From 7bc9c63c9da678a7e6fceb095d56c634afd22c56 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Sun, 15 Dec 2019 18:09:03 +0000
Subject: gentoo resync : 15.12.2019

---
 sci-biology/augustus/Manifest              |  2 +-
 sci-biology/augustus/augustus-2.5.5.ebuild | 19 ++++++++++---------
 2 files changed, 11 insertions(+), 10 deletions(-)

(limited to 'sci-biology/augustus')

diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest
index 8090dd7eaab3..f34306941b84 100644
--- a/sci-biology/augustus/Manifest
+++ b/sci-biology/augustus/Manifest
@@ -1,4 +1,4 @@
 AUX augustus-2.5.5-sane-build.patch 5271 BLAKE2B 1ba799aa4d9611087f1455f334dc35616979267bb546aa2ab16f6c8d3d528af84373da482840b455d4d0f0374af24cc3010f6925d4a93c0eb7abe524544fd408 SHA512 5afe12b51b8ce27ef32e8e66dd72be451022757228b4c86dec938b26870885bee06712438a22801a42944d2def8ae8bf4a2d7fdb82e12455c145abcd6f0c4aa1
 DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f
-EBUILD augustus-2.5.5.ebuild 1010 BLAKE2B 4c1e6fd9b147423f33a430395d98b228504eb8a1836f7da5e9e88348e94c356cf52a228ff43978e858a82f48e5d75cbc1d58f18ba20f7459920259191da12a2f SHA512 6cf6076dd9c1c957302f5ec65867b9055a29e4a893f925bc18cb96cc7c57509e65497013e574a33dbe718f0aeb4a25422078874cf0b85603b30ca40abe81527f
+EBUILD augustus-2.5.5.ebuild 910 BLAKE2B 5cde42582b4873dbaabe4457a4b7b4f5305b928cbfd7afc3c067cbeb3ea042e82faa56810b4f72078d57f7b0ecd4c96eaa30cfde5ef73d67c26fd05d0035d84e SHA512 03103b4d5cec5dfd46971f1a089d0c02d3cc5ecf7647ee5589e8e297b3f60689c2c763b8c8f2137becfa0e11c0e3c7977186c466085c3065f88eaf5a469bcb9c
 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/augustus/augustus-2.5.5.ebuild b/sci-biology/augustus/augustus-2.5.5.ebuild
index ff4dfd6cc7e0..5bf36e85cb9b 100644
--- a/sci-biology/augustus/augustus-2.5.5.ebuild
+++ b/sci-biology/augustus/augustus-2.5.5.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=4
+EAPI=7
 
-inherit eutils toolchain-funcs
+inherit toolchain-funcs
 
 DESCRIPTION="Eukaryotic gene predictor"
 HOMEPAGE="http://augustus.gobics.de/"
@@ -15,30 +15,31 @@ KEYWORDS="amd64 x86"
 IUSE="examples"
 
 S="${WORKDIR}/${PN}.${PV}"
+PATCHES=( "${FILESDIR}"/${P}-sane-build.patch )
 
-src_prepare() {
-	epatch "${FILESDIR}"/${P}-sane-build.patch
+src_configure() {
 	tc-export CC CXX
 }
 
 src_compile() {
-	emake clean && emake
+	emake clean
+	default
 }
 
 src_install() {
 	dobin bin/*
-#	dobin src/{augustus,etraining,consensusFinder,curve2hints,fastBlockSearch,prepareAlign}
 
 	exeinto /usr/libexec/${PN}
 	doexe scripts/*.p*
+
 	insinto /usr/libexec/${PN}
 	doins scripts/*.conf
 
 	insinto /usr/share/${PN}
 	doins -r config
 
-	echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > "${S}/99${PN}"
-	doenvd "${S}/99${PN}"
+	echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > 99${PN} || die
+	doenvd 99${PN}
 
 	dodoc -r README.TXT HISTORY.TXT docs/*.{pdf,txt}
 
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