diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2021-10-08 23:06:07 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2021-10-08 23:06:07 +0100 |
| commit | e23a08d0c97a0cc415aaa165da840b056f93c997 (patch) | |
| tree | 4c5f7db60483518201fef36f8cc0712789a08db2 /sci-biology/bcftools | |
| parent | 391b5b359a346aff490103da7dddc85047f83830 (diff) | |
gentoo resync : 08.10.2021
Diffstat (limited to 'sci-biology/bcftools')
| -rw-r--r-- | sci-biology/bcftools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.13.ebuild | 44 |
2 files changed, 46 insertions, 0 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 4b55d93fe29d..359793c2e6bc 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,3 +1,5 @@ DIST bcftools-1.10.2.tar.bz2 3702679 BLAKE2B 51acce94d463868562199206504dc8afb50c671c11139c5a96f52cedf135bb7a46115c69411b9943b970a2395e3c866275c85e345a4a40a90194d1094698314e SHA512 f07e405efa16b9b1b18521342df3eaf840ed1b3028b736a6b4d139012ea85769ddfb3cd3a2c94958415d984d07805dfcd3d4bbec0db401b3f071b861a56d1300 +DIST bcftools-1.13.tar.bz2 6906796 BLAKE2B 4c02d65733d28684f9a976e082913d79dbac4463c9471fc26d8ee0cbe7ad25af429cf7d01b9771bc34309386ccd2d77ebd54fbf64ed4183d1c2ebfbc0e727afb SHA512 aa533233dd2fec2279859204be39430c4fc630137a91d57fe917fd7a220044d5202ddc3d44bcffc3bd5bd5bb64f6ea4c8ec3c31e5e1ec72399998f1e6f23a55a EBUILD bcftools-1.10.2.ebuild 864 BLAKE2B b98c493d6e50d982917ecbf32c424a45231c3f512a49a0c9cd675cbb3d5f21a57d62cc53a20556663b6fd1d58a68df01a9ed56185dd5f400b8ee5b5c7b5497fd SHA512 c8c3173376a35824ce10413e7cba172d6a90dae91352a292df5603f1a7e17cd5987fc91b463b030221b577bce5424ae7a219625cb684cb3fa2f6777581bb19bb +EBUILD bcftools-1.13.ebuild 896 BLAKE2B 74b1387b81ec75926bd76d62033d7cf0708ac3b9a0b0b0573fec1c70efb47b84bd3fa626f3ff3144e380f07822bd3d9e56f4ddb1e09a4a09082cb1d6d3229b39 SHA512 bb0f18c2102fbfa8d5ee636c81308ea8a0ef6de80943423377846ebd2180881ca745e7eddd94be7ad7b34a2313acc43553d8a31ee474542de5d29d4874e935e4 MISC metadata.xml 344 BLAKE2B 37f8e82e8a5a9ad572580a7e5ae6daa6911d672f17b8526f81b236cbc2e50a32c4cd2566aaed9f5feee016d7e2de7db2a40b60616e86c3e8cae307d60cebc70e SHA512 0160c9606089d610613d71dc0aa9c9c5e5266483fdc9c407b6e0ed911eac8f8b32ffaf5a49bbb427393c8240e9868df51f0fc68b2f45467f65d9b3d54b0ddde1 diff --git a/sci-biology/bcftools/bcftools-1.13.ebuild b/sci-biology/bcftools/bcftools-1.13.ebuild new file mode 100644 index 000000000000..b0ddd23857c2 --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.13.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{8..10} ) + +inherit python-single-r1 + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-lang/perl + $(python_gen_cond_dep ' + dev-python/matplotlib[${PYTHON_USEDEP}] + ') + =sci-libs/htslib-${PV}*:= + sys-libs/zlib + ${PYTHON_DEPS}" +DEPEND="${RDEPEND}" +BDEPEND="${PYTHON_DEPS}" + +src_prepare() { + default + + python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --disable-bcftools-plugins \ + --disable-libgsl \ + --with-htslib=system +} |