6c9cc09f6a3fc21eb407028de6f54de1a484a582c8780f7fc696f969e4c31c58763564bfbfbcfa9e517c9f43884a5d664cc2b4bc635d8491675217c21e9ef4 SHA512 ffc7476bb2254e8e55c4f65de54498f54a4ee17109e4a5904c0044f85f8bace8a9aae44e083861237feb878b59bda4c1325cd1a5e455b01d79558d2409ce304b
+EBUILD gromacs-2021.7-r1.ebuild 10138 BLAKE2B 34bb731d76864d36e1bd5793f8386071cdbbb1f38178f0f6eabec1dd48daa282f2928860c36bade580286455e93c26b07c6c53a5734d19b19f648b7ff2cd4aa6 SHA512 8034e16d5859ce358db671bda7d71b4aad5d6eecfecc90738d8e7edf4e6ac55dc845c0cf64e2e1ddde1197e83775e64c034725f9a537bec44a1cfceb1459b229
+EBUILD gromacs-2022.5-r1.ebuild 9582 BLAKE2B b48b4ea4d5f805bd54e6b971bd6466751119913ba1635f8c65c771bae4f70ae0e2fcb76af056555a28c2153043554b091dc3befa5569e93da7746ada13311647 SHA512 b3fcff74c03f0c13438f64220898468eb71aac95209661ab8daab20a36eba59e889501e61dd12fced1d57469a08a61c9b006d8ea1258c864373a32f9619c86ed
+EBUILD gromacs-2022.6.ebuild 9582 BLAKE2B b48b4ea4d5f805bd54e6b971bd6466751119913ba1635f8c65c771bae4f70ae0e2fcb76af056555a28c2153043554b091dc3befa5569e93da7746ada13311647 SHA512 b3fcff74c03f0c13438f64220898468eb71aac95209661ab8daab20a36eba59e889501e61dd12fced1d57469a08a61c9b006d8ea1258c864373a32f9619c86ed
+EBUILD gromacs-2022.9999.ebuild 9582 BLAKE2B b48b4ea4d5f805bd54e6b971bd6466751119913ba1635f8c65c771bae4f70ae0e2fcb76af056555a28c2153043554b091dc3befa5569e93da7746ada13311647 SHA512 b3fcff74c03f0c13438f64220898468eb71aac95209661ab8daab20a36eba59e889501e61dd12fced1d57469a08a61c9b006d8ea1258c864373a32f9619c86ed
+EBUILD gromacs-2023.1-r1.ebuild 9737 BLAKE2B 26fa88582554eb958487eb28707207d1b9e808dc8d6cb0a4f5dc01dd9247496c2ba99a8fe6d56fdf71a648e5689f169a3d31f7120e3803fa1ad7ebe2368d74d4 SHA512 7e0614724b1ce808360147380e3234cf74bbf4950cee102405967519969f634179f2cc4a3fea02be758165665d34eb53c3177c46d21ed305ae03f26d4295197a
+EBUILD gromacs-2023.2.ebuild 9737 BLAKE2B 26fa88582554eb958487eb28707207d1b9e808dc8d6cb0a4f5dc01dd9247496c2ba99a8fe6d56fdf71a648e5689f169a3d31f7120e3803fa1ad7ebe2368d74d4 SHA512 7e0614724b1ce808360147380e3234cf74bbf4950cee102405967519969f634179f2cc4a3fea02be758165665d34eb53c3177c46d21ed305ae03f26d4295197a
+EBUILD gromacs-2023.9999.ebuild 9737 BLAKE2B 26fa88582554eb958487eb28707207d1b9e808dc8d6cb0a4f5dc01dd9247496c2ba99a8fe6d56fdf71a648e5689f169a3d31f7120e3803fa1ad7ebe2368d74d4 SHA512 7e0614724b1ce808360147380e3234cf74bbf4950cee102405967519969f634179f2cc4a3fea02be758165665d34eb53c3177c46d21ed305ae03f26d4295197a
+EBUILD gromacs-9999.ebuild 9737 BLAKE2B 26fa88582554eb958487eb28707207d1b9e808dc8d6cb0a4f5dc01dd9247496c2ba99a8fe6d56fdf71a648e5689f169a3d31f7120e3803fa1ad7ebe2368d74d4 SHA512 7e0614724b1ce808360147380e3234cf74bbf4950cee102405967519969f634179f2cc4a3fea02be758165665d34eb53c3177c46d21ed305ae03f26d4295197a
MISC metadata.xml 1375 BLAKE2B 321b7db8536061655a6efaa40110f4858633921292eba465b85fe0cb50280842e511f2f11385fe5d62bbdfb40e9c0c76e8e986a1efce8eac25d52c438d7ed5f4 SHA512 cc61e0b477f6576079a0f7910475b9091c1c521fbb48efab365d355e3c0a80cd19e1ea9028cb269d37c2572546b1be66a210512e40ff0f2d6314d1b0138cdba6
diff --git a/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild b/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild
index 47be575cee41..47501a7b9111 100644
--- a/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild
@@ -231,7 +231,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild b/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild
index d984f873f939..23b83523b057 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild
@@ -246,7 +246,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
index 21bdf25bd343..c82b858efd34 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -106,7 +106,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -138,8 +138,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -341,7 +341,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2021.6.ebuild b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
index b385c1a52f04..ea9a704a03f6 100644
--- a/sci-chemistry/gromacs/gromacs-2021.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -106,7 +106,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -138,8 +138,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -346,7 +346,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
index ba32eebe7d85..8cdb0ae9c78e 100644
--- a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -110,7 +110,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -142,8 +142,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -350,7 +350,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
index 33f192f4a04f..9a91a5cbac88 100644
--- a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -104,7 +104,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -149,8 +149,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -327,7 +327,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2022.6.ebuild b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
index 33f192f4a04f..9a91a5cbac88 100644
--- a/sci-chemistry/gromacs/gromacs-2022.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -104,7 +104,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -149,8 +149,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -327,7 +327,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2022.9999.ebuild b/sci-chemistry/gromacs/gromacs-2022.9999.ebuild
index 33f192f4a04f..9a91a5cbac88 100644
--- a/sci-chemistry/gromacs/gromacs-2022.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.9999.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -104,7 +104,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -149,8 +149,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -327,7 +327,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild b/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
index 7d65ee4958c2..92e8d1b21ec5 100644
--- a/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -107,7 +107,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -152,8 +152,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -329,7 +329,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2023.2.ebuild b/sci-chemistry/gromacs/gromacs-2023.2.ebuild
index 7d65ee4958c2..92e8d1b21ec5 100644
--- a/sci-chemistry/gromacs/gromacs-2023.2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.2.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -107,7 +107,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -152,8 +152,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -329,7 +329,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-2023.9999.ebuild b/sci-chemistry/gromacs/gromacs-2023.9999.ebuild
index 7d65ee4958c2..92e8d1b21ec5 100644
--- a/sci-chemistry/gromacs/gromacs-2023.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.9999.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -107,7 +107,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -152,8 +152,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -329,7 +329,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
diff --git a/sci-chemistry/gromacs/gromacs-9999.ebuild b/sci-chemistry/gromacs/gromacs-9999.ebuild
index 7d65ee4958c2..92e8d1b21ec5 100644
--- a/sci-chemistry/gromacs/gromacs-9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-9999.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
@@ -17,7 +17,7 @@ if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
- git://git.gromacs.org/gromacs.git"
+ "
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
else
@@ -107,7 +107,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
- EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+ EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git" \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -152,8 +152,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
if use build-manual; then
# try to create policy for imagemagik
- mkdir -p ${HOME}/.config/ImageMagick
- cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+ mkdir -p "${HOME}"/.config/ImageMagick
+ cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE policymap [
<!ELEMENT policymap (policy)+>
@@ -329,7 +329,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite gromacs related papers from list:"
- einfo "https://www.gromacs.org/Gromacs_papers"
+ einfo "https://www.gromacs.org/articles.html"
einfo
readme.gentoo_print_elog
}
generated by cgit v1.2.3 (git 2.25.1) at 2024-05-17 12:06:59 +0000