diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2019-12-15 18:09:03 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2019-12-15 18:09:03 +0000 |
| commit | 7bc9c63c9da678a7e6fceb095d56c634afd22c56 (patch) | |
| tree | 4a67d50a439e9af63947e5f8b6ba3719af98b6c9 /sci-biology/augustus | |
| parent | b284a3168fa91a038925d2ecf5e4791011ea5e7d (diff) | |
gentoo resync : 15.12.2019
Diffstat (limited to 'sci-biology/augustus')
| -rw-r--r-- | sci-biology/augustus/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/augustus/augustus-2.5.5.ebuild | 19 |
2 files changed, 11 insertions, 10 deletions
diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest index 8090dd7eaab3..f34306941b84 100644 --- a/sci-biology/augustus/Manifest +++ b/sci-biology/augustus/Manifest @@ -1,4 +1,4 @@ AUX augustus-2.5.5-sane-build.patch 5271 BLAKE2B 1ba799aa4d9611087f1455f334dc35616979267bb546aa2ab16f6c8d3d528af84373da482840b455d4d0f0374af24cc3010f6925d4a93c0eb7abe524544fd408 SHA512 5afe12b51b8ce27ef32e8e66dd72be451022757228b4c86dec938b26870885bee06712438a22801a42944d2def8ae8bf4a2d7fdb82e12455c145abcd6f0c4aa1 DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f -EBUILD augustus-2.5.5.ebuild 1010 BLAKE2B 4c1e6fd9b147423f33a430395d98b228504eb8a1836f7da5e9e88348e94c356cf52a228ff43978e858a82f48e5d75cbc1d58f18ba20f7459920259191da12a2f SHA512 6cf6076dd9c1c957302f5ec65867b9055a29e4a893f925bc18cb96cc7c57509e65497013e574a33dbe718f0aeb4a25422078874cf0b85603b30ca40abe81527f +EBUILD augustus-2.5.5.ebuild 910 BLAKE2B 5cde42582b4873dbaabe4457a4b7b4f5305b928cbfd7afc3c067cbeb3ea042e82faa56810b4f72078d57f7b0ecd4c96eaa30cfde5ef73d67c26fd05d0035d84e SHA512 03103b4d5cec5dfd46971f1a089d0c02d3cc5ecf7647ee5589e8e297b3f60689c2c763b8c8f2137becfa0e11c0e3c7977186c466085c3065f88eaf5a469bcb9c MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/augustus/augustus-2.5.5.ebuild b/sci-biology/augustus/augustus-2.5.5.ebuild index ff4dfd6cc7e0..5bf36e85cb9b 100644 --- a/sci-biology/augustus/augustus-2.5.5.ebuild +++ b/sci-biology/augustus/augustus-2.5.5.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=4 +EAPI=7 -inherit eutils toolchain-funcs +inherit toolchain-funcs DESCRIPTION="Eukaryotic gene predictor" HOMEPAGE="http://augustus.gobics.de/" @@ -15,30 +15,31 @@ KEYWORDS="amd64 x86" IUSE="examples" S="${WORKDIR}/${PN}.${PV}" +PATCHES=( "${FILESDIR}"/${P}-sane-build.patch ) -src_prepare() { - epatch "${FILESDIR}"/${P}-sane-build.patch +src_configure() { tc-export CC CXX } src_compile() { - emake clean && emake + emake clean + default } src_install() { dobin bin/* -# dobin src/{augustus,etraining,consensusFinder,curve2hints,fastBlockSearch,prepareAlign} exeinto /usr/libexec/${PN} doexe scripts/*.p* + insinto /usr/libexec/${PN} doins scripts/*.conf insinto /usr/share/${PN} doins -r config - echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > "${S}/99${PN}" - doenvd "${S}/99${PN}" + echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > 99${PN} || die + doenvd 99${PN} dodoc -r README.TXT HISTORY.TXT docs/*.{pdf,txt} |