diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
| commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
| tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-astronomy | |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-astronomy')
210 files changed, 9151 insertions, 0 deletions
diff --git a/sci-astronomy/aatm/Manifest b/sci-astronomy/aatm/Manifest new file mode 100644 index 000000000000..903f34eafc05 --- /dev/null +++ b/sci-astronomy/aatm/Manifest @@ -0,0 +1,5 @@ +DIST aatm-0.6.tar.gz 613800 SHA256 9fdfb7d0bba71ad32c091baf6242a5bd17041277016473959c5e90d6dcac1b68 SHA512 aef2d0fccc83a8a5817bd414b60c5167f7e378b434f9a3e9ce2bc2eeceec1cc1fb1b141cec07d78cb325dbfceac2804c07866291b2863f6839dfb6143ed9188a WHIRLPOOL 1d8fff78f72810b53f86452a930701d7910314dbd06d0060a7e677260bd29526de44e2b8658c584fd9692727af02a5ee918b319e8932be1cfe428fc579e520d0 +EBUILD aatm-0.6.ebuild 846 SHA256 70966a8917caf62c4063a3ff49ecbbafec80cafe53a5e5df8969ac5b0faddc32 SHA512 4e0440eccdbb80de3304b068f49156fad12b5b1445af4ceb39cde6b37572442475ac5e0ac591da826279308c361c9aa3e5b126c1afd0e4d82d5ec2418ef899c1 WHIRLPOOL 325fc9ab568bc85a98667aea5dd8f077b1806ecaaae1abb4eef43914666eb5b2bed242c1c15f277d77d18cee26e38dc84fd9b22848fb3f256624c57a1c6e6053 +MISC ChangeLog 2810 SHA256 bb7aaf530b006fc98d4e092dc7a3df3e32231365e65972d259d5833b29b59519 SHA512 663bbf7e07f3bd9d3e96e3b7d8490caca535b7fb36f38fce11251d3b38adcd02f76e76f9fb550545c31f7c40dc358c8af20762d6d711f7774bc6e258861d3546 WHIRLPOOL d4c90628ee6d0efef176409e5511dc528f508bcb7e5ee17c5b2480ea365918fe21e0d8b43ea7be6e21b15780ad76148fc5c1eda08264e051de0cb5e59c492394 +MISC ChangeLog-2015 455 SHA256 3c958a67838866f8ea7b985945478ef45a7c480180e1596209592726eda908ca SHA512 4a670eab4b3fb719c473fe69e49266ef4335132ed4913c22534dc6e5be00ccf92fe3fb5a191169165caf3a07e1e5c5bce134e32e0d8470935ea543be3e664a83 WHIRLPOOL 7177ab53cc7298b8710c217cb17a59aead00940ec2732bf3a5de8799ebf707d5c9afe4062a4695fbccb39cf5115767f6feb8200b8a71798430dddfddbfd88be9 +MISC metadata.xml 712 SHA256 3697e5298c72cf90ffdc4ef933efff7f176dbd7bae9eb6ac51680b2170245dfd SHA512 8c8a2c82a2355eb3c2370381a9964ddcf2e80ee367f4c02925f9ef96f6ca4e93bb0650c42d94ef28ddcf52f1a1d8a4902d688c1f183e0ac1d648fb99274a8735 WHIRLPOOL 4ef1deb4a041bc3317756ec48d6c9ba4a16e74eb8eaebd13e598b34603a64a6010e841ad5dab65bb5a9af82f806585f4b51c70562a08181ea024973d57fdca65 diff --git a/sci-astronomy/aatm/aatm-0.6.ebuild b/sci-astronomy/aatm/aatm-0.6.ebuild new file mode 100644 index 000000000000..d1fddc1c7e8e --- /dev/null +++ b/sci-astronomy/aatm/aatm-0.6.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils + +DESCRIPTION="Atmospheric Modelling for ALMA Observatory" +HOMEPAGE="https://svn.cv.nrao.edu/view/aatm/devel/casa/" +# tar ball is made from the HOMEPAGE and running ./configure && make dist +SRC_URI="https://dev.gentoo.org/~bicatali/distfiles/${P}.tar.gz" + +LICENSE="LGPL-2.1" +SLOT="0/4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +RDEPEND="" +DEPEND="${RDEPEND} + dev-libs/boost:= + doc? ( app-doc/doxygen[dot] )" + +src_configure() { + econf $(use_enable static-libs static) +} + +src_compile() { + emake + use doc && doxygen doc/developer.doxy +} + +src_install() { + default + use static-libs || prune_libtool_files --all + if use doc; then + insinto /usr/share/doc/${PF} + doins -r developer/html + fi +} diff --git a/sci-astronomy/aatm/metadata.xml b/sci-astronomy/aatm/metadata.xml new file mode 100644 index 000000000000..658a3f257bb7 --- /dev/null +++ b/sci-astronomy/aatm/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + ATmospheric Modeling for ALMA is a library of routines for modelling + transmission of cm/mm/sub-mm wavelength radiation through the Earths + atmosphere. It is designed to simulate both the absorption/emission + of radiation and the dispersion (i.e., the frequency dependent + refractive index of the atmosphere). +</longdescription> + <upstream> + <remote-id type="launchpad">aatm</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/astrometry/Manifest b/sci-astronomy/astrometry/Manifest new file mode 100644 index 000000000000..d9be0fc3ee61 --- /dev/null +++ b/sci-astronomy/astrometry/Manifest @@ -0,0 +1,12 @@ +AUX astrometry-0.67-dynlink.patch 2411 SHA256 2d973e3a7bd33d6bd80e70097ff0f64b92205f7e1ad2d2e29d7ee6e8bf48be27 SHA512 ac82c83efd419519c08eed4ff487fcc5daaab7c12bb4807d501229b5c75e327a422fbbc9fa0bcd5e41516ec26f74a17081bc985aac9b4bb77baf09712f6f85bc WHIRLPOOL 147cdadfe9ec3b7c6d5857647d3ac9e6772d86f5a2e1f4d280cb0d95b75012e33659d300f5eaa632d2c386f4f012d317d5ee873910ccfe3d87d392471f99882e +AUX astrometry-0.67-qsortr.patch 248 SHA256 917facddfddc87c700459cfa9499b4bd721fd385f0912d96c80cead13391f25b SHA512 99ce5cf9d2d11946a012ff65d6cd4ee7f167ded5f04d5d0f1d68de621f427a0d7e88302c1ebe534296d9dbda3adf608497c40a1bbf82178e3824093dfa510a03 WHIRLPOOL 71f1efee0b7a63c5ab38e5210bd2ec2a5ec6cd5102467298fcc6c411b534b280da35f7010a21f74d382dce6f3e7c2e767e84f58b6466e36b4f85f6857c9b4ed7 +AUX astrometry-0.67-soname.patch 791 SHA256 79f128cfa15e60a53cd9d59f7e04ec286fc085964f47ef9e69d69032e91cd437 SHA512 5e0ecc865986e3a9b065cff57cabe8cc67eb8ae46794ee91215e128d9dfeecff40c7621952246d1bcdcc54514b5eb556c93b099ddefcdb82318b52def835f656 WHIRLPOOL a173b895dab5ab2ee4ea8fe47e47ec6c7a9a8f040e1f7693697cec6e1c2d2e318482c59d2fe8537a9dc7f52df4d6246393bc69dc7dd3b2a4552ff369b059b580 +AUX astrometry-0.72-dynlink.patch 3070 SHA256 96e793c15b2b788abb438585fc8ff88726a2164f0018df3de9f8a9deba6ca55d SHA512 a472dd33cb896ea51cb713e1fad8dedeac2cec546799bd5be606083ffa357963a972e9a32819af7a4373e9316a9ce82c0d70abd46b4c056f4a49f53bba13eb3d WHIRLPOOL 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af5a3566d247a3f46bb641602822563a2f58d73e13c83dc3e1d4de32b28a7534979848931993c4b7d9c89c2e3f96c88ba488c3288bd4f9c42b3bc550c12f33f6 WHIRLPOOL 16cbc9b0cfd17a9207c2aa83a6e286f7867e5f17d806b7db20376bfc790c79d055f3b1785db37ad8003603f2238b7407ca8a3c062aaebda2a6cfa81ae9c8f4aa diff --git a/sci-astronomy/astrometry/astrometry-0.67-r2.ebuild b/sci-astronomy/astrometry/astrometry-0.67-r2.ebuild new file mode 100644 index 000000000000..79cf93d35da2 --- /dev/null +++ b/sci-astronomy/astrometry/astrometry-0.67-r2.ebuild @@ -0,0 +1,108 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit eutils toolchain-funcs python-single-r1 + +MYP=${PN}.net-${PV} + +DESCRIPTION="Automated astrometric calibration programs and service" +HOMEPAGE="http://astrometry.net/" +SRC_URI="https://github.com/dstndstn/astrometry.net/releases/download/${PV}/${MYP}.tar.gz" + +LICENSE="BSD GPL-2 GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-python/astropy[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + media-libs/libpng:0 + media-libs/netpbm + sci-astronomy/wcslib:0= + sci-libs/cfitsio:0= + sci-libs/gsl:0= + sys-libs/zlib:0= + virtual/jpeg:0 + x11-libs/cairo + ${PYTHON_DEPS}" +DEPEND="${RDEPEND} + dev-lang/swig:0 + virtual/pkgconfig" + +S="${WORKDIR}/${MYP}" + +PATCHES=( + "${FILESDIR}"/${P}-soname.patch + "${FILESDIR}"/${P}-dynlink.patch + "${FILESDIR}"/${P}-qsortr.patch +) + +src_prepare() { + default + # fix python scripts + python_fix_shebang "${S}" + sed -e "s|python setup-util.py|${EPYTHON} setup-util.py|" -i util/Makefile || die + sed -e "s|python setup.py|${EPYTHON} setup.py|" -i {libkd,sdss,blind}/Makefile || die + sed -e "s|python -c|${EPYTHON} -c|" -i blind/Makefile || die + sed -e "s|python <<EOF|${EPYTHON} <<EOF|" -i util/simplexy.c || die + sed -e "s|python -V|${EPYTHON} -V|" -i Makefile || die + # respect use compilation flags + sed -e '/-O3/d' -e '/-fomit-frame-pointer/d' -i util/makefile.common || die + # as-needed + sed -e "s|-lm|-lm $($(tc-getPKG_CONFIG) --libs wcslib gsl)|" -i util/Makefile || die + export SYSTEM_GSL=yes +} + +src_compile() { + tc-export CC RANLIB AR + # fragile makefiles, build targets sequentially + emake + emake py + emake extra + emake report.txt +} + +src_test() { + emake test + local d + for d in util blind libkd; do + pushd ${d} > /dev/null + ./test || die "failed tests in ${d}" + popd ${d} > /dev/null + done +} + +ap_make() { + emake \ + INSTALL_DIR="${ED%/}/usr" \ + DATA_INSTALL_DIR="${ED%/}/usr/share/astrometry" \ + LIB_INSTALL_DIR="${ED%/}/usr/$(get_libdir)" \ + ETC_INSTALL_DIR="${ED%/}/etc" \ + MAN1_INSTALL_DIR="${ED%/}/usr/share/man/man1" \ + DOC_INSTALL_DIR="${ED%/}/usr/share/doc/${PF}" \ + EXAMPLE_INSTALL_DIR="${ED%/}/usr/share/doc/${PF}/examples" \ + PY_BASE_INSTALL_DIR="${ED%/}$(python_get_sitedir)/astrometry" \ + PY_BASE_LINK_DIR="../$(python_get_sitedir | sed -e 's|/usr/||')/astrometry" \ + FINAL_DIR="${EPREFIX%/}/usr" \ + DATA_FINAL_DIR="${EPREFIX%/}/usr/share/astrometry" \ + $@ +} + +src_install() { + ap_make install-core + ap_make -C util install + ap_make -C blind install-extra + + # remove duplicates and non installable libraries + rm "${ED}"/usr/bin/{fitscopy,imcopy,listhead} || die + rm "${ED}"/usr/$(get_libdir)/lib*.a || die + rm "${ED}"/usr/share/doc/${PF}/LICENSE || die + + use examples || rm -r "${ED}"/usr/share/doc/${PF}/examples +} diff --git a/sci-astronomy/astrometry/astrometry-0.70.ebuild b/sci-astronomy/astrometry/astrometry-0.70.ebuild new file mode 100644 index 000000000000..99a28b7ec1d6 --- /dev/null +++ b/sci-astronomy/astrometry/astrometry-0.70.ebuild @@ -0,0 +1,108 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit eutils toolchain-funcs python-single-r1 + +MYP=${PN}.net-${PV} + +DESCRIPTION="Automated astrometric calibration programs and service" +HOMEPAGE="http://astrometry.net/" +SRC_URI="https://github.com/dstndstn/astrometry.net/releases/download/${PV}/${MYP}.tar.gz" + +LICENSE="BSD GPL-2 GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-python/astropy[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + media-libs/libpng:0 + media-libs/netpbm + sci-astronomy/wcslib:0= + sci-libs/cfitsio:0= + sci-libs/gsl:0= + sys-libs/zlib:0= + virtual/jpeg:0 + x11-libs/cairo + ${PYTHON_DEPS}" +DEPEND="${RDEPEND} + dev-lang/swig:0 + virtual/pkgconfig" + +S="${WORKDIR}/${MYP}" + +PATCHES=( + "${FILESDIR}"/${PN}-0.67-soname.patch + "${FILESDIR}"/${PN}-0.67-dynlink.patch + "${FILESDIR}"/${PN}-0.67-qsortr.patch +) + +src_prepare() { + default + # fix python scripts + python_fix_shebang "${S}" + sed -e "s|python setup-util.py|${EPYTHON} setup-util.py|" -i util/Makefile || die + sed -e "s|python setup.py|${EPYTHON} setup.py|" -i {libkd,sdss,blind}/Makefile || die + sed -e "s|python -c|${EPYTHON} -c|" -i blind/Makefile || die + sed -e "s|python <<EOF|${EPYTHON} <<EOF|" -i util/simplexy.c || die + sed -e "s|python -V|${EPYTHON} -V|" -i Makefile || die + # respect use compilation flags + sed -e '/-O3/d' -e '/-fomit-frame-pointer/d' -i util/makefile.common || die + # as-needed + sed -e "s|-lm|-lm $($(tc-getPKG_CONFIG) --libs wcslib gsl)|" -i util/Makefile || die + export SYSTEM_GSL=yes +} + +src_compile() { + tc-export CC RANLIB AR + # fragile makefiles, build targets sequentially + emake + emake py + emake extra + emake report.txt +} + +src_test() { + emake test + local d + for d in util blind libkd; do + pushd ${d} > /dev/null + ./test || die "failed tests in ${d}" + popd ${d} > /dev/null + done +} + +ap_make() { + emake \ + INSTALL_DIR="${ED%/}/usr" \ + DATA_INSTALL_DIR="${ED%/}/usr/share/astrometry" \ + LIB_INSTALL_DIR="${ED%/}/usr/$(get_libdir)" \ + ETC_INSTALL_DIR="${ED%/}/etc" \ + MAN1_INSTALL_DIR="${ED%/}/usr/share/man/man1" \ + DOC_INSTALL_DIR="${ED%/}/usr/share/doc/${PF}" \ + EXAMPLE_INSTALL_DIR="${ED%/}/usr/share/doc/${PF}/examples" \ + PY_BASE_INSTALL_DIR="${ED%/}$(python_get_sitedir)/astrometry" \ + PY_BASE_LINK_DIR="../$(python_get_sitedir | sed -e 's|/usr/||')/astrometry" \ + FINAL_DIR="${EPREFIX%/}/usr" \ + DATA_FINAL_DIR="${EPREFIX%/}/usr/share/astrometry" \ + $@ +} + +src_install() { + ap_make install-core + ap_make -C util install + ap_make -C blind install-extra + + # remove duplicates and non installable libraries + rm "${ED}"/usr/bin/{fitscopy,imcopy,listhead} || die + rm "${ED}"/usr/$(get_libdir)/lib*.a || die + rm "${ED}"/usr/share/doc/${PF}/LICENSE || die + + use examples || rm -r "${ED}"/usr/share/doc/${PF}/examples +} diff --git a/sci-astronomy/astrometry/astrometry-0.72.ebuild b/sci-astronomy/astrometry/astrometry-0.72.ebuild new file mode 100644 index 000000000000..0a59e2174f17 --- /dev/null +++ b/sci-astronomy/astrometry/astrometry-0.72.ebuild @@ -0,0 +1,115 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +# this could be a multiple python package +# but the way it is packaged makes it very time consuming. + +PYTHON_COMPAT=( python2_7 ) + +inherit eutils toolchain-funcs python-single-r1 + +MYP=${PN}.net-${PV} + +DESCRIPTION="Automated astrometric calibration programs and service" +HOMEPAGE="http://astrometry.net/" +SRC_URI="https://github.com/dstndstn/astrometry.net/releases/download/${PV}/${MYP}.tar.gz" + +LICENSE="BSD GPL-2 GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-python/astropy[${PYTHON_USEDEP}] + dev-python/fitsio[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + media-libs/libpng:0 + media-libs/netpbm + sci-astronomy/wcslib:0= + sci-libs/cfitsio:0= + sci-libs/gsl:0= + sys-libs/zlib:0= + virtual/jpeg:0 + x11-libs/cairo + ${PYTHON_DEPS}" +DEPEND="${RDEPEND} + dev-lang/swig:0 + virtual/pkgconfig" + +S="${WORKDIR}/${MYP}" + +PATCHES=( + "${FILESDIR}"/${PN}-0.67-soname.patch + "${FILESDIR}"/${PN}-0.67-qsortr.patch +) +# "${FILESDIR}"/${PN}-0.72-dynlink.patch + +src_prepare() { + default + # respect user compilation flags + sed -e '/-O3/d' \ + -e '/-fomit-frame-pointer/d' \ + -i util/makefile.common || die + # fix underlinking + sed -e "s|-lm|-lm $($(tc-getPKG_CONFIG) --libs wcslib gsl)|" \ + -i util/Makefile || die + export SYSTEM_GSL=yes +} + +src_compile() { + tc-export CC RANLIB AR + # fragile makefiles, build targets sequentially + emake + emake py + emake extra + emake report.txt +} + +src_test() { + emake test + local d + for d in util blind libkd; do + pushd ${d} > /dev/null + ./test || die "failed tests in ${d}" + popd ${d} > /dev/null + done +} + +ap_make() { + emake \ + INSTALL_DIR="${ED%/}/usr" \ + DATA_INSTALL_DIR="${ED%/}/usr/share/astrometry" \ + LIB_INSTALL_DIR="${ED%/}/usr/$(get_libdir)" \ + ETC_INSTALL_DIR="${ED%/}/etc" \ + MAN1_INSTALL_DIR="${ED%/}/usr/share/man/man1" \ + DOC_INSTALL_DIR="${ED%/}/usr/share/doc/${PF}" \ + EXAMPLE_INSTALL_DIR="${ED%/}/usr/share/doc/${PF}/examples" \ + PY_BASE_INSTALL_DIR="${ED%/}$(python_get_sitedir)/astrometry" \ + PY_BASE_LINK_DIR="../$(python_get_sitedir | sed -e 's|/usr/||')/astrometry" \ + FINAL_DIR="${EPREFIX%/}/usr" \ + DATA_FINAL_DIR="${EPREFIX%/}/usr/share/astrometry" \ + $@ +} + +src_install() { + ap_make install-core + ap_make -C util install + ap_make -C blind install-extra + + # remove duplicates and non installable libraries + # cfitsio + rm "${ED}"/usr/bin/{fitscopy,imcopy,listhead} || die + # cfitsio utilities + rm "${ED}"/usr/bin/{fitsverify,imarith,imstat,liststruc,modhead,tablist,tabmerge} || die + rm "${ED}"/usr/$(get_libdir)/lib*.a || die + rm "${ED}"/usr/share/doc/${PF}/LICENSE || die + + if use examples; then + docompress -x /usr/share/doc/${PF}/examples + else + rm -r "${ED}"/usr/share/doc/${PF}/examples || die + fi +} diff --git a/sci-astronomy/astrometry/files/astrometry-0.67-dynlink.patch b/sci-astronomy/astrometry/files/astrometry-0.67-dynlink.patch new file mode 100644 index 000000000000..64b87c033ca5 --- /dev/null +++ b/sci-astronomy/astrometry/files/astrometry-0.67-dynlink.patch @@ -0,0 +1,78 @@ +Author: Ole Streicher <olebole@debian.org> +Description: Dynamically link to libastrometry.so, when possible +--- a/blind/Makefile ++++ b/blind/Makefile +@@ -43,9 +43,7 @@ + LDLIBS := $(LDLIBS_DEF) + LDLIBS += $(ANFILES_LIB) + +-SLIB := $(ENGINE_LIB) +-SLIB += $(CATS_SLIB) +-SLIB += $(ANFILES_SLIB) ++SLIB := $(ENGINE_SO) + + CAIRO_SLIB := $(COMMON)/cairoutils.o + CAIRO_SLIB += $(SLIB) +@@ -131,7 +129,7 @@ + resort-xylist.o + + BUILD_INDEX_OBJS := build-index.o uniformize-catalog.o startree2.o hpquads.o \ +- quad-builder.o quad-utils.o codefile.o codetree.o unpermute-stars.o \ ++ quad-builder.o codefile.o codetree.o unpermute-stars.o \ + unpermute-quads.o merge-index.o + ENGINE_OBJS += $(BUILD_INDEX_OBJS) + +@@ -147,8 +145,8 @@ + $(AR) rc $@ $(ENGINE_OBJS) + $(RANLIB) $@ + +-$(ENGINE_SO): $(ENGINE_OBJS) $(SLIB) +- $(CC) $(LDFLAGS) $(SHAREDLIBFLAGS) -Wl,-soname,$@.0 -o $@.0 $^ $(LDLIBS) ++$(ENGINE_SO): $(ENGINE_LIB) $(CATS_SLIB) $(ANFILES_SLIB) ++ $(CC) $(LDFLAGS) $(SHAREDLIBFLAGS) -Wl,-soname,$@.0 -o $@.0 -Wl,--whole-archive $^ -Wl,--no-whole-archive $(LDLIBS) -lpthread + ln -s $@.0 $@ + + # old and miscellaneous executables that aren't part of the pipeline. +--- a/util/Makefile ++++ b/util/Makefile +@@ -86,8 +86,7 @@ + + LDFLAGS += $(LDFLAGS_DEF) + +-LDLIBS := $(LDLIBS_DEF) +-LDLIBS += $(ANFILES_LIB) ++LDLIBS := $(LDLIBS_DEF) -lm + + SHAREDLIBFLAGS := $(SHAREDLIBFLAGS_DEF) + +@@ -122,8 +121,7 @@ + ANUTILS_H_PATH := $(addprefix $(INCLUDE_DIR)/,$(ANUTILS_H)) + + ifndef NO_QFITS +-ANUTILS_OBJ += fitsioutils.o sip_qfits.o fitstable.o fitsbin.o fitsfile.o \ +- tic.o ++ANUTILS_OBJ += fitsioutils.o sip_qfits.o fitstable.o fitsbin.o fitsfile.o + ANUTILS_DEPS += $(QFITS_LIB) + endif + +@@ -164,7 +162,7 @@ + ALL_OBJ += wcs-pv2sip.o + + _util$(PYTHON_SO_EXT): util.i lanczos.i $(ANFILES_SLIB) +- LDFLAGS="$(LDFLAGS)" LDLIBS="$(LDLIBS)" SLIB="$(ANFILES_SLIB)" \ ++ LDFLAGS="$(LDFLAGS)" LDLIBS="-L../blind -lastrometry" \ + INC="$(ANFILES_INC)" CFLAGS="$(CFLAGS)" \ + python setup.py build_ext -v --inplace --build-temp . + util.py: util.i lanczos.i +--- a/libkd/Makefile ++++ b/libkd/Makefile +@@ -90,8 +90,7 @@ + PYSPHEREMATCH_OBJ := pyspherematch.o + + spherematch_c$(PYTHON_SO_EXT): pyspherematch.c setup.py $(SLIB) +- LDFLAGS="$(LDFLAGS)" LDLIBS="$(LDLIBS)" \ +- SLIB="$(SLIB)" \ ++ LDFLAGS="$(LDFLAGS)" LDLIBS="-L../blind -lastrometry" \ + INC="$(INC)" \ + CFLAGS="$(CFLAGS)" \ + python setup.py build_ext --inplace --force --build-temp . diff --git a/sci-astronomy/astrometry/files/astrometry-0.67-qsortr.patch b/sci-astronomy/astrometry/files/astrometry-0.67-qsortr.patch new file mode 100644 index 000000000000..6a7868884eaa --- /dev/null +++ b/sci-astronomy/astrometry/files/astrometry-0.67-qsortr.patch @@ -0,0 +1,10 @@ +--- a/util/test_qsort_r.c 2016-11-17 00:21:29.211561563 +0000 ++++ b/util/test_qsort_r.c 2016-11-17 00:21:43.281493095 +0000 +@@ -5,6 +5,7 @@ + #include <stdio.h> + #include <string.h> + #include <stdarg.h> ++#include <stdlib.h> + + #include "cutest.h" + diff --git a/sci-astronomy/astrometry/files/astrometry-0.67-soname.patch b/sci-astronomy/astrometry/files/astrometry-0.67-soname.patch new file mode 100644 index 000000000000..595dd79a2f46 --- /dev/null +++ b/sci-astronomy/astrometry/files/astrometry-0.67-soname.patch @@ -0,0 +1,25 @@ +Author: Ole Streicher <olebole@debian.org> +Description: Add SONAME to libastrometry.so +--- a/blind/Makefile ++++ b/blind/Makefile +@@ -148,7 +148,8 @@ + $(RANLIB) $@ + + $(ENGINE_SO): $(ENGINE_OBJS) $(SLIB) +- $(CC) $(LDFLAGS) $(SHAREDLIBFLAGS) -o $@ $^ $(LDLIBS) ++ $(CC) $(LDFLAGS) $(SHAREDLIBFLAGS) -Wl,-soname,$@.0 -o $@.0 $^ $(LDLIBS) ++ ln -s $@.0 $@ + + # old and miscellaneous executables that aren't part of the pipeline. + OLDEXECS := plotquads rawstartree checkquads +@@ -233,8 +234,8 @@ + done + mkdir -p '$(LIB_INSTALL_DIR)' + @for x in $(INSTALL_LIB); do \ +- echo cp $$x '$(LIB_INSTALL_DIR)'; \ +- cp $$x '$(LIB_INSTALL_DIR)'; \ ++ echo cp -d $$x* '$(LIB_INSTALL_DIR)'; \ ++ cp -d $$x* '$(LIB_INSTALL_DIR)'; \ + done + mkdir -p '$(PY_INSTALL_DIR)' + @for x in $(PYTHON_INSTALL); do \ diff --git a/sci-astronomy/astrometry/files/astrometry-0.72-dynlink.patch b/sci-astronomy/astrometry/files/astrometry-0.72-dynlink.patch new file mode 100644 index 000000000000..371a2129bd58 --- /dev/null +++ b/sci-astronomy/astrometry/files/astrometry-0.72-dynlink.patch @@ -0,0 +1,92 @@ +From: Ole Streicher <olebole@debian.org> +Date: Thu, 1 Dec 2016 21:18:56 +0100 +Subject: Dynamically link to libastrometry.so, when possible + +--- + blind/Makefile | 10 ++++------ + libkd/Makefile | 3 +-- + util/Makefile | 8 +++----- + 3 files changed, 8 insertions(+), 13 deletions(-) + +diff --git a/blind/Makefile b/blind/Makefile +index 33895df..6e7c55c 100644 +--- a/blind/Makefile ++++ b/blind/Makefile +@@ -43,9 +43,7 @@ LDFLAGS := $(LDFLAGS_DEF) + LDLIBS := $(LDLIBS_DEF) + LDLIBS += $(ANFILES_LIB) + +-SLIB := $(ENGINE_LIB) +-SLIB += $(CATS_SLIB) +-SLIB += $(ANFILES_SLIB) ++SLIB := $(ENGINE_SO) + + CAIRO_SLIB := $(COMMON)/cairoutils.o + CAIRO_SLIB += $(SLIB) +@@ -131,7 +129,7 @@ ENGINE_OBJS += new-wcs.o fits-guess-scale.o cut-table.o \ + resort-xylist.o + + BUILD_INDEX_OBJS := build-index.o uniformize-catalog.o startree2.o hpquads.o \ +- quad-builder.o quad-utils.o codefile.o codetree.o unpermute-stars.o \ ++ quad-builder.o codefile.o codetree.o unpermute-stars.o \ + unpermute-quads.o merge-index.o + ENGINE_OBJS += $(BUILD_INDEX_OBJS) + +@@ -147,8 +145,8 @@ $(ENGINE_LIB): $(ENGINE_OBJS) + $(AR) rc $@ $(ENGINE_OBJS) + $(RANLIB) $@ + +-$(ENGINE_SO): $(ENGINE_OBJS) $(SLIB) +- $(CC) $(LDFLAGS) $(SHAREDLIBFLAGS) -Wl,-soname,$@.0 -o $@.0 $^ $(LDLIBS) ++$(ENGINE_SO): $(ENGINE_LIB) $(CATS_SLIB) $(ANFILES_SLIB) ++ $(CC) $(LDFLAGS) $(SHAREDLIBFLAGS) -Wl,-soname,$@.0 -o $@.0 -Wl,--whole-archive $^ -Wl,--no-whole-archive $(LDLIBS) -lpthread + ln -s $@.0 $@ + + # old and miscellaneous executables that aren't part of the pipeline. +diff --git a/libkd/Makefile b/libkd/Makefile +index f535986..0442518 100644 +--- a/libkd/Makefile ++++ b/libkd/Makefile +@@ -90,8 +90,7 @@ py: pyspherematch + PYSPHEREMATCH_OBJ := pyspherematch.o + + spherematch_c$(PYTHON_SO_EXT): pyspherematch.c setup.py $(SLIB) +- LDFLAGS="$(LDFLAGS)" LDLIBS="$(LDLIBS)" \ +- SLIB="$(SLIB)" \ ++ LDFLAGS="$(LDFLAGS)" LDLIBS="-L../blind -lastrometry" \ + INC="$(INC)" \ + CFLAGS="$(CFLAGS)" \ + $(PYTHON) setup.py build_ext --inplace --force --build-temp . +diff --git a/util/Makefile b/util/Makefile +index f88df1b..0ecf716 100644 +--- a/util/Makefile ++++ b/util/Makefile +@@ -86,8 +86,7 @@ CFLAGS += -I. + + LDFLAGS += $(LDFLAGS_DEF) + +-LDLIBS := $(LDLIBS_DEF) +-LDLIBS += $(ANFILES_LIB) ++LDLIBS := $(LDLIBS_DEF) -lm + + SHAREDLIBFLAGS := $(SHAREDLIBFLAGS_DEF) + +@@ -122,8 +121,7 @@ ANUTILS_H := an-bool.h an-endian.h an-opts.h an-thread-pthreads.h \ + ANUTILS_H_PATH := $(addprefix $(INCLUDE_DIR)/,$(ANUTILS_H)) + + ifndef NO_QFITS +-ANUTILS_OBJ += fitsioutils.o sip_qfits.o fitstable.o fitsbin.o fitsfile.o \ +- tic.o ++ANUTILS_OBJ += fitsioutils.o sip_qfits.o fitstable.o fitsbin.o fitsfile.o + ANUTILS_DEPS += $(QFITS_LIB) + endif + +@@ -164,7 +162,7 @@ wcs-pv2sip: wcs-pv2sip.o $(ANUTILS_SLIB) + ALL_OBJ += wcs-pv2sip.o + + _util$(PYTHON_SO_EXT): util.i lanczos.i $(ANFILES_SLIB) +- LDFLAGS="$(LDFLAGS)" LDLIBS="$(LDLIBS)" SLIB="$(ANFILES_SLIB)" \ ++ LDFLAGS="$(LDFLAGS)" LDLIBS="-L../blind -lastrometry" \ + INC="$(ANFILES_INC)" CFLAGS="$(CFLAGS)" \ + $(PYTHON) setup.py build_ext -v --inplace --build-temp . + util.py: util.i lanczos.i diff --git a/sci-astronomy/astrometry/metadata.xml b/sci-astronomy/astrometry/metadata.xml new file mode 100644 index 000000000000..2e748354d4f7 --- /dev/null +++ b/sci-astronomy/astrometry/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + If you have astronomical imaging of the sky with celestial + coordinates you do not know—or do not trust—then Astrometry.net is + for you. Input an image and we'll give you back astrometric + calibration meta-data, plus lists of known objects falling inside + the field of view. +</longdescription> +<upstream> + <remote-id type="github">dstndstn/astrometry.net</remote-id> +</upstream> +</pkgmetadata> diff --git a/sci-astronomy/casa-data/Manifest b/sci-astronomy/casa-data/Manifest new file mode 100644 index 000000000000..a8bdb7acd2bb --- /dev/null +++ b/sci-astronomy/casa-data/Manifest @@ -0,0 +1,8 @@ +DIST casa-data-20160222.tar.Z 12333481 SHA256 196ae7a212a71898ed22eab6dcf92f09cf4276ab160eaefdc041847af0c88b3e SHA512 4b246b163f9754587b2d917db050ab3fa5e661f27b4a5a879d60abee4132503ce700c2d1b1a88cd5cf96a3c093cb3b9489b2b31781f7084ed0d9bd5a4bcbdd6b WHIRLPOOL a7223281cbe91a75d96f52f020ee8e89c38e2ce1f32dac7776d406f82ec64a2d0c5c27ea08b57c9a1061915db70cc579c85ed9f5141f4b5cccf52bda601c5537 +DIST casa-data-20170703.tar.Z 12421015 SHA256 2766a008603054a03a4b78d97e4acd865cbdc99738585670f18598d623d9d450 SHA512 dc0de856da4146ed356fbfcb522b427bb6a66fb08affdf0bfe803b21305ac37eff9b1790ede58acc993df2f22d620982f10b42f631457258d1620702c10d87b1 WHIRLPOOL 9231e1502164775a55c3e20f24f8968906e19bf36e45f5cb3e4a10b03cd5e08d0270cce253f736d8c761b241852008b5e676e86e5bb88233ffc77756d9216d5c +EBUILD casa-data-20160222.ebuild 516 SHA256 2e8c1c01634e705e4b5c87829164d890e35c5eb4197e85962040376d362be0cc SHA512 90334cdc08332a03e62f98cbf5bf0d5361afeb2c7366c0384acc87b190c37376c3b89bc0b8e7e504b4acc7f7f0637f5c8c17f8992d399de445863378de359299 WHIRLPOOL 374df5f66e51fb3c797624a9d7506fc7f7284c07a5ed24745fdaea7eb3263c32e17687ae0e28024d244cb4957439d6a5521ce42a76d3f34ad4df3fe433a22195 +EBUILD casa-data-20170703.ebuild 516 SHA256 49ce4cb5845096709597d0c1c093e956d714a86a6d9205251af1f71b50c1788d SHA512 ec78f3c5f1924ddac07979590dfc1f8855f3aba3e9f327a936f1d8d68d3b02c3839d00587c0a70379f00bb27ea8d2dea6c87e959e49531f0c527a97c1a148e76 WHIRLPOOL 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v2 + +EAPI=6 + +MYPN=WSRT_Measures + +DESCRIPTION="Data and tables for the CASA software" +HOMEPAGE="https://github.com/casacore/casacore/" +SRC_URI="ftp://ftp.astron.nl/outgoing/Measures/${MYPN}_${PV}-000001.ztar -> ${P}.tar.Z" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="LGPL-3" +SLOT="0" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_install(){ + insinto /usr/share/casa/data + doins -r * +} diff --git a/sci-astronomy/casa-data/casa-data-20170703.ebuild b/sci-astronomy/casa-data/casa-data-20170703.ebuild new file mode 100644 index 000000000000..ac7ef1f7f4f3 --- /dev/null +++ b/sci-astronomy/casa-data/casa-data-20170703.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +MYPN=WSRT_Measures + +DESCRIPTION="Data and tables for the CASA software" +HOMEPAGE="https://github.com/casacore/casacore/" +SRC_URI="ftp://ftp.astron.nl/outgoing/Measures/${MYPN}_${PV}-000001.ztar -> ${P}.tar.Z" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="LGPL-3" +SLOT="0" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_install(){ + insinto /usr/share/casa/data + doins -r * +} diff --git a/sci-astronomy/casa-data/casa-data-99999.ebuild b/sci-astronomy/casa-data/casa-data-99999.ebuild new file mode 100644 index 000000000000..d18eed7b8696 --- /dev/null +++ b/sci-astronomy/casa-data/casa-data-99999.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 +inherit subversion + +ESVN_REPO_URI="https://svn.cv.nrao.edu/svn/casa-data/distro" +ESVN_OPTIONS="--non-interactive --trust-server-cert " + +DESCRIPTION="Data and tables for the CASA software" +HOMEPAGE="https://safe.nrao.edu/wiki/bin/view/Software/ObtainingCasaDataRepository" +SRC_URI="" + +KEYWORDS="" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/distro" + +src_install(){ + insinto /usr/share/casa/data + doins -r * +} diff --git a/sci-astronomy/casa-data/metadata.xml b/sci-astronomy/casa-data/metadata.xml new file mode 100644 index 000000000000..8d1cad886212 --- /dev/null +++ b/sci-astronomy/casa-data/metadata.xml @@ -0,0 +1,15 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + Observatory tables, ephemerides and other software data related to + the Common Astronomy Software Applications (CASA) suite. + </longdescription> + <upstream> + <remote-id type="github">casacore/casacore</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/casacore/Manifest b/sci-astronomy/casacore/Manifest new file mode 100644 index 000000000000..07f93e63d2a7 --- /dev/null +++ b/sci-astronomy/casacore/Manifest @@ -0,0 +1,14 @@ +AUX casacore-2.3.0-disable-class-and-collaboration-graph-generation.patch 1586 SHA256 5fef62d562425b6f64f2ab486297ed14dc9dafa6cda34106c757e3e9db7840cc SHA512 b551689d2591d56a2b032a4c3bd8b5e1f2206d362017095291aa6cb00a6ee3dd8fbe2d9e2675b95bb994b5e4622067d1b1e5bddcff6bb6658f83400789e6dae6 WHIRLPOOL 32bbdfa7791e608a381b952f0fdbf5672aacb99d34b01edf6d2ce3fd014cf4e9bad2f65b6041dada451e9395f8641fbd2d5a4efd5d55fe927bdcf395523d75ee +AUX casacore-2.3.0-disable-known-test-failures.patch 4983 SHA256 8b77432e8c2ebf8e1f6ea241ad82f7a76da3b8ec0bdea9f3e5f61350dfad9b21 SHA512 cd796961ef98facd5eb82f515b7ea001dddd758ca06c202b81d6de8dccdcefa1bbaf98d6635318cff45381feabd75fd13c10fa47338acfb96b582624f70d047c WHIRLPOOL 24683a982e61611163f8db41e5b26429652cb1f01d20bcc8ad38401a8b56311a2fb262230cd86bdba444ada69db65737a17bd120e2507f4ce08463faea0454a0 +AUX casacore-2.3.0-disable-tests-that-require-data-tables.patch 7001 SHA256 2ab4fd2c785a64b91d7bda65825ffdca024b4b138677b4b41e7befa17044b9f3 SHA512 322f6373fb3d46416141da2c631285dae8c32114b67dc2a466a31576353ddc39341363911f63c3116d0dfa35975bb370188519b8483ca3863040b05d4d1031dd WHIRLPOOL 0f3a5478083e9893d384527e0b0b45289d0e1763b8c21f1442bd259d25e8155865f30ec8b4040fb1718abca0f950a7714fe8b5aa119c202c98f9288ecdd30f19 +AUX casacore-2.3.0-do-not-install-test-and-demonstration-executables.patch 1417 SHA256 93bac83fcd1b4afdc4aa845676a5aa4d65d93fa6efca465c58287ab234b2cd25 SHA512 dc9c51afb107914cb5525dd2ba298716011e7e059893798235511637efada0ed23b5af1b35146a0841a18d4da2262ea933bb0e1745f07cd2d96cbc9566ae4e21 WHIRLPOOL 8f35fe87ac84d9f4e1c4d63c0327b1369f242e4e3fefc0392c89c694ca31ff42735d57ba792e22e78463515b0abebb6964b75413993b4079397261ba936f10fa +AUX casacore-2.3.0-fix-FTBFS-tStatisticsUtilities-tLatticeStatistics-and-tLC.patch 10447 SHA256 219785c8b536a17422422439665d96db7abe6c73b5e15cdcfbedd89360b9d31e SHA512 57ee53e982ae4322e6fc9cb4c625190dd18abb5e0e728b72bba4a36be524dc80537c4d93e6fe6a51b6387d6df1a676bed2221d9d5ca87139c64c32f20d190af9 WHIRLPOOL b4f0241c7ab9b3ba06b04a6f0d7149174a1621d44643552b6cf5fcda4449b5828a31dc1f73b1716a7837dc8296b37bc800333be2cb86fedc008fbe38c608c99f +AUX casacore-2.3.0-fix-too-small-int-type-for-memory-on-32-bit-machines.patch 3593 SHA256 29cabacfc8da902bacc765e24ec15a4bd6a65cd81a0109f634704c1ff076acd1 SHA512 d1db6bb4f92993fd09d948ba7f344adede3681ab9bc6c30aa743f454dd162900448dd7d5d710eb2f15fa421d95e5361d6c5c13fc8699b0994d7a5fdb7ba22f02 WHIRLPOOL d79d009c4b5c975ab248919aa8dc0480d9199200e6070425e5f240a37a28b9ea782d73352ec108a07d915d94491e157e1184d42f31d5d5bc34627f0cddd3c533 +AUX casacore-2.3.0-loose-some-tests-tFFTServer-tests.patch 1612 SHA256 cc95ad182a4fe1ad6209d8a8fb7717b8b065137e8fd7c6ab532436fe171f443f SHA512 266c26f6b7bbf8f7aa613c4b2fd97c3f8d8101a481218b1e6e3168e0341cfb9834766fa7d45d9f1d1504d86d483025da5f51346137147743060bdc3ee663a0f7 WHIRLPOOL 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100644 index 000000000000..5a34284e77c2 --- /dev/null +++ b/sci-astronomy/casacore/casacore-2.3.0-r1.ebuild @@ -0,0 +1,112 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit cmake-utils eutils toolchain-funcs fortran-2 python-r1 + +DESCRIPTION="Core libraries for the Common Astronomy Software Applications" +HOMEPAGE="https://github.com/casacore/casacore" +SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +SLOT="0" +IUSE="+c++11 +data doc fftw hdf5 openmp python threads test" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +RDEPEND=" + sci-astronomy/wcslib:0= + sci-libs/cfitsio:0= + sys-libs/readline:0= + virtual/blas:= + virtual/lapack:= + data? ( sci-astronomy/casa-data ) + fftw? ( sci-libs/fftw:3.0= ) + hdf5? ( sci-libs/hdf5:0= ) + python? ( + ${PYTHON_DEPS} + dev-libs/boost:0=[python,${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) +" +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen ) + test? ( sci-astronomy/casa-data ) +" + +PATCHES=( + "${FILESDIR}"/${PN}-2.3.0-disable-class-and-collaboration-graph-generation.patch + "${FILESDIR}"/${PN}-2.3.0-disable-known-test-failures.patch + "${FILESDIR}"/${PN}-2.3.0-disable-tests-that-require-data-tables.patch + "${FILESDIR}"/${PN}-2.3.0-do-not-install-test-and-demonstration-executables.patch + "${FILESDIR}"/${PN}-2.3.0-fix-FTBFS-tStatisticsUtilities-tLatticeStatistics-and-tLC.patch + "${FILESDIR}"/${PN}-2.3.0-fix-too-small-int-type-for-memory-on-32-bit-machines.patch + "${FILESDIR}"/${PN}-2.3.0-loose-some-tests-tFFTServer-tests.patch + "${FILESDIR}"/${PN}-2.3.0-make-the-check-for-NFS-a-bit-more-portable-BSD.patch + "${FILESDIR}"/${PN}-2.3.0-use-the-correct-symbol-to-detect-Linux-OS.patch +) + +pkg_pretend() { + if [[ $(tc-getCC)$ == *gcc* ]] && [[ ${MERGE_TYPE} != binary ]]; then + use c++11 && [[ $(gcc-major-version) -lt 4 ]] || \ + ( [[ $(gcc-major-version) -eq 4 && $(gcc-minor-version) -lt 7 ]] ) && \ + die "You are using gcc but gcc-4.7 or higher is required for C++11" + fi + use openmp && tc-check-openmp +} + +src_prepare() { + cmake-utils_src_prepare + sed -e '/python-py/s/^.*$/find_package(Boost REQUIRED COMPONENTS python)/' \ + -i python3/CMakeLists.txt || die +} + +src_configure() { + has_version sci-libs/hdf5[mpi] && export CXX=mpicxx + local mycmakeargs=( + -DENABLE_SHARED=ON + -DBUILD_PYTHON=OFF + -DDATA_DIR="${EPREFIX}/usr/share/casa/data" + -DBUILD_TESTING="$(usex test)" + -DCXX11="$(usex c++11)" + -DUSE_FFTW3="$(usex fftw)" + -DUSE_HDF5="$(usex hdf5)" + -DUSE_OPENMP="$(usex openmp)" + -DUSE_THREADS="$(usex threads)" + ) + python_set_options() { + if python_is_python3; then + mycmakeargs+=( + -DPYTHON3_EXECUTABLE="${PYTHON}" + -DBUILD_PYTHON3=ON + ) + else + mycmakeargs+=( + -DPYTHON2_EXECUTABLE="${PYTHON}" + -DBUILD_PYTHON=ON + ) + fi + } + use python && python_foreach_impl python_set_options + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + doxygen doxygen.cfg || die + fi +} + +src_install(){ + cmake-utils_src_install + if use doc; then + insinto /usr/share/doc/${PF} + doins -r doc/html + docompress -x /usr/share/doc/${PF}/html + fi +} diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-disable-class-and-collaboration-graph-generation.patch b/sci-astronomy/casacore/files/casacore-2.3.0-disable-class-and-collaboration-graph-generation.patch new file mode 100644 index 000000000000..d06af1e6e319 --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-disable-class-and-collaboration-graph-generation.patch @@ -0,0 +1,43 @@ +From: Benda Xu <heroxbd@gentoo.org> +Date: Thu, 11 Sep 2014 18:20:44 +0900 +Subject: Disable class and collaboration graph generation + +The graphviz-generated class and collaboration graph +occupies 1GB disk space. It is too big to deal with. We turn them +off only to save space. Output image format is specified as svg to +further save space (bug #751947). +--- + doxygen.cfg | 6 +++--- + 1 file changed, 3 insertions(+), 3 deletions(-) + +diff --git a/doxygen.cfg b/doxygen.cfg +index 9071e88..94b7ccb 100644 +--- a/doxygen.cfg ++++ b/doxygen.cfg +@@ -2103,7 +2103,7 @@ DOT_FONTPATH = + # The default value is: YES. + # This tag requires that the tag HAVE_DOT is set to YES. + +-CLASS_GRAPH = YES ++CLASS_GRAPH = NO + + # If the COLLABORATION_GRAPH tag is set to YES then doxygen will generate a + # graph for each documented class showing the direct and indirect implementation +@@ -2112,7 +2112,7 @@ CLASS_GRAPH = YES + # The default value is: YES. + # This tag requires that the tag HAVE_DOT is set to YES. + +-COLLABORATION_GRAPH = YES ++COLLABORATION_GRAPH = NO + + # If the GROUP_GRAPHS tag is set to YES then doxygen will generate a graph for + # groups, showing the direct groups dependencies. +@@ -2215,7 +2215,7 @@ DIRECTORY_GRAPH = NO + # The default value is: png. + # This tag requires that the tag HAVE_DOT is set to YES. + +-DOT_IMAGE_FORMAT = png ++DOT_IMAGE_FORMAT = svg + + # If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to + # enable generation of interactive SVG images that allow zooming and panning. diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-disable-known-test-failures.patch b/sci-astronomy/casacore/files/casacore-2.3.0-disable-known-test-failures.patch new file mode 100644 index 000000000000..c26619f28c27 --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-disable-known-test-failures.patch @@ -0,0 +1,158 @@ +From: Ole Streicher <olebole@debian.org> +Date: Fri, 2 Dec 2016 11:11:28 +0100 +Subject: Disable known test failures +MIME-Version: 1.0 +Content-Type: text/plain; charset="utf-8" +Content-Transfer-Encoding: 8bit + +Disable tPath test + +sbuild gets HOME variable leaked into the build environment. Debian +uses sbuild as official build farm. Until the cause is pinned down, +this test is disabled. + + 98/425 Test #101: tPath ...............................***Failed 0.64 sec +1,16d0 +< expanded: /home/heroxbd +< expected: /«PKGBUILDDIR» +< absolute: /home/heroxbd +< expected: /«PKGBUILDDIR» +< expanded: /home/heroxbd/test/test2 +< expected: /«PKGBUILDDIR»/test/test2 +< absolute: /home/heroxbd/test/test2 +< expected: /«PKGBUILDDIR»/test/test2 +< expanded: /home/heroxbd/test +< expected: /«PKGBUILDDIR»/test +< absolute: /home/heroxbd/test +< expected: /«PKGBUILDDIR»/test +< expanded: /home/heroxbd/test +< expected: /«PKGBUILDDIR»/test +< absolute: /home/heroxbd/test +< expected: /«PKGBUILDDIR»/test +33a18 +> OK +FAIL (output not verified): ./tPath + +Disable tLSQaips and tLSQFit tests + +These tests fail, probably due to the test itself. From +https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=838424#15 + +I'm not sure what to do about the other two tests that fail on arm64, +"tLSQaips" and "tLSQFit", because those two generate a load of output +text containing floating-point numbers and compare that text with an +expected output. It might not be so easy to make that work on all +architectures. Perhaps one could simply disable those two tests. +Preferably one would still run them, so that we can see what happens +in the logs, but not have the build fail if only those tests fail. +--- + casa/IO/test/CMakeLists.txt | 4 ++-- + casa/OS/test/CMakeLists.txt | 9 ++++----- + images/Images/test/CMakeLists.txt | 2 +- + lattices/LatticeMath/test/CMakeLists.txt | 2 +- + scimath/Fitting/test/CMakeLists.txt | 4 ++-- + tables/TaQL/test/CMakeLists.txt | 4 ++-- + 6 files changed, 12 insertions(+), 13 deletions(-) + +diff --git a/casa/IO/test/CMakeLists.txt b/casa/IO/test/CMakeLists.txt +index 188a6c4..3187b60 100644 +--- a/casa/IO/test/CMakeLists.txt ++++ b/casa/IO/test/CMakeLists.txt +@@ -3,9 +3,9 @@ tAipsIOCarray + tAipsIO + tBucketBuffered + tBucketCache +-tBucketFile ++# tBucketFile # https://github.com/casacore/casacore/issues/73 + tBucketMapped +-tByteIO ++# tByteIO # https://github.com/casacore/casacore/issues/73 + tByteSink + tByteSinkSource + tFilebufIO +diff --git a/casa/OS/test/CMakeLists.txt b/casa/OS/test/CMakeLists.txt +index 520ceed..e5c9ee3 100644 +--- a/casa/OS/test/CMakeLists.txt ++++ b/casa/OS/test/CMakeLists.txt +@@ -3,10 +3,10 @@ tCanonicalConversion + tConversion + tConversionPerf + tDataConversion +-tDirectory ++# tDirectory # https://github.com/casacore/casacore/issues/73 + tDirectoryIterator + tEnvVar +-tFile ++# tFile # https://github.com/casacore/casacore/issues/73 + tHostInfo + tIBMConversion + tLECanonicalConversion +@@ -14,10 +14,9 @@ tMemory + tMemoryTrace + tModcompConversion + tMutex +-tPath + tPrecTimer +-tRegularFile +-tSymLink ++# tRegularFile # https://github.com/casacore/casacore/issues/73 ++# tSymLink # https://github.com/casacore/casacore/issues/73 + tTime + tTimer + tVAXConversion +diff --git a/images/Images/test/CMakeLists.txt b/images/Images/test/CMakeLists.txt +index 4115c29..6865919 100644 +--- a/images/Images/test/CMakeLists.txt ++++ b/images/Images/test/CMakeLists.txt +@@ -69,7 +69,7 @@ tMIRIADImage + # tPagedImage2 # requires geodetic/Observatories + # tRebinImage # requires geodetic/Observatories + tSubImage +-tTempImage ++# tTempImage # https://github.com/casacore/casacore/issues/543 + ) + + foreach (test ${tests}) +diff --git a/lattices/LatticeMath/test/CMakeLists.txt b/lattices/LatticeMath/test/CMakeLists.txt +index 47e5c76..23f254f 100644 +--- a/lattices/LatticeMath/test/CMakeLists.txt ++++ b/lattices/LatticeMath/test/CMakeLists.txt +@@ -11,7 +11,7 @@ tLatticeHistograms + tLatticeMathUtil + tLatticeSlice1D + tLatticeStatistics +-tLatticeStatsDataProvider ++# tLatticeStatsDataProvider # tries to allocate a 1024*1024*1024 array, which is at least 4GiB + tLatticeTwoPtCorr + # tLattStatsSpecialize + ) +diff --git a/scimath/Fitting/test/CMakeLists.txt b/scimath/Fitting/test/CMakeLists.txt +index 35d258f..de69738 100644 +--- a/scimath/Fitting/test/CMakeLists.txt ++++ b/scimath/Fitting/test/CMakeLists.txt +@@ -3,8 +3,8 @@ dConstraints + dLSQFit + tFitGaussian + tLinearFitSVD +-tLSQaips +-tLSQFit ++#tLSQaips ++#tLSQFit + tNonLinearFitLM + ) + +diff --git a/tables/TaQL/test/CMakeLists.txt b/tables/TaQL/test/CMakeLists.txt +index 9cf5223..1fcd338 100644 +--- a/tables/TaQL/test/CMakeLists.txt ++++ b/tables/TaQL/test/CMakeLists.txt +@@ -35,8 +35,8 @@ tTaQLNode + # Only test scripts, no test programs. + set (testscripts + ttaql +-tTableGramCretab +-tTableGramAlttab ++# tTableGramCretab # https://github.com/casacore/casacore/issues/541 ++# tTableGramAlttab # https://github.com/casacore/casacore/issues/541 + tTableGramUpdate + tTableGramMasked + tTableGramNull diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-disable-tests-that-require-data-tables.patch b/sci-astronomy/casacore/files/casacore-2.3.0-disable-tests-that-require-data-tables.patch new file mode 100644 index 000000000000..b7e39f2528a9 --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-disable-tests-that-require-data-tables.patch @@ -0,0 +1,253 @@ +From: Benda Xu <heroxbd@gentoo.org> +Date: Wed, 10 Sep 2014 10:00:43 +0900 +Subject: Disable tests that require data tables + +The data tables are not available during the build of casacore (yet). +--- + coordinates/Coordinates/test/CMakeLists.txt | 12 ++++----- + images/Images/test/CMakeLists.txt | 40 ++++++++++++++--------------- + images/Regions/test/CMakeLists.txt | 8 +++--- + lattices/LatticeMath/test/CMakeLists.txt | 2 +- + meas/MeasUDF/test/CMakeLists.txt | 2 +- + measures/Measures/test/CMakeLists.txt | 37 ++++++++++++-------------- + measures/TableMeasures/test/CMakeLists.txt | 2 +- + ms/MSOper/test/CMakeLists.txt | 6 ++--- + ms/MeasurementSets/test/CMakeLists.txt | 2 +- + 9 files changed, 53 insertions(+), 58 deletions(-) + +diff --git a/coordinates/Coordinates/test/CMakeLists.txt b/coordinates/Coordinates/test/CMakeLists.txt +index bd1c996..248b395 100644 +--- a/coordinates/Coordinates/test/CMakeLists.txt ++++ b/coordinates/Coordinates/test/CMakeLists.txt +@@ -1,18 +1,18 @@ + set (tests +-dCoordinates ++#dCoordinates # requires geodetic/Observatories + dRemoveAxes + dWorldMap + tCoordinate +-tCoordinateSystem +-tCoordinateUtil ++# tCoordinateSystem # requires geodetic/Observatories ++# tCoordinateUtil # requires geodetic/Observatories + tDirectionCoordinate +-tFrequencyAligner ++# tFrequencyAligner # requires geodetic/Observatories + tGaussianConvert + tLinearCoordinate + tLinearXform +-tObsInfo ++# tObsInfo # requires geodetic/Observatories + tProjection +-tSpectralCoordinate ++# tSpectralCoordinate # requires geodetic/Observatories + tStokesCoordinate + tQualityCoordinate + tTabularCoordinate +diff --git a/images/Images/test/CMakeLists.txt b/images/Images/test/CMakeLists.txt +index 302d798..4115c29 100644 +--- a/images/Images/test/CMakeLists.txt ++++ b/images/Images/test/CMakeLists.txt +@@ -35,39 +35,39 @@ endforeach (file) + + set (tests + dImageInterface +-dImageStatistics +-dImageSummary ++# dImageStatistics # requires geodetic/Observatories ++# dImageSummary # requires geodetic/Observatories + dPagedImage + tExtendImage +-tFITSErrorImage ++# tFITSErrorImage # + tFITSExtImage + tFITSExtImageII + tFITSImage + tFITSImgParser +-tFITSQualityImage ++# tFITSQualityImage # + tHDF5Image +-tImageAttrHandler +-tImageBeamSet +-tImageConcat +-tImageEmpty +-tImageExpr +-tImageExpr2 +-tImageExpr2Gram +-tImageExpr3Gram ++# tImageAttrHandler # requires geodetic/Observatories ++# tImageBeamSet # ++# tImageConcat # needs casacore-data ++# tImageEmpty # requires geodetic/Observatories ++# tImageExpr ++# tImageExpr2 ++# tImageExpr2Gram # requires geodetic/Observatories ++# tImageExpr3Gram # requires geodetic/Observatories + tImageExprGram + tImageExprParse + tImageExprParse_addDir + tImageInfo +-tImageProxy +-tImageRegrid ++# tImageProxy ++# tImageRegrid # requires geodetic/Observatories + tImageStatistics +-tImageStatistics2 +-tImageUtilities +-tLELSpectralIndex ++# tImageStatistics2 # requires geodetic/Observatories ++# tImageUtilities # requires geodetic/Observatories ++# tLELSpectralIndex # requires geodetic/Observatories + tMIRIADImage +-tPagedImage +-tPagedImage2 +-tRebinImage ++# tPagedImage # requires geodetic/Observatories ++# tPagedImage2 # requires geodetic/Observatories ++# tRebinImage # requires geodetic/Observatories + tSubImage + tTempImage + ) +diff --git a/images/Regions/test/CMakeLists.txt b/images/Regions/test/CMakeLists.txt +index b94c391..1201346 100644 +--- a/images/Regions/test/CMakeLists.txt ++++ b/images/Regions/test/CMakeLists.txt +@@ -9,12 +9,12 @@ foreach (file ${datafiles}) + endforeach (file) + + set (tests +-tImageRegion ++# tImageRegion + tRegionHandler +-tWCBox +-tWCEllipsoid ++# tWCBox # requires geodetic/Observatories ++# tWCEllipsoid + tWCExtension +-tWCLELMask ++# tWCLELMask # requires geodetic/Observatories + tWCUnion + ) + +diff --git a/lattices/LatticeMath/test/CMakeLists.txt b/lattices/LatticeMath/test/CMakeLists.txt +index 0d869d5..47e5c76 100644 +--- a/lattices/LatticeMath/test/CMakeLists.txt ++++ b/lattices/LatticeMath/test/CMakeLists.txt +@@ -13,7 +13,7 @@ tLatticeSlice1D + tLatticeStatistics + tLatticeStatsDataProvider + tLatticeTwoPtCorr +-tLattStatsSpecialize ++# tLattStatsSpecialize + ) + + foreach (test ${tests}) +diff --git a/meas/MeasUDF/test/CMakeLists.txt b/meas/MeasUDF/test/CMakeLists.txt +index a2ecd9a..b06ee99 100644 +--- a/meas/MeasUDF/test/CMakeLists.txt ++++ b/meas/MeasUDF/test/CMakeLists.txt +@@ -1,5 +1,5 @@ + set (tests +- tmeas ++# tmeas # requires casacore-data + ) + + foreach (test ${tests}) +diff --git a/measures/Measures/test/CMakeLists.txt b/measures/Measures/test/CMakeLists.txt +index c10a670..261adb1 100644 +--- a/measures/Measures/test/CMakeLists.txt ++++ b/measures/Measures/test/CMakeLists.txt +@@ -1,25 +1,25 @@ + set (tests + dM1950_2000 +-dMeasure +-tEarthField +-tEarthMagneticMachine +-tMBaseline +-tMDirection +-tMEarthMagnetic +-tMFrequency +-tMeasComet +-tMeasIERS +-tMeasJPL ++# dMeasure # geodetic/TAI_UTC ++# tEarthField # geodetic/IGRF ++# tEarthMagneticMachine # geodetic/IGRF ++# tMBaseline # geodetic/IGRF ++# tMDirection ++# tMEarthMagnetic # geodetic/IGRF ++# tMFrequency ++# tMeasComet # ephemerides/VGEO ++# tMeasIERS # geodetic/IERS* ++# tMeasJPL # ephemerides/DE200 + tMeasMath +-tMeasure ++# tMeasure # geodetic/TAI_UTC + tMeasureHolder +-tMuvw +-tParAngleMachine +-tQuality ++# tMuvw # geodetic/TAI_UTC ++# tParAngleMachine # geodetic/TAI_UTC ++# tQuality + tRecordTransformable + tStokes + tUVWMachine +-tVelocityMachine ++# tVelocityMachine # geodetic/TAI_UTC + ) + + foreach (test ${tests}) +@@ -29,9 +29,4 @@ foreach (test ${tests}) + add_dependencies(check ${test}) + endforeach (test) + +-if (SOFA_FOUND) +- add_executable (tIAU2000 SofaTest.cc tIAU2000.cc) +- target_link_libraries (tIAU2000 casa_measures ${SOFA_LIBRARY}) +- add_test (tIAU2000 ${CMAKE_SOURCE_DIR}/cmake/cmake_assay ./tIAU2000) +- add_dependencies(check tIAU2000) +-endif (SOFA_FOUND) ++# tIAU2000 disabled for missing geodetic/TAI_UTC +diff --git a/measures/TableMeasures/test/CMakeLists.txt b/measures/TableMeasures/test/CMakeLists.txt +index e7c4af1..84e7d6d 100644 +--- a/measures/TableMeasures/test/CMakeLists.txt ++++ b/measures/TableMeasures/test/CMakeLists.txt +@@ -1,6 +1,6 @@ + set (tests + tTableQuantum +-tTableMeasures ++# tTableMeasures # geodetic/{IERSeop{2000,97},IERSpredict{,2000},TAI_UTC} + dVarRefMdirCol + ) + +diff --git a/ms/MSOper/test/CMakeLists.txt b/ms/MSOper/test/CMakeLists.txt +index e53aec3..81912cd 100644 +--- a/ms/MSOper/test/CMakeLists.txt ++++ b/ms/MSOper/test/CMakeLists.txt +@@ -1,9 +1,9 @@ + set (tests +-tMSDerivedValues +-tMSKeys ++# tMSDerivedValues # geodetic/IERSpredict ++# tMSKeys + tMSMetaData + tMSReader +-tMSSummary ++# tMSSummary + ) + + foreach (test ${tests}) +diff --git a/ms/MeasurementSets/test/CMakeLists.txt b/ms/MeasurementSets/test/CMakeLists.txt +index 6e66aad..8150ad4 100644 +--- a/ms/MeasurementSets/test/CMakeLists.txt ++++ b/ms/MeasurementSets/test/CMakeLists.txt +@@ -15,7 +15,7 @@ tMeasurementSet + tMSColumns + tMSDataDescBuffer + tMSFieldBuffer +-tMSFieldEphem ++#tMSFieldEphem requires casacore-data + tMSIter + tMSMainBuffer + tMSPolBuffer diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-do-not-install-test-and-demonstration-executables.patch b/sci-astronomy/casacore/files/casacore-2.3.0-do-not-install-test-and-demonstration-executables.patch new file mode 100644 index 000000000000..ab9004dc3ecf --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-do-not-install-test-and-demonstration-executables.patch @@ -0,0 +1,34 @@ +From: Benda Xu <heroxbd@gentoo.org> +Date: Fri, 24 Oct 2014 18:26:54 +0900 +Subject: Do not install test and demonstration executables + +casacore_{assay,floatcheck} are removed and only used with scons. +measuresdata.csh and ms2uvfits should be included in casacore-doc as examples. +change measuresdata.csh shebang to /usr/bin/tcsh as in Debian. +--- + measures/apps/CMakeLists.txt | 2 +- + msfits/apps/CMakeLists.txt | 5 ----- + 2 files changed, 1 insertion(+), 6 deletions(-) + delete mode 100644 msfits/apps/CMakeLists.txt + +diff --git a/measures/apps/CMakeLists.txt b/measures/apps/CMakeLists.txt +index fcf2184..1bbf19f 100644 +--- a/measures/apps/CMakeLists.txt ++++ b/measures/apps/CMakeLists.txt +@@ -7,4 +7,4 @@ endforeach(prog findmeastable) + add_executable (measuresdata measuresdata/measuresdata.cc) + target_link_libraries (measuresdata casa_measures ${CASACORE_ARCH_LIBS}) + install(TARGETS measuresdata DESTINATION bin) +-install(PROGRAMS measuresdata/measuresdata-update DESTINATION bin) ++install(PROGRAMS DESTINATION bin) +diff --git a/msfits/apps/CMakeLists.txt b/msfits/apps/CMakeLists.txt +deleted file mode 100644 +index d2775c8..0000000 +--- a/msfits/apps/CMakeLists.txt ++++ /dev/null +@@ -1,5 +0,0 @@ +-foreach(prog ms2uvfits) +- add_executable (${prog} ${prog}.cc) +- target_link_libraries (${prog} casa_msfits ${CASACORE_ARCH_LIBS}) +- install(TARGETS ${prog} DESTINATION bin) +-endforeach(prog ms2uvfits) diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-fix-FTBFS-tStatisticsUtilities-tLatticeStatistics-and-tLC.patch b/sci-astronomy/casacore/files/casacore-2.3.0-fix-FTBFS-tStatisticsUtilities-tLatticeStatistics-and-tLC.patch new file mode 100644 index 000000000000..2f07fe3bcf85 --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-fix-FTBFS-tStatisticsUtilities-tLatticeStatistics-and-tLC.patch @@ -0,0 +1,162 @@ +From: Edmund Grimley Evans <edmund.grimley.evans@gmail.com> +Date: Thu, 1 Jun 2017 22:34:46 +0100 +Subject: Fix FTBFS tStatisticsUtilities, + tLatticeStatistics and tLCEllipsoid on arm64 + +The tests "tStatisticsUtilities" and "tLatticeStatistics" can be made +to pass on arm64 with these adjustments to the expected accuracy. + +The test "tLCEllipsoid" seems to be converting ellipses into bitmaps. +I'm guessing it gives different output on amd64 and arm64 because the +real curve passes through a critical point and numerical inaccuracy +puts it on different sides of the point on the two architectures. One +way to fix that might be to use non-round numbers in the parameters so +that the curve does not pass through a critical point. That's what I +tried to do, and with the following changes to the program and the +expected output the test passes on both amd64 and arm64. +--- + lattices/LRegions/test/tLCEllipsoid.cc | 4 ++-- + lattices/LRegions/test/tLCEllipsoid.out | 24 ++++++++++++------------ + lattices/LatticeMath/test/tLatticeStatistics.cc | 4 ++-- + scimath/Mathematics/test/tStatisticsUtilities.cc | 2 +- + 4 files changed, 17 insertions(+), 17 deletions(-) + +diff --git a/lattices/LRegions/test/tLCEllipsoid.cc b/lattices/LRegions/test/tLCEllipsoid.cc +index 9e9ee03..2ff65fa 100644 +--- a/lattices/LRegions/test/tLCEllipsoid.cc ++++ b/lattices/LRegions/test/tLCEllipsoid.cc +@@ -212,8 +212,8 @@ int main() { + show(ellipse3); + + Float theta = C::pi/4; +- major = 36; +- minor = 16; ++ major = 36.01; ++ minor = 16.01; + xcenter = -1; + ycenter = -1; + LCEllipsoid ellipse4( +diff --git a/lattices/LRegions/test/tLCEllipsoid.out b/lattices/LRegions/test/tLCEllipsoid.out +index 3709155..17d8e87 100644 +--- a/lattices/LRegions/test/tLCEllipsoid.out ++++ b/lattices/LRegions/test/tLCEllipsoid.out +@@ -163,7 +163,7 @@ + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 29] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 28] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 27] +-0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 26] ++0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 26] + 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 [35, 25] + 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 [35, 24] + 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 [35, 23] +@@ -177,7 +177,7 @@ + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 [35, 15] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 [35, 14] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 [35, 13] +-1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 [35, 12] ++1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 [35, 12] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 [35, 11] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 [35, 10] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 [35, 9] +@@ -207,10 +207,10 @@ + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 22] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 21] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 20] +-0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 19] ++0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 [35, 19] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 [35, 18] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 [35, 17] +-0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 [35, 16] ++0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 [35, 16] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 [35, 15] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 [35, 14] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 [35, 13] +@@ -222,11 +222,11 @@ + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 7] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 6] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 5] +-0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 4] ++0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 4] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 3] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 2] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 1] +-0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 0] ++0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 0] + + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 35] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 34] +@@ -240,7 +240,7 @@ + 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 26] + 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 25] + 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 24] +-0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 23] ++0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 23] + 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 22] + 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 21] + 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [35, 20] +@@ -254,7 +254,7 @@ + 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 [35, 12] + 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 [35, 11] + 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 [35, 10] +-0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 9] ++0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 [35, 9] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 8] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 7] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 6] +@@ -265,11 +265,11 @@ + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 1] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 0] + +-1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 35] ++1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 35] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 34] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 33] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 32] +-1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 31] ++1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 31] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 30] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 29] + 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 28] +@@ -281,10 +281,10 @@ + 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 22] + 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 21] + 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 20] +-1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 19] ++1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 19] + 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 18] + 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 17] +-0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 16] ++1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 16] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 15] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 14] + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [35, 13] +diff --git a/lattices/LatticeMath/test/tLatticeStatistics.cc b/lattices/LatticeMath/test/tLatticeStatistics.cc +index 833af91..43e0ae7 100644 +--- a/lattices/LatticeMath/test/tLatticeStatistics.cc ++++ b/lattices/LatticeMath/test/tLatticeStatistics.cc +@@ -416,10 +416,10 @@ int main() + AlwaysAssert(sum(pos) == expSum, AipsError); + AlwaysAssert(npts(pos) == expNpts, AipsError); + AlwaysAssert(mean(pos) == expMean, AipsError); +- AlwaysAssert(near(sumsq(pos), expSumSq), AipsError); ++ AlwaysAssert(near(sumsq(pos), expSumSq, 1e-9), AipsError); + AlwaysAssert(near(var(pos), expVar, 1e-10), AipsError); + AlwaysAssert(near(sigma(pos), expSigma, 1e-11), AipsError); +- AlwaysAssert(near(rms(pos), expRMS), AipsError); ++ AlwaysAssert(near(rms(pos), expRMS, 1e-10), AipsError); + AlwaysAssert(mymin(pos) == DComplex(0, 0), AipsError); + AlwaysAssert(mymax(pos) == DComplex(size-1, size-1), AipsError); + +diff --git a/scimath/Mathematics/test/tStatisticsUtilities.cc b/scimath/Mathematics/test/tStatisticsUtilities.cc +index 46491c8..c6c443f 100644 +--- a/scimath/Mathematics/test/tStatisticsUtilities.cc ++++ b/scimath/Mathematics/test/tStatisticsUtilities.cc +@@ -265,7 +265,7 @@ int main() { + AlwaysAssert(got.rms == expec.rms, AipsError); + AlwaysAssert(near(got.stddev, expec.stddev), AipsError); + AlwaysAssert(near(got.sum, expec.sum), AipsError); +- AlwaysAssert(got.sumsq == expec.sumsq, AipsError); ++ AlwaysAssert(near(got.sumsq, expec.sumsq), AipsError); + AlwaysAssert(near(got.variance, expec.variance), AipsError); + AlwaysAssert(*got.max == *expec.max, AipsError); + AlwaysAssert(*got.min == *expec.min, AipsError); diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-fix-too-small-int-type-for-memory-on-32-bit-machines.patch b/sci-astronomy/casacore/files/casacore-2.3.0-fix-too-small-int-type-for-memory-on-32-bit-machines.patch new file mode 100644 index 000000000000..33723375e4dd --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-fix-too-small-int-type-for-memory-on-32-bit-machines.patch @@ -0,0 +1,77 @@ +From: Ole Streicher <olebole@debian.org> +Date: Fri, 2 Dec 2016 13:16:42 +0100 +Subject: Fix too small int type for memory on 32-bit machines + +See https://github.com/casacore/casacore/issues/542#issuecomment-264440161 +--- + casa/OS/HostInfoLinux.h | 22 +++++++++++----------- + 1 file changed, 11 insertions(+), 11 deletions(-) + +diff --git a/casa/OS/HostInfoLinux.h b/casa/OS/HostInfoLinux.h +index f792b71..4edf61d 100644 +--- a/casa/OS/HostInfoLinux.h ++++ b/casa/OS/HostInfoLinux.h +@@ -132,13 +132,13 @@ skip_token(const char *p) + // get integer value from v1 cgroup hierarchy of current processes, if + // sub_value is set it returns the entry of a collection identified by value, + // e.g. total_rss from memory.stat +-// returns std::numeric_limits<size_t>::max() on error ++// returns std::numeric_limits<uInt64>::max() on error + // note unset cgroup limits usually have intptr_t.max() + // does not support v2 cgroups +-static inline size_t ++static inline uInt64 + get_cgroup_limit(std::string group, std::string value, std::string sub_value="") + { +- size_t result = std::numeric_limits<size_t>::max(); ++ uInt64 result = std::numeric_limits<uInt64>::max(); + // assume common location, technically one needs to search for mounts + const std::string cgroup = std::string("/sys/fs/cgroup/") + group + "/"; + +@@ -280,12 +280,12 @@ void HostMachineInfo::update_info( ) + } + + /* can't use more memory than allowed by cgroups, enforced */ +- size_t proc_mem_max = get_cgroup_limit("memory", "memory.limit_in_bytes") / 1024; ++ uInt64 proc_mem_max = get_cgroup_limit("memory", "memory.limit_in_bytes") / 1024; + /* usage_in_bytes also includes cache so use memory.stat */ +- size_t proc_mem_used = get_cgroup_limit("memory", "memory.stat", "total_rss") / 1024; ++ uInt64 proc_mem_used = get_cgroup_limit("memory", "memory.stat", "total_rss") / 1024; + + /* set HostInfo memoryTotal() */ +- memory_total = std::min((size_t)sys_mem_total, proc_mem_max); ++ memory_total = std::min((uInt64)sys_mem_total, proc_mem_max); + + /* if we have a valid cgroup limit we can determine memoryFree() exactly */ + if (proc_mem_max <= sys_mem_total && proc_mem_used <= proc_mem_max) { +@@ -293,7 +293,7 @@ void HostMachineInfo::update_info( ) + } + else { + /* no cgroups so we have to assume all memory of host is available */ +- memory_free = std::min((size_t)sys_mem_avail, (size_t)memory_total); ++ memory_free = std::min((uInt64)sys_mem_avail, (uInt64)memory_total); + } + memory_used = memory_total - memory_free; + +@@ -303,17 +303,17 @@ void HostMachineInfo::update_info( ) + cerr << "Error parsing SwapTotal and SwapFree in /proc/meminfo\n"; + + /* can't use more swap than allowed by cgroups */ +- size_t proc_swap_max = get_cgroup_limit("memory", "memory.memsw.limit_in_bytes") / 1024; +- size_t proc_swap_used = get_cgroup_limit("memory", "memory.stat", "total_swap") / 1024; ++ uInt64 proc_swap_max = get_cgroup_limit("memory", "memory.memsw.limit_in_bytes") / 1024; ++ uInt64 proc_swap_used = get_cgroup_limit("memory", "memory.stat", "total_swap") / 1024; + /* limit is mem + swap */ + if (proc_mem_max <= sys_mem_total && proc_mem_max <= proc_swap_max) { + proc_swap_max = proc_swap_max - proc_mem_max; + } + + /* set swapTotal() */ +- swap_total = std::min((size_t)sys_swap_total, proc_swap_max); ++ swap_total = std::min((uInt64)sys_swap_total, proc_swap_max); + +- if (proc_swap_max <= (size_t)swap_total && proc_swap_used <= proc_swap_max) { ++ if (proc_swap_max <= (uInt64)swap_total && proc_swap_used <= proc_swap_max) { + swap_free = proc_swap_max - proc_swap_used; + } + else { diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-loose-some-tests-tFFTServer-tests.patch b/sci-astronomy/casacore/files/casacore-2.3.0-loose-some-tests-tFFTServer-tests.patch new file mode 100644 index 000000000000..bccffcd4b522 --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-loose-some-tests-tFFTServer-tests.patch @@ -0,0 +1,36 @@ +From: Ole Streicher <olebole@debian.org> +Date: Thu, 24 Nov 2016 14:31:06 +0100 +Subject: Loose some tests tFFTServer tests + +This shall help to compile for mips64el and hppa. +--- + scimath/Mathematics/test/tFFTServer.cc | 2 +- + scimath/Mathematics/test/tFFTServer2.cc | 2 +- + 2 files changed, 2 insertions(+), 2 deletions(-) + +diff --git a/scimath/Mathematics/test/tFFTServer.cc b/scimath/Mathematics/test/tFFTServer.cc +index c211f36..711e5a7 100644 +--- a/scimath/Mathematics/test/tFFTServer.cc ++++ b/scimath/Mathematics/test/tFFTServer.cc +@@ -1347,7 +1347,7 @@ public: + } + AlwaysTrue(result.shape().isEqual(expectedResult.shape()), + AipsError); +- AlwaysTrue(allNearAbs(result, expectedResult, epsilon), ++ AlwaysTrue(allNearAbs(result, expectedResult, 2*epsilon), + AipsError); + + int out_size = expectedResult.nelements(); +diff --git a/scimath/Mathematics/test/tFFTServer2.cc b/scimath/Mathematics/test/tFFTServer2.cc +index a663d50..880bce3 100644 +--- a/scimath/Mathematics/test/tFFTServer2.cc ++++ b/scimath/Mathematics/test/tFFTServer2.cc +@@ -1096,7 +1096,7 @@ int main() { + expectedResult(0) = Complex(5,0); + server.fft(result, input, True); + AlwaysAssert(near(result(0), Complex(5,0), FLT_EPSILON), AipsError); +- AlwaysAssert(!near(result(4).imag(), 0.0f, FLT_EPSILON), AipsError); ++ AlwaysAssert(!near(result(4).imag(), 0.0f, 2*FLT_EPSILON), AipsError); + server.fft(reverseTransform, result); + AlwaysAssert(allNearAbs(input, reverseTransform, FLT_EPSILON), + AipsError); diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-make-the-check-for-NFS-a-bit-more-portable-BSD.patch b/sci-astronomy/casacore/files/casacore-2.3.0-make-the-check-for-NFS-a-bit-more-portable-BSD.patch new file mode 100644 index 000000000000..2952f39c3623 --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-make-the-check-for-NFS-a-bit-more-portable-BSD.patch @@ -0,0 +1,60 @@ +From: Ole Streicher <olebole@debian.org> +Date: Thu, 24 Nov 2016 14:31:06 +0100 +Subject: Make the check for NFS a bit more portable (BSD) + +And provide a fallback (f.e. for HURD).However, there is probably no +real use case for that, since also other file systems may be slow or +lack certain features. +--- + casa/OS/Directory.cc | 21 +++++++++++++++------ + 1 file changed, 15 insertions(+), 6 deletions(-) + +diff --git a/casa/OS/Directory.cc b/casa/OS/Directory.cc +index 82e6efc..b79ce0f 100644 +--- a/casa/OS/Directory.cc ++++ b/casa/OS/Directory.cc +@@ -488,29 +488,38 @@ Vector<String> Directory::shellExpand (const Vector<String>& files, Bool stripPa + return expInNames; + } + +-#ifndef __APPLE__ ++#if defined(__linux__) + #include <sys/vfs.h> +-#include <linux//nfs_fs.h> +-#else ++#include <linux/nfs_fs.h> ++#elif defined( __APPLE__) + #include <sys/param.h> + #include <sys/mount.h> + #include <sys/vnode.h> ++#elif defined(__FreeBSD_kernel__) ++#include <sys/mount.h> ++#include <sys/param.h> ++#include <stdlib.h> + #endif + + Bool Directory::isNFSMounted() const + { ++#if defined(__linux__) || defined(__APPLE__) || defined(__FreeBSD_kernel__) + struct statfs buf; + if (statfs (itsFile.path().expandedName().chars(), &buf) < 0) { + throw (AipsError ("Directory::isNFSMounted error on " + + itsFile.path().expandedName() + + ": " + strerror(errno))); + } +-#ifndef __APPLE__ ++#endif ++#if defined(__linux__) + return buf.f_type == NFS_SUPER_MAGIC; +-#else ++#elif defined(__APPLE__) + return buf.f_type == VT_NFS; ++#elif defined(__FreeBSD_kernel__) ++ return strcmp (buf.f_fstypename, "nfs") == 0; ++#else ++ return False; + #endif +- + } + + } //# NAMESPACE CASACORE - END diff --git a/sci-astronomy/casacore/files/casacore-2.3.0-use-the-correct-symbol-to-detect-Linux-OS.patch b/sci-astronomy/casacore/files/casacore-2.3.0-use-the-correct-symbol-to-detect-Linux-OS.patch new file mode 100644 index 000000000000..86d501365ffb --- /dev/null +++ b/sci-astronomy/casacore/files/casacore-2.3.0-use-the-correct-symbol-to-detect-Linux-OS.patch @@ -0,0 +1,22 @@ +From: Ole Streicher <olebole@debian.org> +Date: Thu, 24 Nov 2016 14:31:06 +0100 +Subject: Use the correct symbol to detect Linux OS + +Otherwise the compilation fails on powerpc archs +--- + casa/aipsenv.h | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/casa/aipsenv.h b/casa/aipsenv.h +index 7e272f0..25912b8 100644 +--- a/casa/aipsenv.h ++++ b/casa/aipsenv.h +@@ -130,7 +130,7 @@ namespace casacore { //# NAMESPACE CASACORE - BEGIN + #if defined(AIPS_LINUX) + #undef AIPS_LINUX + #endif +-#if defined(__linux) ++#if defined(__linux__) + #define AIPS_LINUX + #endif + diff --git a/sci-astronomy/casacore/metadata.xml b/sci-astronomy/casacore/metadata.xml new file mode 100644 index 000000000000..67227b679918 --- /dev/null +++ b/sci-astronomy/casacore/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + A set of libraries for the the Common Astronomy Software + Applications for radioastronomy. This project contains C++ libraries + which were the code of the discontinued AIPS++ package. +</longdescription> + <upstream> + <remote-id type="github">casacore/casacore</remote-id> + </upstream> + <use> + <flag name="data">Installs measures and data (pulls <pkg>sci-astronomy/casa-data</pkg>)</flag> + <flag name="c++11">Build casacore using the C++11 standard</flag> + </use> +</pkgmetadata> diff --git a/sci-astronomy/cdsclient/Manifest b/sci-astronomy/cdsclient/Manifest new file mode 100644 index 000000000000..3bf973562456 --- /dev/null +++ b/sci-astronomy/cdsclient/Manifest @@ -0,0 +1,8 @@ +AUX cdsclient-makefile.patch 3036 SHA256 92ef17cdeda7f7107acde5b16bb5bf6c09dbd7ab3f6e91ce5e529088ed5ca39d SHA512 410538e4afc03fdb6f0f3e3bc929620a3ec15ea7694b95c1fffbba8a0c289393d1c6a33dde919c6831ddc8ebbb335a74d447e781efac80c507c050ad07fe86cd WHIRLPOOL 5cc660323c730951c8445db0990c6413badea6a5dffaf76a0d2b76f457107f635d73e5fb1a19afe0563c63a870bd4332efa0b373c22fa66f6e761a2683008825 +DIST cdsclient-3.81.tar.gz 122719 SHA256 d74dca1d450e2c8f187e3d7c4952ac480a8913da799f5522a42ea7d5075e339d SHA512 3fcf7a902dfddb3583ff34eedbcddd6a5641bf9c87d234159090378436ac370313ea311d3fee6e202ee84b3fe4065ef45a46a15b5d996e05afd1418e617c20ea WHIRLPOOL 350a5d3bff06fbe15105b9f60c4d8266dda15974b32f01b19ec8aca05fb1e830298dc9f885088f58d4ddf6685da84579db908a68f15fe7bb64165684a2d8cd58 +DIST cdsclient-3.84.tar.gz 119585 SHA256 09eb633011461b9261b923e1d0db69d3591d376b447f316eb1994aaea8919700 SHA512 2d7abf0079189b9dd19cb8919061445fd19ea9f7dfd54e8ceee26b743218cf62ab00eba0147abe82d9294223927f04b4cc3328620dfc9184a7049f8d515b29e4 WHIRLPOOL 9c0526e9549b750cf54b94d37e905cc54d24ce4a5fe6415e87d23c9489d6f47d91c6673d3fd31869b956f073133f9216a8ee07442c1ec5d5ec96ded94ef9eeeb +EBUILD cdsclient-3.8.1.ebuild 948 SHA256 ff37fd6f7598bfcb9b218e7cbb35ba1a38f6e11450b5367a04595f3df8cf952a SHA512 07f12a9a124c3431a90d5e3400f144176ed2c4664ebfd58c8686904006892e95680f618609cb91b06776efc92ae99fd48e98eea87b816348c598bf8f1367d880 WHIRLPOOL 05b148bd7bd6ead94b55d3985d5e6d17c6527808ac517db64c79cb0fd702b19a7a9ef82414d6ee4a33f813de0e16a74355843535866089202ee2c5f67ffa45ab +EBUILD cdsclient-3.8.4.ebuild 948 SHA256 c9f49424c4dd1be8cb50bb1cff4ba48b2bf36bc407c1c4025a2470aa0f1d9b96 SHA512 2b75245e0f73317684e96463f95d0a0cafaff982eb2043264768cad9946a81cf95ada9c8502d0becca8d6f2ff0993b8d774b03dfa5f5b2453e886dd1cb0254d9 WHIRLPOOL 0d5244fa5313b047310c991b8e8652f7a710adf003f187a34149e92464ddeba8c6626cca6921cff09720207003fffa9fffdb219d2183060e0e83bb3817d2db13 +MISC ChangeLog 2705 SHA256 c111caf075f0af3bb0b2685ad8f180487b3bbefb1dd1d34e10d400d271a3f24f SHA512 d7284678afc4110c302373f094c0341cb120448281241fefebc50a0cb57a1e7d9648c4e5a53750cc8d84e966973bf97d4a4bf43a264530f6559202b6479fe29e WHIRLPOOL 4e4b11e84a7b72cad11856f04d5c49076c11a86d5b166695f9e3ef8724e474259f2987965f7548a41dee9d19df7064b3730cacd595e125523cc9411375772a59 +MISC ChangeLog-2015 3162 SHA256 303c1ee6b798d614a3bcf9ce15b88b911548e5a58493da82ad9811b8a009e96d SHA512 e654456cd07e607466fef70cc57842d4c1209aec8bcfb5b91003b6f696486dc23e1472bffbc7eee2fc097671010b7002860c64713bf23854ebfc1e9ad07f7939 WHIRLPOOL df411d8dbc796f151413dfc1d15ac46a9febe7df42afe27734994f977e6457bbb725006ba2b2d255572249a8b382981f3526ec212f522c68bf96802dbd86a2f0 +MISC metadata.xml 572 SHA256 2653d8f876aa06de245a6ef460888e38f31ec1e1e37e907fd728eb6f366ab49c SHA512 b742174d0d6df7326c204a9eacf27ab6a4ba5ce5ac8926502c129b8f746b7b8f4665c1e88f1a3c7871a57cd2215f5c3b10a5b31e515537d3c2ce14b743319186 WHIRLPOOL bfe35c079d670924218ce85ea8949828a80c815895b2dad17b2043a0f034e1c8066ed70a97385c8ec3fafb8ff15b400cde72eaa11082809e1017fd73e78ee835 diff --git a/sci-astronomy/cdsclient/cdsclient-3.8.1.ebuild b/sci-astronomy/cdsclient/cdsclient-3.8.1.ebuild new file mode 100644 index 000000000000..4ca690324256 --- /dev/null +++ b/sci-astronomy/cdsclient/cdsclient-3.8.1.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils versionator + +# upstream versioning wrong: 3.71 is really 3.7.1 +MYP="${PN}-$(delete_version_separator 2)" + +DESCRIPTION="Collection of scripts to access the CDS databases" +HOMEPAGE="http://cdsweb.u-strasbg.fr/doc/cdsclient.html" +SRC_URI="ftp://cdsarc.u-strasbg.fr/pub/sw/${MYP}.tar.gz" + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RESTRICT="mirror bindist" +DEPEND="" +RDEPEND="app-shells/tcsh" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}/${PN}-makefile.patch" ) +src_prepare() { + default + # remove non standard "mantex" page + sed -e 's/aclient.tex//' -i configure || die +} + +src_install() { + local bindir="${EPREFIX}/usr/bin/${PN}" + emake DESTDIR="${D}" SHSDIR="${D}${bindir}" install + cat <<-EOF > 99${PN} + PATH=${bindir} + ROOTPATH=${bindir} + EOF + doenvd 99${PN} +} diff --git a/sci-astronomy/cdsclient/cdsclient-3.8.4.ebuild b/sci-astronomy/cdsclient/cdsclient-3.8.4.ebuild new file mode 100644 index 000000000000..868a8b7c0c88 --- /dev/null +++ b/sci-astronomy/cdsclient/cdsclient-3.8.4.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils versionator + +# upstream versioning wrong: 3.71 is really 3.7.1 +MYP="${PN}-$(delete_version_separator 2)" + +DESCRIPTION="Collection of scripts to access the CDS databases" +HOMEPAGE="http://cdsweb.u-strasbg.fr/doc/cdsclient.html" +SRC_URI="ftp://cdsarc.u-strasbg.fr/pub/sw/${MYP}.tar.gz" + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RESTRICT="mirror bindist" +DEPEND="" +RDEPEND="app-shells/tcsh" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}/${PN}-makefile.patch" ) +src_prepare() { + default + # remove non standard "mantex" page + sed -e 's/aclient.tex//' -i configure || die +} + +src_install() { + local bindir="${EPREFIX}/usr/bin/${PN}" + emake DESTDIR="${D}" SHSDIR="${D}${bindir}" install + cat <<-EOF > 99${PN} + PATH=${bindir} + ROOTPATH=${bindir} + EOF + doenvd 99${PN} +} diff --git a/sci-astronomy/cdsclient/files/cdsclient-makefile.patch b/sci-astronomy/cdsclient/files/cdsclient-makefile.patch new file mode 100644 index 000000000000..6d135a622056 --- /dev/null +++ b/sci-astronomy/cdsclient/files/cdsclient-makefile.patch @@ -0,0 +1,106 @@ +--- cdsclient-3.81/Makefile.in.orig 2016-02-26 17:33:14.217750589 +0000 ++++ cdsclient-3.81/Makefile.in 2016-02-26 17:38:22.463875411 +0000 +@@ -31,17 +31,17 @@ + ################################################################# + #PREFIX = /usr/local + #PREFIX = $(HOME) +-PREFIX = @prefix@ ++PREFIX = $(DESTDIR)@prefix@ + PACKAGE = cdsclient + VERSION = @version@ + DISTRIB = $(PACKAGE)-$(VERSION) + ################################################################# + + INCDIR = $(PREFIX)/include +-LIBDIR = $(PREFIX)/lib ++LIBDIR = $(DESTDIR)/@libdir@ + BINDIR = $(PREFIX)/bin + SHSDIR = $(PREFIX)/bin +-MANDIR = $(PREFIX)/man ++MANDIR = $(PREFIX)/share/man + ########### + # NOTE: The definition below is required only on SOLARIS + # Comment the following line if required +@@ -57,12 +57,13 @@ + COPY = cp -p + RM = rm + AWK = @AWK@ ++MKDIR = mkdir -p + + # C options -------------------------------- + DEBUG = + C_OPT = -O + SYS = +-CFLAGS = $(C_OPT) $(DEBUG) $(SYS) -I. ++ + + # FILES -------------------------------- + VERFILE = $(PREFIX)/versions +@@ -102,7 +103,7 @@ + # RULES -------------------------------- + .SUFFIXES: .o .c + .c.o: +- $(CC) $(CFLAGS) -c $< ++ $(CC) $(CFLAGS) -I. -c $< + + # DEPENDENCIES -------------------------------- + +@@ -121,41 +122,39 @@ + # rm -f $$f; ln finducac2 $$f; done + + aclient: aclient.o $(OBJ) +- $(CC) $@.o $(OBJ) $(LIBSYS) -o $@ +- $(STRIP) $@ ++ $(CC) $(LDFLAGS) $@.o $(OBJ) $(LIBSYS) -o $@ + + wwwget: wwwget.c +- $(CC) wwwget.c $(LIBSYS) -o $@ +- $(STRIP) $@ ++ $(CC) $(CFLAGS) $(LDFLAGS) wwwget.c $(LIBSYS) -o $@ + + doc: sk.tex man.tex aclient.tex + latex man.tex + +-install: $(EXPORT_INSTALL) install_shs install_info ++install: $(EXPORT_INSTALL) install_shs + rm -rf *.cache + + export_install: install_bin install_man + + install_man: $(MAN) + if [ -d $(MANDIR) ]; then echo $(MANDIR) exists; \ +- else mkdir $(MANDIR); fi ++ else $(MKDIR) $(MANDIR); fi + for f in $(MAN); do \ + e=`echo $$f | cut -d. -f2`; \ + if [ -d $(MANDIR)/man$$e ] ; then echo $(MANDIR)/man$$e exists ; \ +- else mkdir $(MANDIR)/man$$e ; fi ; \ ++ else $(MKDIR) $(MANDIR)/man$$e ; fi ; \ + $(COPY) $$f $(MANDIR)/man$$e ; \ + done + + install_h: $(INC) +- test -d $(INCDIR) || mkdir $(INCDIR) ++ test -d $(INCDIR) || $(MKDIR) $(INCDIR) + $(COPY) $(INC) $(INCDIR) + + install_bin: $(BIN) +- test -d $(BINDIR) || mkdir $(BINDIR) ++ test -d $(BINDIR) || $(MKDIR) $(BINDIR) + $(COPY) $(BIN) $(BINDIR) + + install_shs: Makefile +- test -d $(SHSDIR) || mkdir $(SHSDIR) ++ test -d $(SHSDIR) || $(MKDIR) $(SHSDIR) + ractools=""; test -r $(RACatCDS) && ractools=$(RACatCDS)/*; \ + test -z "$$ractools" || ls -l $$ractools; \ + cdsutil="$(SHSatCDS)"; test -z "$(atCDS)" && cdsutil=""; \ +@@ -195,7 +194,7 @@ + $(MAKE) clean + -test -d /tmp/$(DISTRIB) && rm -rf /tmp/$(DISTRIB) + autoconf +- mkdir /tmp/$(DISTRIB) ++ $(MKDIR) /tmp/$(DISTRIB) + cp -p COPYRIGHT /ftp/pub/sw/COPYING /tmp/$(DISTRIB) + for f in $(SHS) Makefile.in configure; do cp -p $$f /tmp/$(DISTRIB); \ + add_license $$f > /tmp/$(DISTRIB)/$$f; done diff --git a/sci-astronomy/cdsclient/metadata.xml b/sci-astronomy/cdsclient/metadata.xml new file mode 100644 index 000000000000..557836e3fc90 --- /dev/null +++ b/sci-astronomy/cdsclient/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + The cdsclient package is a set of C and csh routines which can be + built on Unix stations or PCs running Linux, which once compiled allow + to query some databases located at Centre de Donnees astronomiques + de Strasbourg (CDS) or on mirrors over the network. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/celestia/Manifest b/sci-astronomy/celestia/Manifest new file mode 100644 index 000000000000..4bc5bfc38eb8 --- /dev/null +++ b/sci-astronomy/celestia/Manifest @@ -0,0 +1,12 @@ +AUX celestia-1.5.0-desktop.patch 1594 SHA256 2f989391f775e3435f0e0e570f747e0d8f38b310ea8ad92ba75099c59203171d SHA512 a6f5e296ec66a00182b77311a696ea787876e113260df7d7ad1ee4e27bf6e97264808efd3b760d226f85e9bdbf2832087afb69342d043e4c0059ccecde0384c4 WHIRLPOOL c28a1dcd4c7fa688bf2d4960734c3895b70a6fc4d55878c4615d0f7d0453dd4fb7b9419f9c8f8ae3928769c71676ffdf874f2cec46f1c640fe71d2db6b6860cf +AUX celestia-1.6.0-cfg.patch 461 SHA256 868bbbcd761ec9b2ce3e45e3688b0a6d8d2c0d4ea39b520e13271b0063c78dac SHA512 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f222c4e816f2684d8d8de5d456e81b6f6a9b92f3d3996137ddd371a9934793beeda6d1611e8f510f35eafdbe83837007fbae897efcebd47a6bf00e8b3ae159f9 WHIRLPOOL c8e842ab4d9f76f049f63e656caeec159713fd17d875cc6eaae4257ce3876285efcef1c8c21d84a1d87cef211b892160ae75e9b374b73476db3cefe6eff3ed52 diff --git a/sci-astronomy/celestia/celestia-1.6.1-r1.ebuild b/sci-astronomy/celestia/celestia-1.6.1-r1.ebuild new file mode 100644 index 000000000000..99276ceb7056 --- /dev/null +++ b/sci-astronomy/celestia/celestia-1.6.1-r1.ebuild @@ -0,0 +1,120 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 +WANT_AUTOMAKE="1.11" + +inherit eutils flag-o-matic gnome2 autotools + +DESCRIPTION="OpenGL 3D space simulator" +HOMEPAGE="http://www.shatters.net/celestia/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 ppc ppc64 x86 ~amd64-linux ~x86-linux" +IUSE="cairo gnome gtk nls pch theora threads" + +RDEPEND=" + virtual/opengl + virtual/jpeg:0 + media-libs/libpng:0= + <dev-lang/lua-5.2:* + gtk? ( !gnome? ( x11-libs/gtk+:2 >=x11-libs/gtkglext-1.0 ) ) + gnome? ( + x11-libs/gtk+:2 + >=x11-libs/gtkglext-1.0 + >=gnome-base/libgnomeui-2.0 + ) + !gtk? ( !gnome? ( media-libs/freeglut ) ) + cairo? ( x11-libs/cairo ) + theora? ( media-libs/libtheora )" + +DEPEND="${RDEPEND} + virtual/pkgconfig" + +pkg_setup() { + # Check for one for the following use flags to be set. + if use gnome; then + einfo "USE=\"gnome\" detected." + USE_DESTDIR="1" + CELESTIA_GUI="gnome" + elif use gtk; then + einfo "USE=\"gtk\" detected." + CELESTIA_GUI="gtk" + else + ewarn "If you want to use the full gui, set USE=\"{gnome|gtk}\"" + ewarn "Defaulting to glut support (no GUI)." + CELESTIA_GUI="glut" + fi +} + +src_prepare() { + # make better desktop files + epatch "${FILESDIR}"/${PN}-1.5.0-desktop.patch + # add a ~/.celestia for extra directories + epatch "${FILESDIR}"/${PN}-1.6.0-cfg.patch + # fix missing includes for gcc-4.6 + epatch "${FILESDIR}"/${P}-gcc46.patch + # missing zlib.h include with libpng15 + epatch "${FILESDIR}"/${P}-libpng15.patch \ + "${FILESDIR}"/${P}-linking.patch + + # gcc-47, #414015 + epatch "${FILESDIR}"/${P}-gcc47.patch + + # libpng16 #464764 + epatch "${FILESDIR}"/${P}-libpng16.patch + + # remove flags to let the user decide + local + for cf in -O2 -ffast-math \ + -fexpensive-optimizations \ + -fomit-frame-pointer; do + sed -i \ + -e "s/${cf}//g" \ + configure.in admin/* || die "sed failed" + done + # remove an unused gconf macro killing autoconf when no gnome + # (not needed without eautoreconf) + if ! use gnome; then + sed -i \ + -e '/AM_GCONF_SOURCE_2/d' \ + configure.in || die "sed failed" + fi + eautoreconf + filter-flags "-funroll-loops -frerun-loop-opt" + + ### This version of Celestia has a bug in the font rendering and + ### requires -fsigned-char. We should be able to force this flag + ### on all architectures. See bug #316573. + append-flags "-fsigned-char" +} + +src_configure() { + # force lua in 1.6.1. seems to be inevitable + econf \ + --disable-rpath \ + --with-${CELESTIA_GUI} \ + --with-lua \ + $(use_enable cairo) \ + $(use_enable threads threading) \ + $(use_enable nls) \ + $(use_enable pch) \ + $(use_enable theora) +} + +src_install() { + if [[ ${CELESTIA_GUI} == gnome ]]; then + gnome2_src_install + else + emake DESTDIR="${D}" install + local size + for size in 16 22 32 48 ; do + insinto /usr/share/icons/hicolor/${size}x${size}/apps + newins "${S}"/src/celestia/kde/data/hi${size}-app-${PN}.png ${PN}.png + done + fi + [[ ${CELESTIA_GUI} == glut ]] && domenu celestia.desktop + dodoc AUTHORS README TRANSLATORS *.txt +} diff --git a/sci-astronomy/celestia/files/celestia-1.5.0-desktop.patch b/sci-astronomy/celestia/files/celestia-1.5.0-desktop.patch new file mode 100644 index 000000000000..3e87692cc768 --- /dev/null +++ b/sci-astronomy/celestia/files/celestia-1.5.0-desktop.patch @@ -0,0 +1,55 @@ +--- src/celestia/kde/data/celestia.desktop.orig 2008-02-27 15:19:41.000000000 +0000 ++++ src/celestia/kde/data/celestia.desktop 2008-02-27 15:43:20.000000000 +0000 +@@ -1,8 +1,12 @@ + [Desktop Entry] ++Encoding=UTF-8 ++Version=1.0 + Name=Celestia +-Comment=Celestia ++Comment=3D space simulator to explore the universe + Exec=celestia %f + Terminal=false + Icon=celestia.png + MimeType=application/x-celestia-script + Type=Application ++Categories=Education;Science;Astronomy;Qt ++GenericName=Space Simulator +--- src/celestia/gtk/data/celestia.desktop.orig 2008-02-27 15:19:58.000000000 +0000 ++++ src/celestia/gtk/data/celestia.desktop 2008-02-27 15:44:26.000000000 +0000 +@@ -1,12 +1,12 @@ + [Desktop Entry] + Encoding=UTF-8 +-Version=1.4.0 +-Type=Application +-Exec=celestia +-Icon=celestia +-X-GNOME-DocPath= +-Terminal=false ++Version=1.0 + Name=Celestia +-Comment=Space Simulator +-StartupNotify=true +-Categories=Astronomy;Science;Application; ++Comment=3D space simulator to explore the universe ++Exec=celestia %f ++Terminal=false ++Icon=celestia.png ++MimeType=application/x-celestia-script ++Type=Application ++Categories=Education;Science;Astronomy;GTK ++GenericName=Space Simulator +--- celestia.desktop 1970-01-01 01:00:00.000000000 +0100 ++++ celestia.desktop 2008-02-27 15:22:31.000000000 +0000 +@@ -0,0 +1,12 @@ ++[Desktop Entry] ++Encoding=UTF-8 ++Version=1.0 ++Name=Celestia ++GenericName=Space Simulator ++Comment=Explore the Universe in this detailed space simulation ++Type=Application ++Categories=Education;Science;Astronomy ++Exec=celestia %f ++Terminal=false ++Icon=celestia.png ++MimeType=application/x-celestia-script diff --git a/sci-astronomy/celestia/files/celestia-1.6.0-cfg.patch b/sci-astronomy/celestia/files/celestia-1.6.0-cfg.patch new file mode 100644 index 000000000000..8a4c18143a95 --- /dev/null +++ b/sci-astronomy/celestia/files/celestia-1.6.0-cfg.patch @@ -0,0 +1,11 @@ +--- celestia.cfg.orig 2009-07-20 12:52:17.000000000 +0200 ++++ celestia.cfg 2009-07-20 12:52:43.000000000 +0200 +@@ -195,7 +195,7 @@ + # or + # ExtrasDirectories [ "D:\\celestia-extras" ] + #------------------------------------------------------------------------ +- ExtrasDirectories [ "extras-standard" "extras" ] ++ ExtrasDirectories [ "extras-standard" "extras" "~/.celestia" ] + + + #------------------------------------------------------------------------ diff --git a/sci-astronomy/celestia/files/celestia-1.6.1-gcc46.patch b/sci-astronomy/celestia/files/celestia-1.6.1-gcc46.patch new file mode 100644 index 000000000000..96967e36f9dc --- /dev/null +++ b/sci-astronomy/celestia/files/celestia-1.6.1-gcc46.patch @@ -0,0 +1,14 @@ +http://bugs.gentoo.org/show_bug.cgi?id=366073 +http://celestia.svn.sourceforge.net/viewvc/celestia?view=revision&revision=5178 + +Patch written by Nils Larsson <ni1s@nerdshack.com> +--- src/celengine/frametree.h ++++ src/celengine/frametree.h +@@ -14,6 +14,7 @@ + #define _CELENGINE_FRAMETREE_H_ + + #include <vector> ++#include <cstddef> + + class Star; + class Body; diff --git a/sci-astronomy/celestia/files/celestia-1.6.1-gcc47.patch b/sci-astronomy/celestia/files/celestia-1.6.1-gcc47.patch new file mode 100644 index 000000000000..385f39a20511 --- /dev/null +++ b/sci-astronomy/celestia/files/celestia-1.6.1-gcc47.patch @@ -0,0 +1,22 @@ +diff -up celestia-1.6.1/src/celengine/frametree.h.gcc47 celestia-1.6.1/src/celengine/frametree.h +--- celestia-1.6.1/src/celengine/frametree.h.gcc47 2012-03-22 12:56:56.096087430 -0400 ++++ celestia-1.6.1/src/celengine/frametree.h 2012-03-22 12:57:04.333022427 -0400 +@@ -13,6 +13,7 @@ + #ifndef _CELENGINE_FRAMETREE_H_ + #define _CELENGINE_FRAMETREE_H_ + ++#include <unistd.h> + #include <vector> + + class Star; +diff -up celestia-1.6.1/src/celengine/planetgrid.cpp.gcc47 celestia-1.6.1/src/celengine/planetgrid.cpp +--- celestia-1.6.1/src/celengine/planetgrid.cpp.gcc47 2012-03-22 12:53:01.496950513 -0400 ++++ celestia-1.6.1/src/celengine/planetgrid.cpp 2012-03-22 12:53:08.812891865 -0400 +@@ -12,6 +12,7 @@ + + #include <cstdio> + #include <cmath> ++#include <celmath/mathlib.h> + #include <celmath/intersect.h> + #include "planetgrid.h" + #include "body.h" diff --git a/sci-astronomy/celestia/files/celestia-1.6.1-libpng15.patch b/sci-astronomy/celestia/files/celestia-1.6.1-libpng15.patch new file mode 100644 index 000000000000..5dffbab246ef --- /dev/null +++ b/sci-astronomy/celestia/files/celestia-1.6.1-libpng15.patch @@ -0,0 +1,14 @@ +imagecapture.cpp:184:40: error: ‘Z_BEST_COMPRESSION’ was not declared in this scope + +--- src/celestia/imagecapture.cpp ++++ src/celestia/imagecapture.cpp +@@ -31,6 +31,9 @@ + #include "png.h" + #endif + ++// Z_BEST_COMPRESSION ++#include <zlib.h> ++ + // Define png_jmpbuf() in case we are using a pre-1.0.6 version of libpng + #ifndef png_jmpbuf + #define png_jmpbuf(png_ptr) png_ptr->jmpbuf diff --git a/sci-astronomy/celestia/files/celestia-1.6.1-libpng16.patch b/sci-astronomy/celestia/files/celestia-1.6.1-libpng16.patch new file mode 100644 index 000000000000..78911cb55755 --- /dev/null +++ b/sci-astronomy/celestia/files/celestia-1.6.1-libpng16.patch @@ -0,0 +1,25 @@ +image.cpp:530:61: error: ‘memcpy’ was not declared in this scope + +https://bugs.gentoo.org/show_bug.cgi?id=464764 + +Patch written by Lars Wendler <polynomial-c@gentoo.org> +--- a/celestia/src/celengine/image.cpp ++++ b/celestia/src/celengine/image.cpp +@@ -42,6 +42,7 @@ extern "C" { + #include "jpeglib.h" + #else + #include <cstdio> ++#include <string.h> + #include <jpeglib.h> + #endif + } +--- a/celestia/src/celengine/texture.cpp ++++ b/celestia/src/celengine/texture.cpp +@@ -28,6 +28,7 @@ + #include <cstdlib> + #include <cstdio> + #include <cassert> ++#include <string.h> + + #ifndef _WIN32 + #ifndef TARGET_OS_MAC diff --git a/sci-astronomy/celestia/files/celestia-1.6.1-linking.patch b/sci-astronomy/celestia/files/celestia-1.6.1-linking.patch new file mode 100644 index 000000000000..dd5f93e609a6 --- /dev/null +++ b/sci-astronomy/celestia/files/celestia-1.6.1-linking.patch @@ -0,0 +1,65 @@ +Fix linking issues: + * underlinking GLUT (bug #372123, #387609) + * as-needed (bug #281258) + * theora with glut (bug #399237) + +--- a/src/celestia/Makefile.am ++++ b/src/celestia/Makefile.am +@@ -7,14 +7,15 @@ + + if ENABLE_KDE + SUBDIRS += kde +-celestiaKDELIBS = $(LIB_QT) $(LIB_KDECORE) $(LIB_KDEUI) $(LIB_KFILE) \ +- $(LIBSOCKET) -lDCOP kde/libkdegui.a ++celestiaKDELIBS = kde/libkdegui.a + celestia_LDFLAGS = $(all_libraries) $(KDE_RPATH) ++LIBS += $(LIB_QT) $(LIB_KDECORE) $(LIB_KDEUI) $(LIB_KFILE) $(LIBSOCKET) -lDCOP + endif + + if ENABLE_GTK + SUBDIRS += gtk +-celestiaGTKLIBS = $(GTK_LIBS) gtk/libgtkgui.a ++celestiaGTKLIBS = gtk/libgtkgui.a ++LIBS += $(GTK_LIBS) + endif + + COMMONSOURCES = \ +@@ -62,6 +63,7 @@ + + if ENABLE_GLUT + GLUTSOURCES = glutmain.cpp ++GLUTLIBS = -lGL + endif + + if ENABLE_THEORA +@@ -80,15 +82,16 @@ + celestia_LDADD = \ + $(celestiaKDELIBS) \ + $(celestiaGTKLIBS) \ +- $(DL_LIBS) \ +- $(LUA_LIBS) \ +- $(THEORA_LIBS) \ + ../celengine/libcelengine.a \ + ../celtxf/libceltxf.a \ + ../cel3ds/libcel3ds.a \ + ../celmath/libcelmath.a \ + ../celutil/libcelutil.a \ +- $(SPICE_LIBS) ++ $(LUA_LIBS) \ ++ $(THEORA_LIBS) \ ++ $(GLUTLIBS) \ ++ $(SPICE_LIBS) \ ++ $(DL_LIBS) + + noinst_HEADERS = $(wildcard *.h) + noinst_DATA = ../../celestia +--- a/configure.in ++++ b/configure.in +@@ -252,6 +252,7 @@ + dnl Check for GLUT. + AC_CHECK_LIB(glut, glutKeyboardUpFunc, , + [AC_MSG_ERROR([GLUT library version >= 3.7 not found])]) ++ check_theora="yes" + fi + AM_CONDITIONAL(ENABLE_GLUT, test "$ui_glut" = "yes") + diff --git a/sci-astronomy/celestia/metadata.xml b/sci-astronomy/celestia/metadata.xml new file mode 100644 index 000000000000..d9b06cd8c2cc --- /dev/null +++ b/sci-astronomy/celestia/metadata.xml @@ -0,0 +1,21 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + Celestia is a real-time space simulation that lets you experience + our universe in three dimensions. You can travel throughout the solar + system, to any of over 100,000 stars, or beyond the galaxy. All + travel in Celestia is seamless; the exponential zoom feature lets you + explore space across a range of scales, from galaxy clusters down + to spacecraft a few meters across. A 'point-and-goto' interface + is used to navigate through the universe to the object you + want to visit. +</longdescription> + <upstream> + <remote-id type="sourceforge">celestia</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/cpl/Manifest b/sci-astronomy/cpl/Manifest new file mode 100644 index 000000000000..3141cb06a787 --- /dev/null +++ b/sci-astronomy/cpl/Manifest @@ -0,0 +1,12 @@ +AUX cpl-6.1.1-check-shared-libs.patch 1010 SHA256 99d448ed80ad6139bb989ffc718942570dc8c2646e3936939c9fb6797deb92a5 SHA512 40d060e441222328e92508eef25fa50eea37600d4bfb9f422d47e5cafac115a9e82994ff74e3ca17124b5b83d8cec19b2f681709dbfc1ec975841a74fd273903 WHIRLPOOL 23fc6e83b59e6c10e512d93bde8ff2d62c5bc4a1b3390dea163e6c94f03bc2eb21fe3db12a61d3d869d71f59493f77ff6fdcab416ff564542d436b7850e9a7ad +AUX cpl-6.1.1-use-system-ltdl.patch 1296 SHA256 55bd2aa8072e621d6a7e4e939f8e6831c598c7000f739756520ff174e1d6ecaf SHA512 bfa2d0f6cadcf7e817314a6a3d587f99b298ea7f1fd919f5c7ef6a4a133a631da7a039f77f572918029ee8284d025a808ff3851112e5836ab824afa5e519ac1e WHIRLPOOL a1ee4c34fde903f14f6805cb312951ead0fa3b1bfaf9b78abbad4e4063d2f15def568b24401695ceeb0613fce933f5fba7cb239d6933b4d5cfeb262fd0a5b1a0 +AUX cpl-6.6.1-use-system-ltdl.patch 1005 SHA256 d63c740458b845a5d580f2503626cb85f772885f971cf6deafa3b538e786d61b SHA512 bd3c517245f8d2fb29cc68bcc1f4bad3d0fd5d8c2b3673b0ddbcec5b12b171527109ba3ad2bb2961d37c921ddb11876d49e698199c7360ad907c0ed28245404a WHIRLPOOL 105859ba956394e3eed4ca797e322b06ad2fe46fba575d75623ef295257b1bb1fa99469ceef0f865fd2a37d5e385599f8071c7237d6a42e4e0ae869525dc52e2 +DIST cpl-6.4.2.tar.gz 3165143 SHA256 848dbbc581670b32eeb3d87a7c3c10c9d3969f0fcbe7daf8ba18ef0081cbc793 SHA512 636ce549f23862a111fd88e97878eff8b86c88e8e2e800533b2f34f219f6b6ea3f03bd9de6ce9606c3787d0a61fb66a6bd92087d24c57c47e5a26e31eb362a11 WHIRLPOOL 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5c4f45f0c1ee32b01b5f04ec5cd7ae1721f9dc21e9b9027a5001f0f034a04efed71dbf4a3f30a1b6070f45c9b0f08f71926f63aaf3ce4c38c9b2a53fb50b9278 WHIRLPOOL 3506df619f59fd33d6df5451254b50eb133e652353bb2f06cff3a70a153759e4af3c4eb624cff4628e20cfff98ce1fb1e0e1c47f102dc313bc9e382115ee44fc diff --git a/sci-astronomy/cpl/cpl-6.4.2.ebuild b/sci-astronomy/cpl/cpl-6.4.2.ebuild new file mode 100644 index 000000000000..aba6a36645b2 --- /dev/null +++ b/sci-astronomy/cpl/cpl-6.4.2.ebuild @@ -0,0 +1,73 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +JAVA_PKG_OPT_USE=gasgano +AUTOTOOLS_AUTORECONF=1 + +inherit eutils java-pkg-opt-2 autotools-utils + +DESCRIPTION="ESO common pipeline library for astronomical data reduction" +HOMEPAGE="http://www.eso.org/sci/software/cpl/" +SRC_URI="ftp://ftp.eso.org/pub/dfs/pipelines/libraries/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0/20" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc gasgano static-libs threads" + +RDEPEND=" + sci-astronomy/wcslib:0= + >=sci-libs/cfitsio-3.310:0= + sci-libs/fftw:3.0= + gasgano? ( sci-astronomy/gasgano )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen )" + +PATCHES=( + "${FILESDIR}"/${PN}-6.1.1-check-shared-libs.patch + "${FILESDIR}"/${PN}-6.1.1-use-system-ltdl.patch +) + +src_prepare() { + # bug 422455 and remove cpu chcking + sed -i \ + -e '/AM_C_PROTOTYPES/d' \ + -e '/CPL_CHECK_CPU/d' \ + configure.ac libcext/configure.ac || die + autotools-utils_src_prepare +} + +src_configure() { + local myeconfargs=( + --htmldir="${EPREFIX}/usr/share/doc/${PF}/html" + --disable-ltdl-install + --without-included-ltdl + --with-cfitsio="${EPREFIX}/usr" + --with-wcs="${EPREFIX}/usr" + --with-fftw="${EPREFIX}/usr" + $(use_enable doc maintainer-mode) + $(use_enable threads) + ) + if use gasgano; then + myeconfargs+=( + --enable-gasgano + --with-gasgano="${EPREFIX}/usr" + --with-gasgano-classpath="${EPREFIX}/usr/share/gasgano/lib" + --with-java="$(java-config -O)" + ) + else + myeconfargs+=( --disable-gasgano ) + fi + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile all $(use doc && echo html) +} + +src_install() { + autotools-utils_src_install all $(use doc && echo install-html) +} diff --git a/sci-astronomy/cpl/cpl-6.6.1.ebuild b/sci-astronomy/cpl/cpl-6.6.1.ebuild new file mode 100644 index 000000000000..a2d5fdfc6e72 --- /dev/null +++ b/sci-astronomy/cpl/cpl-6.6.1.ebuild @@ -0,0 +1,77 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +JAVA_PKG_OPT_USE=gasgano + +inherit autotools java-pkg-opt-2 + +DESCRIPTION="ESO common pipeline library for astronomical data reduction" +HOMEPAGE="http://www.eso.org/sci/software/cpl/" +SRC_URI="ftp://ftp.eso.org/pub/dfs/pipelines/libraries/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0/20" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc gasgano static-libs threads" + +RDEPEND=" + sci-astronomy/wcslib:0= + sci-libs/cfitsio:0= + sci-libs/fftw:3.0= + gasgano? ( sci-astronomy/gasgano )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen )" + +PATCHES=( + "${FILESDIR}"/${PN}-6.6.1-use-system-ltdl.patch +) + +src_prepare() { + default + # remove cpu chcking + sed -e '/CPL_CHECK_CPU/d' \ + -i configure.ac libcext/configure.ac || die + # search for shared libs, not static + sed -e 's/\.a/\.so/g' \ + -i m4/cpl.m4 || die + eautoreconf +} + +src_configure() { + local myeconfargs=( + --htmldir="${EPREFIX}/usr/share/doc/${PF}/html" + --disable-ltdl-install + --without-included-ltdl + --with-cfitsio="${EPREFIX}/usr" + --with-wcs="${EPREFIX}/usr" + --with-fftw="${EPREFIX}/usr" + $(use_enable doc maintainer-mode) + $(use_enable static-libs static) + $(use_enable threads) + ) + if use gasgano; then + myeconfargs+=( + --enable-gasgano + --with-gasgano="${EPREFIX}/usr" + --with-gasgano-classpath="${EPREFIX}/usr/share/gasgano/lib" + --with-java="$(java-config -O)" + ) + else + myeconfargs+=( --disable-gasgano ) + fi + econf ${myeconfargs[@]} +} + +src_compile() { + default + use doc && emake html +} + +src_install() { + default + prune_libtool_files --all + use doc && emake install-html +} diff --git a/sci-astronomy/cpl/cpl-7.0.ebuild b/sci-astronomy/cpl/cpl-7.0.ebuild new file mode 100644 index 000000000000..6a7182c47d26 --- /dev/null +++ b/sci-astronomy/cpl/cpl-7.0.ebuild @@ -0,0 +1,77 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +JAVA_PKG_OPT_USE=gasgano + +inherit autotools java-pkg-opt-2 + +DESCRIPTION="ESO common pipeline library for astronomical data reduction" +HOMEPAGE="http://www.eso.org/sci/software/cpl/" +SRC_URI="ftp://ftp.eso.org/pub/dfs/pipelines/libraries/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0/26" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc gasgano static-libs threads" + +RDEPEND=" + sci-astronomy/wcslib:0= + sci-libs/cfitsio:0= + sci-libs/fftw:3.0= + gasgano? ( sci-astronomy/gasgano )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen )" + +PATCHES=( + "${FILESDIR}"/${PN}-6.6.1-use-system-ltdl.patch +) + +src_prepare() { + default + # remove cpu chcking + sed -e '/CPL_CHECK_CPU/d' \ + -i configure.ac libcext/configure.ac || die + # search for shared libs, not static + sed -e 's/\.a/\.so/g' \ + -i m4/cpl.m4 || die + eautoreconf +} + +src_configure() { + local myeconfargs=( + --htmldir="${EPREFIX}/usr/share/doc/${PF}/html" + --disable-ltdl-install + --without-included-ltdl + --with-cfitsio="${EPREFIX}/usr" + --with-wcs="${EPREFIX}/usr" + --with-fftw="${EPREFIX}/usr" + $(use_enable doc maintainer-mode) + $(use_enable static-libs static) + $(use_enable threads) + ) + if use gasgano; then + myeconfargs+=( + --enable-gasgano + --with-gasgano="${EPREFIX}/usr" + --with-gasgano-classpath="${EPREFIX}/usr/share/gasgano/lib" + --with-java="$(java-config -O)" + ) + else + myeconfargs+=( --disable-gasgano ) + fi + econf ${myeconfargs[@]} +} + +src_compile() { + default + use doc && emake html +} + +src_install() { + default + prune_libtool_files --all + use doc && emake install-html +} diff --git a/sci-astronomy/cpl/files/cpl-6.1.1-check-shared-libs.patch b/sci-astronomy/cpl/files/cpl-6.1.1-check-shared-libs.patch new file mode 100644 index 000000000000..658f2eaefb9e --- /dev/null +++ b/sci-astronomy/cpl/files/cpl-6.1.1-check-shared-libs.patch @@ -0,0 +1,35 @@ +Check shared library instead of static ones. +bicatali@gentoo.org + +diff -Nur cpl-6.1.1.orig/m4/cpl.m4 cpl-6.1.1/m4/cpl.m4 +--- cpl-6.1.1.orig/m4/cpl.m4 2012-06-04 18:38:01.000000000 +0100 ++++ cpl-6.1.1/m4/cpl.m4 2012-06-04 18:46:37.000000000 +0100 +@@ -8,7 +8,7 @@ + + cpl_cfitsio_check_version="$1" + cpl_cfitsio_check_header="fitsio.h" +- cpl_cfitsio_check_lib="libcfitsio.a" ++ cpl_cfitsio_check_lib="libcfitsio.so" + + cpl_cfitsio_incdirs="" + cpl_cfitsio_libdirs="" +@@ -668,7 +668,7 @@ + + cpl_wcs_check_version="$1" + cpl_wcs_check_header="wcslib/wcslib.h" +- cpl_wcs_check_lib="libwcs.a" ++ cpl_wcs_check_lib="libwcs.so" + + cpl_wcs_includes="" + cpl_wcs_libraries="" +@@ -900,8 +900,8 @@ + + cpl_fftw_check_version="$1" + cpl_fftw_check_header="fftw3.h" +- cpl_fftw_check_lib="libfftw3.a" +- cpl_fftwf_check_lib="libfftw3f.a" ++ cpl_fftw_check_lib="libfftw3.so" ++ cpl_fftwf_check_lib="libfftw3f.so" + + cpl_fftw_includes="" + cpl_fftw_libraries="" diff --git a/sci-astronomy/cpl/files/cpl-6.1.1-use-system-ltdl.patch b/sci-astronomy/cpl/files/cpl-6.1.1-use-system-ltdl.patch new file mode 100644 index 000000000000..a0c23a75d38c --- /dev/null +++ b/sci-astronomy/cpl/files/cpl-6.1.1-use-system-ltdl.patch @@ -0,0 +1,46 @@ +use system libtdl from libtool instead of bundled one +see http://www.flameeyes.eu/autotools-mythbuster/libtool/plugins.html +bicatali@gentoo.org + +diff -Nur cpl-6.1.1.orig/configure.ac cpl-6.1.1/configure.ac +--- cpl-6.1.1.orig/configure.ac 2012-06-04 18:38:01.000000000 +0100 ++++ cpl-6.1.1/configure.ac 2012-06-04 22:14:23.000000000 +0100 +@@ -60,8 +60,12 @@ + AC_ENABLE_STATIC(yes) + AC_ENABLE_SHARED(yes) + +-AC_LIBLTDL_CONVENIENCE +-AC_PROG_LIBTOOL ++LT_INIT([dlopen]) ++AC_CHECK_HEADER([ltdl.h], ++ [AC_CHECK_LIB([ltdl], [lt_dladvise_init], ++ [LIBLTDL=-lltdl], [LIBLTDL=])], ++ [LIBLTDL=]) ++ + AC_SUBST(INCLTDL) + AC_SUBST(LIBLTDL) + AC_SUBST(LIBTOOL_DEPS) +@@ -131,7 +135,6 @@ + CPL_CONFIG_FUNC + + # Configure subpackages +-AC_CONFIG_SUBDIRS(libltdl) + + if test ! x$"cpl_cv_with_system_cext" = xyes; then + AC_CONFIG_SUBDIRS([libcext]) +diff -Nur cpl-6.1.1.orig/Makefile.am cpl-6.1.1/Makefile.am +--- cpl-6.1.1.orig/Makefile.am 2012-06-04 18:38:01.000000000 +0100 ++++ cpl-6.1.1/Makefile.am 2012-06-04 19:07:41.000000000 +0100 +@@ -25,11 +25,10 @@ + DISTCLEANFILES = *~ + + if GASGANO_SUPPORT +-libltdl = libltdl + cpljava = cpljava + endif + +-SUBDIRS = $(libltdl) $(libcext) cplcore cplui cpldrs cpldfs $(cpljava) ++SUBDIRS = $(libcext) cplcore cplui cpldrs cpldfs $(cpljava) + + HTML_SUBDIRS = + diff --git a/sci-astronomy/cpl/files/cpl-6.6.1-use-system-ltdl.patch b/sci-astronomy/cpl/files/cpl-6.6.1-use-system-ltdl.patch new file mode 100644 index 000000000000..37ef2b550eda --- /dev/null +++ b/sci-astronomy/cpl/files/cpl-6.6.1-use-system-ltdl.patch @@ -0,0 +1,41 @@ +use system libtdl from libtool instead of bundled one +see http://www.flameeyes.eu/autotools-mythbuster/libtool/plugins.html +bicatali@gentoo.org + +--- cpl-7.0.orig/configure.ac 2012-06-04 18:38:01.000000000 +0100 ++++ cpl-7.0/configure.ac 2012-06-04 22:14:23.000000000 +0100 +@@ -60,8 +60,9 @@ + AC_ENABLE_STATIC(yes) + AC_ENABLE_SHARED(yes) + +-AC_LIBLTDL_CONVENIENCE +-AC_PROG_LIBTOOL ++LT_INIT([dlopen]) ++LT_CONFIG_LTDL_DIR([libltdl]) ++AC_LIB_LTDL + AC_SUBST(INCLTDL) + AC_SUBST(LIBLTDL) + AC_SUBST(LIBTOOL_DEPS) +@@ -131,7 +135,6 @@ + CPL_CONFIG_FUNC + + # Configure subpackages +-AC_CONFIG_SUBDIRS(libltdl) + + if test ! x$"cpl_cv_with_system_cext" = xyes; then + AC_CONFIG_SUBDIRS([libcext]) +--- cpl-7.0.orig/Makefile.am ++++ cpl-7.0/Makefile.am +@@ -25,11 +25,10 @@ + DISTCLEANFILES = *~ + + if GASGANO_SUPPORT +-libltdl = libltdl + cpljava = cpljava + endif + +-SUBDIRS = $(libltdl) $(libcext) cplcore cplui cpldrs cpldfs $(cpljava) ++SUBDIRS = $(libcext) cplcore cplui cpldrs cpldfs $(cpljava) + + HTML_SUBDIRS = + diff --git a/sci-astronomy/cpl/metadata.xml b/sci-astronomy/cpl/metadata.xml new file mode 100644 index 000000000000..c10d9ce830fc --- /dev/null +++ b/sci-astronomy/cpl/metadata.xml @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + The Common Pipeline Library (CPL) comprises a set of ISO-C libraries + that provide a comprehensive, efficient and robust software + toolkit. It forms a basis for the creation of automated astronomical + data-reduction tasks (known as "pipelines"). CPL Title Graphic The CPL + was developed to standardise the way VLT instrument pipelines are + built, to shorten their development cycle and to ease their + maintenance. However, it may be more generally applied to any similar + application, and the details of the CPL code have been engineered in a + way to make the library portable and flexible, as well as minimising + external dependencies. +</longdescription> +<use> + <flag name="gasgano"> + Enable support for <pkg>sci-astronomy/gasgano</pkg> file organizer + </flag> +</use> +</pkgmetadata> diff --git a/sci-astronomy/ds9-bin/Manifest b/sci-astronomy/ds9-bin/Manifest new file mode 100644 index 000000000000..f64aae78aa16 --- /dev/null +++ b/sci-astronomy/ds9-bin/Manifest @@ -0,0 +1,10 @@ +DIST ds9.linux.7.2.tar.gz 11947450 SHA256 a8adbc5cca40700210ed86b53d8aa9eae2fbb29f7a8bd2a2a04b086a091724d8 SHA512 e85029625d981b2a3152dc61fab0ac11ac1bafd64705efc9788a4c3cffb14ddfe1e24635e6e38d0ba26643aa8e5e2f0290f2ecef8949f9eb4065e53af802de85 WHIRLPOOL 0d34d3d8fc17ce9310cbe18830f21cb99ea9a2d8c11fc7b9f94c4fc83e7cd7ada638794e8f632f831498242fe3917981450f653e236ca3c3c7fe8b9186ec05f9 +DIST ds9.linux.7.4.tar.gz 12066575 SHA256 04c454eb6a3bf3cfcfef5ea078d2c99fac1833c0e391ce4a9b0eb76fe88cb6f7 SHA512 f56b6ca4ff67cd7163bba300500e1fa55a58185a09c0e41a33fd8f33f8aa393e07e58cb1bd48c39f558f0038180ee38129f3ad421743cdadddc3115f00c0cf64 WHIRLPOOL 35cc5269e2c793fb2eb56a6449603976597ab5164fd356ce5540501f201b3844a8dc845444db62eb8bf36a761ebc54a5e9cb065041ec79ca5d82cc3dc34c6155 +DIST ds9.linux64.7.2.tar.gz 12683459 SHA256 34b01e1b25673d15e8ec01c05ce629cc2699fe4b9ec071c7ef95e82f5f5594e4 SHA512 af9368d05e94ab43dff9dcc0c791333ccd7865e7666238c46cb216176caeb12188363b45380c97af0cef0d1802ea26acdda7f1562dc168536dd9ddac6d7ebb97 WHIRLPOOL 42a58b7a764946b35e4133bf2b83e091fe20bb13a968efb0d18ef5d3b09f0c39a6fd80266e3f9623317536309736fcd9857edfd43b0f2509486963ea47b9262a +DIST ds9.linux64.7.4.tar.gz 12555299 SHA256 55b0c6a3d1e8957b2abd007ef90378ce426a715aa033b47b576e907748924500 SHA512 dee66842b088881cee7dfcacb3cb220a71ef70ca3258afbe7ce7911a930c274fe5fc09487c4e54d2855179c80d940bf2e57a9b8a59ea0909ccc3213c92d81a65 WHIRLPOOL c7cc55f7f9ca1b54f81e38cf59f2fb674fb78d7110e165fbed13bc011623fcf22866a9082015e1e33c09ce9c6f513e608a7001b719a8d26977db92d5046c0a82 +DIST ds9.png.tar 10240 SHA256 a1a7c64b3de0374e04e06e7d7154d110bb518a6f5f95fd46e0a5a85ed5e1aa71 SHA512 c7d52733c63adcac00de652ac4be7a19e7a6497cf24cc6f7f78f0a9583cc94ce9c81e567af3c34f9124e15ee089abbd735c49b6cf8f2dcf6ea3cce6ed2c7302f WHIRLPOOL 055f4acf36c9e7994d7d17e3b151d65da1790a53a5d12d20714a942c7718a02e0aff138040c3566581a82023a4fd51870744ff82edf4eeeaefdc062927a099f6 +EBUILD ds9-bin-7.2.ebuild 940 SHA256 c66135114363a830c2995078f98c8f719a81b692f42bc43828b54691387138dc SHA512 e6129c90ebd179e5c1c50028e3fc13bda8c1914a33087ed337d77352874224dabd17fea78341b2ac37672c324bb89a1a956cfe7a79ade7c55470ab7a15854681 WHIRLPOOL 057b5f296f6543500d75319a635f253e045c46c751805c4099ba7b0f754177bec4f6cc873f703a72c4bd7a8020493f363bf932eb3a1a5b4bdcaafdf6b010e03c +EBUILD ds9-bin-7.4.ebuild 907 SHA256 f99f07674036ca91c8d2f20aada9beb2cd5b9e738e97e2ee2e941c0e0d5cead8 SHA512 67a2ca954d1ada8d534bd0b0b2085e0e2aa8a56d95cdc258cb1d99f3926d3f95c0c8b697427eaf7cdce5117d6270f487be03673919565f1006c8fef9cc021bee WHIRLPOOL 64e1db19f464357dbfa07dad016d84cc686ec52224b5bd2e3b44ee5f32c06ba590fb5e2bd6567408967ea5c57f54cc58460361f38fc902b110664e50b8766350 +MISC ChangeLog 2696 SHA256 292b31129bf9f18685bec8464eee79e07c6c92f941da22ef6f18a90f29edd4cc SHA512 1b098d764d3eaa8dd31a8ed381739d4641e934623a00ff189244f985b4a3376e1de2352e16ce1a7cccda914e1cfb98132787fb03a2cbddcb823d7084619e7388 WHIRLPOOL 88cf3c063d84bed9194f060487fe3b07db6867d91cc85d755a00230bf8dffcf1ce3c1f1e9debdb14cdf5ff54a1ead41aa84dd68406817383c734c524086a7cf4 +MISC ChangeLog-2015 1022 SHA256 5ce5f1e22498ef870b0d09c26504ba0b35809b3a2f181e9a9948c9bdf8c7b9b5 SHA512 e64594fb576bcd631f8d436fed5a67dbebd5c524dc725ad52da784aaee50a50a9f4e216fd7b960ccb4dbff5e65c02779b63b2f8b6d88a62f72310bafa054e767 WHIRLPOOL ab072725abd5bcab75b4501caecd58884bbb754eac87755598b12e88c1e97849c97b42e3d266cf93257c0ed5235d795a120fd5de471ebd79596d5705c8c76ff3 +MISC metadata.xml 1038 SHA256 4534f34692e3222da3f234a66b1e4e0f91e5cf482feebb9962f9555bde05efe5 SHA512 fbb11c21fccdc5550a7815c463d192307e808d2ff7c1775e236bd398c508cfeb321b9dea6bd15720dcae75cb88bbcc6fd78789bbc5b985eccb35789488c79fd0 WHIRLPOOL 179068dbb7fa134f5db44bcd71ac17537886cb95ff10525f9c0c315d5db3912fa11fdbd1f0564ac79a53ba0e2608f42dd51811957b0910641608271514de9bd4 diff --git a/sci-astronomy/ds9-bin/ds9-bin-7.2.ebuild b/sci-astronomy/ds9-bin/ds9-bin-7.2.ebuild new file mode 100644 index 000000000000..c472c726c45a --- /dev/null +++ b/sci-astronomy/ds9-bin/ds9-bin-7.2.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils + +DESCRIPTION="Data visualization application for astronomical FITS images" +HOMEPAGE="http://hea-www.harvard.edu/RD/ds9" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/ds9.png.tar + amd64? ( http://hea-www.harvard.edu/RD/ds9/download/linux64/ds9.linux64.${PV}.tar.gz ) + x86? ( http://hea-www.harvard.edu/RD/ds9/download/linux/ds9.linux.${PV}.tar.gz )" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + dev-libs/libxml2 + media-libs/fontconfig + media-libs/freetype + x11-libs/libX11 + x11-libs/libXScrnSaver + x11-libs/libXext + x11-libs/libXft + x11-libs/libXrandr + x11-libs/libXrender + x11-libs/xpa" + +DEPEND="" +S="${WORKDIR}" + +QA_PRESTRIPPED="usr/bin/ds9" +QA_PREBUILT="usr/bin/ds9" + +src_install () { + dobin ds9 + doicon ds9.png + make_desktop_entry ds9 "SAOImage DS9" ds9 +} diff --git a/sci-astronomy/ds9-bin/ds9-bin-7.4.ebuild b/sci-astronomy/ds9-bin/ds9-bin-7.4.ebuild new file mode 100644 index 000000000000..95bff1721725 --- /dev/null +++ b/sci-astronomy/ds9-bin/ds9-bin-7.4.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils + +DESCRIPTION="Data visualization application for astronomical FITS images" +HOMEPAGE="http://ds9.si.edu/site/Home.html" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/ds9.png.tar + amd64? ( http://ds9.si.edu/download/linux64/ds9.linux64.${PV}.tar.gz ) + x86? ( http://hea-www.harvard.edu/RD/ds9/download/linux/ds9.linux.${PV}.tar.gz )" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~amd64-linux" +IUSE="" + +RDEPEND=" + dev-libs/libxml2 + media-libs/fontconfig + media-libs/freetype + x11-libs/libX11 + x11-libs/libXScrnSaver + x11-libs/libXext + x11-libs/libXft + x11-libs/libXrandr + x11-libs/libXrender + x11-libs/xpa" + +DEPEND="" +S="${WORKDIR}" + +QA_PRESTRIPPED="usr/bin/ds9" +QA_PREBUILT="usr/bin/ds9" + +src_install () { + dobin ds9 + doicon ds9.png + make_desktop_entry ds9 "SAOImage DS9" ds9 +} diff --git a/sci-astronomy/ds9-bin/metadata.xml b/sci-astronomy/ds9-bin/metadata.xml new file mode 100644 index 000000000000..2566f1d1abf8 --- /dev/null +++ b/sci-astronomy/ds9-bin/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + The Smithsonian Astrophysical Observatory Image Deep Space 9 is an + astronomical imaging and data visualization application. It is the + new generation of the SAOImage software. DS9 supports FITS images + and binary tables, multiple frame buffers, region manipulation, many + scale algorithms and colormaps. It provides communication with + external analysis tasks and is configurable and extensible. DS9 + supports multiple frame buffers, mosaic images, tiling, blinking, + geometric markers, colormap manipulation, scaling, arbitrary zoom, + rotation, pan, and a variety of coordinate systems. DS9 also + supports FTP and HTTP data access. + This is the binary version (source version has a lot of source + bundling issues). +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/erfa/Manifest b/sci-astronomy/erfa/Manifest new file mode 100644 index 000000000000..cc384a93dfa1 --- /dev/null +++ b/sci-astronomy/erfa/Manifest @@ -0,0 +1,9 @@ +DIST erfa-1.2.0.tar.gz 305668 SHA256 efa60520bdad4c9df246d0bc4df8bf6bd9d01be1c5742540940996cf98ff783f SHA512 ead7a44b69048242cba34b0ab419eb97a1bcce6930d5834f5f00c8cae4cb331ee068cece08e51f918f7bd8eaaeada054006377876db01f7b7b4e86c26f17d311 WHIRLPOOL d360ec5d8f7d5db9c2706e82a04f62bba4fb120e0addb0b1522db30772572ebe3109ae62d12b869e323808ffeb176accab79c81fd27c94b3ec227cf2aa1b759d +DIST erfa-1.3.0.tar.gz 640176 SHA256 b3e709206fbd65aa32de06fd690c5a886b97274eecc84ba9711a5a50efba7c92 SHA512 c8dc110e2d581d7de79d0406fb5873201a795e1d7ce8dcf642125082d78d1cb00dd3fe44b76e1b7249014314abd840ad24615ad9d13cd447505af2271c1f31bd WHIRLPOOL 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000000000000..038873c3848b --- /dev/null +++ b/sci-astronomy/erfa/erfa-1.2.0.ebuild @@ -0,0 +1,17 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils + +DESCRIPTION="Essential Routines for Fundamental Astronomy" +HOMEPAGE="https://github.com/liberfa/erfa" +SRC_URI="https://github.com/liberfa/erfa/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0/1" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="static-libs" diff --git a/sci-astronomy/erfa/erfa-1.3.0.ebuild b/sci-astronomy/erfa/erfa-1.3.0.ebuild new file mode 100644 index 000000000000..ca155e99c48a --- /dev/null +++ b/sci-astronomy/erfa/erfa-1.3.0.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools eutils + +DESCRIPTION="Essential Routines for Fundamental Astronomy" +HOMEPAGE="https://github.com/liberfa/erfa" +SRC_URI="https://github.com/liberfa/erfa/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0/1" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="static-libs" + +src_prepare() { + default + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_install() { + default + prune_libtool_files --all +} diff --git a/sci-astronomy/erfa/erfa-1.4.0.ebuild b/sci-astronomy/erfa/erfa-1.4.0.ebuild new file mode 100644 index 000000000000..6a721cbc58f4 --- /dev/null +++ b/sci-astronomy/erfa/erfa-1.4.0.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools eutils + +DESCRIPTION="Essential Routines for Fundamental Astronomy" +HOMEPAGE="https://github.com/liberfa/erfa" +SRC_URI="https://github.com/liberfa/erfa/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0/1" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="static-libs" + +src_prepare() { + default + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_install() { + default + prune_libtool_files --all +} diff --git a/sci-astronomy/erfa/metadata.xml b/sci-astronomy/erfa/metadata.xml new file mode 100644 index 000000000000..0cab3847c4ed --- /dev/null +++ b/sci-astronomy/erfa/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + Essential Routines for Fundamental Astronomy is a C + library containing key algorithms for astronomy, and is based on + the SOFA library published by the International Astronomical Union + (IAU). +</longdescription> + <upstream> + <remote-id type="github">liberfa/erfa</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/esomidas/Manifest b/sci-astronomy/esomidas/Manifest new file mode 100644 index 000000000000..20af240b600f --- /dev/null +++ b/sci-astronomy/esomidas/Manifest @@ -0,0 +1,8 @@ +AUX esomidas-17.02-gentoo-setup.patch 369 SHA256 d6d646c812fc9e7c8a8418cbdfccce89c47355d9fa1e7ea8a6b03647749d652a SHA512 e55aac27cfa0034d9fdeb7f91e010a70f058fff00ed39858badd7b4561fefbb366c5ff0aba6a6265f2af4ab23ebca75e37c7067278688874c3294d583bfa2dfc WHIRLPOOL 00cca5f14f6c832d9f992854aecd195d5946535613ac4947bd9c977a89ecf1d07b0be14fd8b1ddf8a1e0c64779e4261451b8ed6b3f9ded042e79a92ac17d2a30 +AUX esomidas-17.02-output_to_stdout.patch 1276 SHA256 c3478db49a6aa2ad83fd9d98c7c5464b1435717a0b7aa9b882c1598661a98bde SHA512 b97402212ba45e45220ecf0bb4e8374c24c02dae554a686716b3de6fd3b40825df7150d0da7a389100176cadca2f29f1419a01efc763042d8b1f81f679ded057 WHIRLPOOL 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MIDVERS="17FEBpl1.2" + +DESCRIPTION="European Southern Observatory Munich Image Data Analysis System" +HOMEPAGE="http://www.eso.org/projects/esomidas/" +SRC_URI="ftp://ftp.eso.org/pub/midaspub/17FEB/sources/${MIDVERS}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0/8" +KEYWORDS="~amd64 ~x86" + +IUSE="+libtirpc" + +RDEPEND=" + sys-libs/readline:0= + x11-libs/motif:0= + x11-libs/libX11:= + x11-libs/libXt:= + !libtirpc? ( sys-libs/glibc[rpc(-)] ) + libtirpc? ( net-libs/libtirpc ) +" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MIDVERS}" + +PATCHES=( + "${FILESDIR}/${P}-output_to_stdout.patch" + "${FILESDIR}/${P}-gentoo-setup.patch" + "${FILESDIR}/${P}-rpc.patch" +) + +src_prepare() { + default + # variables for all phases and midas internal build system + export MIDASHOME="${WORKDIR}" + export MID_HOME="${S}" + export MID_HOME0="/usr/$(get_libdir)/esomidas/${MIDVERS}" + export MID_INSTALL="${MID_HOME}/install/unix" + export MID_SYS="${MID_HOME}/system/unix/" + export MID_WORK="${MIDASHOME}/midwork" + + # sadly this enforces static linking + if use libtirpc ; then + RPC_OPT="-I/usr/include/tirpc" + RPC_LIB="-ltirpc" + else + RPC_OPT="" + RPC_LIB="" + fi + + # create a gentoo option file + mkdir ${MID_INSTALL}/systems/Gentoo || die + cat >> ${MID_INSTALL}/systems/Gentoo/make_options <<-EOF + CC=$(tc-getCC) + LDCC=$(tc-getCC) + F77=$(tc-getFC) + FC=$(tc-getFC) + LD77_CMD=$(tc-getFC) + AR=$(tc-getAR) + RANLIB=$(tc-getRANLIB) + F_OPT= + C_OPT= + E_OPT=$(use amd64 && echo -Z) + SYS= + SH_OPT=-fPIC + SH_CMD=${MIDASHOME}/${MIDVERS}/local/make_shared + GUI_OPT=-DPATH_MAX=1024 + STRIP=echo + EDITFLAGS=-DVOID_SIGHANDLER -DHAVE_ALLOCA -DHAVE_ALLOCA_H -DHAVE_GETPW_DECLS -DHAVE_DIRENT_H -DHAVE_STRING_H -DLinux -DHAVE_UNISTD_H -DHAVE_STDLIB_H + EDITLIBS=-lreadline + UIMX=uimxR5 + INSTALL_FLAG=auto + RPC_OPT=${RPC_OPT} + RPC_LIB=${RPC_LIB} + EOF + sed -e "s|gcc|$(tc-getCC) \${LDFLAGS}|" \ + ${MID_INSTALL}/systems/Linux/make_shared \ + > ${MID_INSTALL}/systems/Gentoo/make_shared || die + sed -e 's|PC/Linux|Gentoo|' \ + ${MID_INSTALL}/systems/Linux/setup \ + > ${MID_INSTALL}/systems/Gentoo/setup || die + + # gentoo readline avoids exporting the xmalloc,xrealloc and xfree + append-cppflags -Dxrealloc=_rl_realloc -Dxmalloc=_rl_malloc -Dxfree=_rl_free +} + +src_configure() { + ${MID_INSTALL}/select all || die "packages selection failed" + ${MID_INSTALL}/preinstall -a || die "preinstallation failed" + ${MID_INSTALL}/install2 || die "configuration failed" + chmod 755 ${MID_HOME}/local/make_shared +} + +src_compile() { + CMND_YES=2 ${MID_INSTALL}/install3 -a || die "compilation failed" + [[ -x ${MID_HOME}/monit/midasgo.exe ]] || die "somewhere compilation failed" + emake -C monit syskeys.unix + ${MID_SYS}/inmidas -m ${MID_WORK} -j "@ compile.all" + ${MID_SYS}/inmidas -m ${MID_WORK} -j "@ ascii_bin no ; bye" +} + +src_test() { + local test_dir="${WORKDIR}/test_tmp" + mkdir ${test_dir} && cd ${test_dir} + ${MID_SYS}/inmidas -m ${MID_WORK} -j "@ vericopy ; @@ veriall -nodisplay ; bye" || die + test -f ${MID_WORK}/veriall_* || die "tests failed somewhere" + rm -rf ${test_dir} +} + +src_install() { + yes | ${MID_SYS}/cleanmidas + find ${MID_HOME} \( \ + -name "*.a" -o \ + -name "makefile" -o \ + -name "default.mk" -o \ + -name "*.h" -o \ + -name "*.inc" -o \ + -name COPYING -o \ + -name "*~" -o \ + -name "*.mod" \) -delete + rm -rf ${MID_HOME}/libsrc/ftoc* + find ${MID_HOME} -type d -empty -delete + + sed -e "s:^MIDVERS0=.*:MIDVERS0=${MIDVERS}:" \ + -e "s:^MIDASHOME0=.*:MIDASHOME0=/usr/$(get_libdir)/esomidas:" \ + -i ${MID_HOME}/system/unix/{inmidas,helpmidas,drs} + + cd "${WORKDIR}" + dodir /usr/$(get_libdir)/esomidas + mv "${S}" "${ED}"${MID_HOME0} + chmod 0644 "${ED}"${MID_HOME0}/contrib/baches/*/*.fit \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.fmt \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.datorg \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.prg \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.README + find "${ED}"${MID_HOME0} -name \*.sh | xargs chmod 0755 + chmod 0755 "${ED}"${MID_HOME0}/util/bench/brun + + dosym ${MID_HOME0}/system/unix/inmidas /usr/bin/inmidas + dosym ${MID_HOME0}/system/unix/gomidas /usr/bin/gomidas + dosym ${MID_HOME0}/system/ftoc-new ${MID_HOME0}/system/good-ftoc +} diff --git a/sci-astronomy/esomidas/esomidas-17.02.ebuild b/sci-astronomy/esomidas/esomidas-17.02.ebuild new file mode 100644 index 000000000000..acaa2eb1c23a --- /dev/null +++ b/sci-astronomy/esomidas/esomidas-17.02.ebuild @@ -0,0 +1,134 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils fortran-2 toolchain-funcs flag-o-matic + +# MIDVERS is actually used by MIDAS configuration scripts +export MIDVERS="17FEBpl1.2" + +DESCRIPTION="European Southern Observatory Munich Image Data Analysis System" +HOMEPAGE="http://www.eso.org/projects/esomidas/" +SRC_URI="ftp://ftp.eso.org/pub/midaspub/17FEB/sources/${MIDVERS}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0/8" +KEYWORDS="~amd64 ~x86" + +IUSE="" + +RDEPEND=" + sys-libs/readline:0= + x11-libs/motif:0= + x11-libs/libX11:= + x11-libs/libXt:=" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MIDVERS}" + +PATCHES=( + "${FILESDIR}/${P}-output_to_stdout.patch" + "${FILESDIR}/${P}-gentoo-setup.patch" +) + +src_prepare() { + default + # variables for all phases and midas internal build system + export MIDASHOME="${WORKDIR}" + export MID_HOME="${S}" + export MID_HOME0="/usr/$(get_libdir)/esomidas/${MIDVERS}" + export MID_INSTALL="${MID_HOME}/install/unix" + export MID_SYS="${MID_HOME}/system/unix/" + export MID_WORK="${MIDASHOME}/midwork" + + # create a gentoo option file + mkdir ${MID_INSTALL}/systems/Gentoo || die + cat >> ${MID_INSTALL}/systems/Gentoo/make_options <<-EOF + CC=$(tc-getCC) + LDCC=$(tc-getCC) + F77=$(tc-getFC) + FC=$(tc-getFC) + LD77_CMD=$(tc-getFC) + AR=$(tc-getAR) + RANLIB=$(tc-getRANLIB) + F_OPT= + C_OPT= + E_OPT=$(use amd64 && echo -Z) + SYS= + SH_OPT=-fPIC + SH_CMD=${MIDASHOME}/${MIDVERS}/local/make_shared + GUI_OPT=-DPATH_MAX=1024 + STRIP=echo + EDITFLAGS=-DVOID_SIGHANDLER -DHAVE_ALLOCA -DHAVE_ALLOCA_H -DHAVE_GETPW_DECLS -DHAVE_DIRENT_H -DHAVE_STRING_H -DLinux -DHAVE_UNISTD_H -DHAVE_STDLIB_H + EDITLIBS=-lreadline + UIMX=uimxR5 + INSTALL_FLAG=auto + EOF + sed -e "s|gcc|$(tc-getCC) \${LDFLAGS}|" \ + ${MID_INSTALL}/systems/Linux/make_shared \ + > ${MID_INSTALL}/systems/Gentoo/make_shared || die + sed -e 's|PC/Linux|Gentoo|' \ + ${MID_INSTALL}/systems/Linux/setup \ + > ${MID_INSTALL}/systems/Gentoo/setup || die + + # gentoo readline avoids exporting the xmalloc,xrealloc and xfree + append-cppflags -Dxrealloc=_rl_realloc -Dxmalloc=_rl_malloc -Dxfree=_rl_free +} + +src_configure() { + ${MID_INSTALL}/select all || die "packages selection failed" + ${MID_INSTALL}/preinstall -a || die "preinstallation failed" + ${MID_INSTALL}/install2 || die "configuration failed" + chmod 755 ${MID_HOME}/local/make_shared +} + +src_compile() { + CMND_YES=2 ${MID_INSTALL}/install3 -a || die "compilation failed" + [[ -x ${MID_HOME}/monit/midasgo.exe ]] || die "somewhere compilation failed" + emake -C monit syskeys.unix + ${MID_SYS}/inmidas -m ${MID_WORK} -j "@ compile.all" + ${MID_SYS}/inmidas -m ${MID_WORK} -j "@ ascii_bin no ; bye" +} + +src_test() { + local test_dir="${WORKDIR}/test_tmp" + mkdir ${test_dir} && cd ${test_dir} + ${MID_SYS}/inmidas -m ${MID_WORK} -j "@ vericopy ; @@ veriall -nodisplay ; bye" || die + test -f ${MID_WORK}/veriall_* || die "tests failed somewhere" + rm -rf ${test_dir} +} + +src_install() { + yes | ${MID_SYS}/cleanmidas + find ${MID_HOME} \( \ + -name "*.a" -o \ + -name "makefile" -o \ + -name "default.mk" -o \ + -name "*.h" -o \ + -name "*.inc" -o \ + -name COPYING -o \ + -name "*~" -o \ + -name "*.mod" \) -delete + rm -rf ${MID_HOME}/libsrc/ftoc* + find ${MID_HOME} -type d -empty -delete + + sed -e "s:^MIDVERS0=.*:MIDVERS0=${MIDVERS}:" \ + -e "s:^MIDASHOME0=.*:MIDASHOME0=/usr/$(get_libdir)/esomidas:" \ + -i ${MID_HOME}/system/unix/{inmidas,helpmidas,drs} + + cd "${WORKDIR}" + dodir /usr/$(get_libdir)/esomidas + mv "${S}" "${ED}"${MID_HOME0} + chmod 0644 "${ED}"${MID_HOME0}/contrib/baches/*/*.fit \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.fmt \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.datorg \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.prg \ + "${ED}"${MID_HOME0}/contrib/baches/*/*.README + find "${ED}"${MID_HOME0} -name \*.sh | xargs chmod 0755 + chmod 0755 "${ED}"${MID_HOME0}/util/bench/brun + + dosym ${MID_HOME0}/system/unix/inmidas /usr/bin/inmidas + dosym ${MID_HOME0}/system/unix/gomidas /usr/bin/gomidas + dosym ${MID_HOME0}/system/ftoc-new ${MID_HOME0}/system/good-ftoc +} diff --git a/sci-astronomy/esomidas/files/esomidas-17.02-gentoo-setup.patch b/sci-astronomy/esomidas/files/esomidas-17.02-gentoo-setup.patch new file mode 100644 index 000000000000..f6fb0515ee74 --- /dev/null +++ b/sci-astronomy/esomidas/files/esomidas-17.02-gentoo-setup.patch @@ -0,0 +1,12 @@ +--- a/install/unix/preinstall 2017-06-29 23:49:01.295996178 +0000 ++++ b/install/unix/preinstall 2017-06-29 23:50:21.835445329 +0000 +@@ -124,6 +124,9 @@ + if [ -d "Debian" -a -f "/etc/debian_version" ]; then + system="Debian" + ++elif [ -d "Gentoo" -a -f "/etc/gentoo-release" ]; then ++ system="Gentoo" ++ + elif [ "$uname" = "Darwin" ]; then + system="Darwin" + diff --git a/sci-astronomy/esomidas/files/esomidas-17.02-output_to_stdout.patch b/sci-astronomy/esomidas/files/esomidas-17.02-output_to_stdout.patch new file mode 100644 index 000000000000..bd24c3801d99 --- /dev/null +++ b/sci-astronomy/esomidas/files/esomidas-17.02-output_to_stdout.patch @@ -0,0 +1,42 @@ +From: Ole Streicher <debian@liska.ath.cx> +Date: Wed, 1 Mar 2017 09:31:31 +0100 +Subject: Run compilation in foreground and write log to stdout instead of a + file. + +--- + install/unix/install3 | 14 ++------------ + 1 file changed, 2 insertions(+), 12 deletions(-) + +diff --git a/install/unix/install3 b/install/unix/install3 +index ef2a415..1cc0b4e 100755 +--- a/install/unix/install3 ++++ b/install/unix/install3 +@@ -112,8 +112,6 @@ fi + + echo "" + echo "WARNING: MIDAS installation will delete all dependent files." +-echo " It will run in background and the output will be sent to" +-echo " the file <$MID_HOME/tmp/install.$$>" + echo "" + echo "Do you want to continue [yn]? (y): " $SV_NONL + unset answ +@@ -138,17 +136,9 @@ fi + + # do we have the 'time' command? + if [ $CMND_YES = 2 ] ; then +- /bin/bash $MID_INSTALL/install -i > $MID_HOME/tmp/install.$$ 2>&1 & ++ /bin/bash $MID_INSTALL/install -i + else +- time /bin/bash $MID_INSTALL/install -i > $MID_HOME/tmp/install.$$ 2>&1 & ++ time /bin/bash $MID_INSTALL/install -i + fi + +-echo "Running install in background" +-echo "Results are coming in $MID_HOME/tmp/install.$$" +-if [ "$1" = "-a" ]; then +- echo "Waiting for MIDAS installation to finish..." $SV_NONL +- wait +- echo "Finished." +- echo "" +-fi + exit 0 diff --git a/sci-astronomy/esomidas/files/esomidas-17.02-rpc.patch b/sci-astronomy/esomidas/files/esomidas-17.02-rpc.patch new file mode 100644 index 000000000000..d56ec03346c9 --- /dev/null +++ b/sci-astronomy/esomidas/files/esomidas-17.02-rpc.patch @@ -0,0 +1,33 @@ +diff -ruN 17FEBpl1.2.orig/lib/makefile 17FEBpl1.2/lib/makefile +--- 17FEBpl1.2.orig/lib/makefile 2017-04-26 11:44:02.000000000 +0200 ++++ 17FEBpl1.2/lib/makefile 2017-09-25 21:08:51.359595847 +0200 +@@ -58,7 +58,7 @@ + ## Ubuntu version 13.10 on + ## + ## $(SH_CMD) -o $(LIBMIDAS_SH) *.o $(DEV_NULL) +- $(SH_CMD) -o $(LIBMIDAS_SH) *.o -lm $(F2C_LIBS) $(DEV_NULL) ++ $(SH_CMD) -o $(LIBMIDAS_SH) *.o -lm $(F2C_LIBS) $(RPC_LIB) $(DEV_NULL) + + # for the AltLinux distro we had to change the line above to: + # $(SH_CMD) -o $(LIBMIDAS_SH) *.o -lm $(DEV_NULL) +diff -ruN 17FEBpl1.2.orig/libsrc/os/unix/makefile 17FEBpl1.2/libsrc/os/unix/makefile +--- 17FEBpl1.2.orig/libsrc/os/unix/makefile 2017-04-26 11:44:32.000000000 +0200 ++++ 17FEBpl1.2/libsrc/os/unix/makefile 2017-09-25 21:08:48.747583816 +0200 +@@ -19,7 +19,7 @@ + + include ../../../local/default.mk + +-CFLAGS += $(C_OPT) $(DEBUG) $(MEM_OPT) $(SH_OPT) $(OSSYS) $(SYS) -I$(INC) ++CFLAGS += $(C_OPT) $(DEBUG) $(MEM_OPT) $(SH_OPT) $(OSSYS) $(SYS) -I$(INC) $(RPC_OPT) + + LIB = $(LIBDIR)/libos.a + +@@ -43,7 +43,7 @@ + # testos.exe only for checking the linking process, in cannot be executed... + + testos.exe: testos.o $(LIB) +- $(LDCC) testos.o $(LIB) $(MLIB) $(SLIB) -o $@ ++ $(LDCC) testos.o $(LIB) $(MLIB) $(SLIB) $(RPC_LIB) -o $@ + $(STRIP) $@ + + $(LIB): $(OBJ) diff --git a/sci-astronomy/esomidas/metadata.xml b/sci-astronomy/esomidas/metadata.xml new file mode 100644 index 000000000000..8e581953fd75 --- /dev/null +++ b/sci-astronomy/esomidas/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + The ESO-MIDAS system provides general tools for image processing and data + reduction with emphasis on astronomical applications including imaging and + special reduction packages for ESO instrumentation at La Silla and the VLT at + Paranal. In addition it contains applications packages for stellar and + surface photometry, image sharpening and decomposition, statistics and + various others. +</longdescription> +<use> + <flag name="libtirpc">Build against <pkg>net-libs/libtirpc</pkg> for RPC support</flag> +</use> +</pkgmetadata> diff --git a/sci-astronomy/esorex/Manifest b/sci-astronomy/esorex/Manifest new file mode 100644 index 000000000000..9c38d1703a93 --- /dev/null +++ b/sci-astronomy/esorex/Manifest @@ -0,0 +1,14 @@ +AUX esorex-3.10-generate-manpage.patch 4865 SHA256 ca69cc20e5291dce3fe2bec20ee7ef4929f98c7a635208ff0e2d1a8645eb755c SHA512 5a2aeb18e08f36969d439f999f76933030b6a462b8e10041f20d3ffccefdf04f68daeecaaab7ee1694a0127bfe570cd0db8fbf9ced17a484eac2023929aff2b8 WHIRLPOOL 2314b9a10406d9c7ff695e9626dceade5670597dd7cfabf3a53f9016ae875c6e5263dd9040ce157a2cca88c2c3da5632175a3bdb97b59d36c27ddb5cc75dc9c9 +AUX esorex-3.10-remove-empty-configdir.patch 400 SHA256 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b33b81113aafd78a86a90e0a2889bdbab28000cc03509875615bc13638a05828af00bfaf9dbeecf144fa919501a29a5dac21fc10fbe8ba1d0be5d4cd871bffe7 diff --git a/sci-astronomy/esorex/esorex-3.10.2.ebuild b/sci-astronomy/esorex/esorex-3.10.2.ebuild new file mode 100644 index 000000000000..741a0b4ff28f --- /dev/null +++ b/sci-astronomy/esorex/esorex-3.10.2.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_AUTORECONF=1 +AUTOTOOLS_IN_SOURCE_BUILD=1 +AT_NO_RECURSIVE=1 + +inherit autotools-utils + +DESCRIPTION="ESO Recipe Execution Tool to exec cpl scripts" +HOMEPAGE="http://www.eso.org/sci/software/cpl/esorex.html" +SRC_URI="ftp://ftp.eso.org/pub/dfs/pipelines/libraries/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND=">=sci-astronomy/cpl-6.3:0=" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-3.9.6-use-shared-libs.patch + "${FILESDIR}"/${PN}-3.10-remove-private-ltdl.patch + "${FILESDIR}"/${PN}-3.10-generate-manpage.patch + "${FILESDIR}"/${PN}-3.10-remove-empty-configdir.patch + "${FILESDIR}"/${PN}-3.10-set-default-plugin-path.patch +) + +export CPLDIR="${EPREFIX}/usr" + +src_install() { + autotools-utils_src_install + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples +} diff --git a/sci-astronomy/esorex/esorex-3.12.3.ebuild b/sci-astronomy/esorex/esorex-3.12.3.ebuild new file mode 100644 index 000000000000..270226cd7bb0 --- /dev/null +++ b/sci-astronomy/esorex/esorex-3.12.3.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +DESCRIPTION="ESO Recipe Execution Tool to exec cpl scripts" +HOMEPAGE="http://www.eso.org/sci/software/cpl/esorex.html" +SRC_URI="ftp://ftp.eso.org/pub/dfs/pipelines/libraries/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND=">=sci-astronomy/cpl-6.3:=" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-3.9.6-use-shared-libs.patch + "${FILESDIR}"/${PN}-3.10-remove-private-ltdl.patch + "${FILESDIR}"/${PN}-3.10-generate-manpage.patch + "${FILESDIR}"/${PN}-3.10-remove-empty-configdir.patch + "${FILESDIR}"/${PN}-3.10-set-default-plugin-path.patch +) + +export CPLDIR="${EPREFIX}/usr" + +src_prepare() { + default + AT_NO_RECURSIVE=1 eautoreconf +} + +src_install() { + default + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples +} diff --git a/sci-astronomy/esorex/esorex-3.12.ebuild b/sci-astronomy/esorex/esorex-3.12.ebuild new file mode 100644 index 000000000000..270226cd7bb0 --- /dev/null +++ b/sci-astronomy/esorex/esorex-3.12.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +DESCRIPTION="ESO Recipe Execution Tool to exec cpl scripts" +HOMEPAGE="http://www.eso.org/sci/software/cpl/esorex.html" +SRC_URI="ftp://ftp.eso.org/pub/dfs/pipelines/libraries/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND=">=sci-astronomy/cpl-6.3:=" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-3.9.6-use-shared-libs.patch + "${FILESDIR}"/${PN}-3.10-remove-private-ltdl.patch + "${FILESDIR}"/${PN}-3.10-generate-manpage.patch + "${FILESDIR}"/${PN}-3.10-remove-empty-configdir.patch + "${FILESDIR}"/${PN}-3.10-set-default-plugin-path.patch +) + +export CPLDIR="${EPREFIX}/usr" + +src_prepare() { + default + AT_NO_RECURSIVE=1 eautoreconf +} + +src_install() { + default + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples +} diff --git a/sci-astronomy/esorex/files/esorex-3.10-generate-manpage.patch b/sci-astronomy/esorex/files/esorex-3.10-generate-manpage.patch new file mode 100644 index 000000000000..017eb2c8f776 --- /dev/null +++ b/sci-astronomy/esorex/files/esorex-3.10-generate-manpage.patch @@ -0,0 +1,123 @@ +Author: Ole Streicher <debian@liska.ath.cx> +Subject: Generate a manpage for esorex. +--- a/src/Makefile.am ++++ b/src/Makefile.am +@@ -62,3 +62,7 @@ + include $(top_builddir)/Makefile.purify + endif + ++esorex.man: esorex ++ sh esorex_create_man.sh ++ ++man1_MANS = esorex.man +--- /dev/null ++++ b/src/esorex_create_man.sh +@@ -0,0 +1,108 @@ ++#!/bin/sh ++ ++help2man -N -i $0 ./esorex | sed s/^:\ // | fgrep -v "***" > esorex.man ++<< instrument. ++ ++[NAME] ++esorex \- ESO Recipe Execution Tool ++ ++[DESCRIPTION] ++EsoRex is the ESO Recipe Execution Tool. It can list, configure and execute ++CPL-based recipes from the command line. ++ ++One of the features provided by the CPL is the ability to create ++data-reduction algorithms that run as plugins (dynamic libraries). These are ++called recipes and are one of the main aspects of the CPL data-reduction ++development environment. ++ ++As these recipes are dynamic libraries, it is not possible to run them ++directly from the command line. However, ESO provides several tools to do ++this, thus saving recipe developers the need to write such an application ++themselves. One of these is GASGANO (a GUI-based tool) and the other is ++ EsoRex (which runs from the command line) and is described here. ++ ++[ENVIRONMENT] ++All options can be set as environment parameters as well. See the previous ++paragraph for details. ++ ++[HINTS] ++.TP ++.SH File permissions ++When a recipe is used with the \fB\-\-suppress\-prefix\fR option, and the ++\fB\-\-output\-dir\fR is set to the current working directory, then the first ++execution of a recipe will work correctly, but subsequent executions may ++fail. This is due to output products being given \`read-only\' permission ++(to avoid the potential inadvertant loss of products). The recipe itself ++is unable to modify the permissions, and thus it fails when attempting to ++create the file. The solution (other than using a different output directory ++or prefixes) is to change the permission of these output files or delete ++them prior to any subsequent execution of that recipe. ++ ++This problem is less likely to occur in EsoRex v2+, due to the replacement of ++the \fB\-\-output\-overwrite\fR option with the \fB\-\-output\-readonly\fR ++(which is disabled by default). However, a determined user can still reach ++this situation, in which case the non-readable products must have their ++permissions changed, as described above. ++ ++.TP ++.SH Configuration files ++When creating configuration files, if the the recipe is provided on the ++command line, then EsoRex will generate the configuration file for this ++recipe. If no recipe name is given, then EsoRex will generate a configuration ++file for EsoRex itself. All configuration files are written in the ++$HOME/.esorex/ directory. ++ ++.TP ++.SH Memory checking ++It is possible to get EsoRex to check for memory leaks in the recipe ++that it is running, by enabling the \fB\-\-mem\-check\fR option. Then, at the ++conclusion of the recipe execution, and after memory deallocation, a list of ++all remaining allocated memory will be printed to screen. If there are no ++memory leaks, then no addition output is displayed. ++ ++[FILES] ++.TP ++.SH /etc/esorex.rc $HOME/.esorex/esorex.rc ++Default configuration files ++ ++The configuration file contains the EsoRex options, less the \`\-\-\' ++switch, but prefixed with \`esorex.caller.\'. Blank lines are ignored and ++lines beginning with \`#\' are treated as comments. ++ ++Here is an example configuration file. ++ ++ # Example EsoRex configuration file ++ # ++ esorex.caller.recipe-dir=/home/username/EsoRex/Plugins ++ esorex.caller.log-dir=. ++ esorex.caller.log-file=esorex.log ++ esorex.caller.log-file=esorex.log ++ esorex.caller.output-dir=. ++ esorex.caller.output-prefix=out_ ++ ++.TP ++.SH filename.sof ++A sof file contains a list of the input data. This data is specified in an sof ++file (which is just a text file), where each input file is specified with its ++associated classification and category. The format of each line in the sof ++file is as follows: ++ ++ full-path-to-file classification ++ ++Optionally, a third column may be provided. Permitted values are either RAW or ++CALIB. This is for when a recipe does not identify the type of input file, but ++as all ESO recipes are required to do so, this column is typically not needed. ++ ++An example sof file, for the mythological "ZIMOS" instrument, might look like this: ++ ++ /data/mos/ZIMOS.03-12-26T01:05:06.fits MOS_SCIENCE ++ /data/mos/ZIMOS.03-12-26T01:26:00.fits MOS_SCIENCE ++ /data/mos/ZIMOS.03-12-26T01:47:04.fits MOS_SCIENCE ++ /data/cal/master_bias4.fits MASTER_BIAS ++ /data/cal/grs_LR_red.3.tfits GRISM_TABLE ++ /data/gasgano/extract_table2.fits EXTRACT_TABLE ++ /data/cal/badpixel.3.tfits CCD_TABLE ++ ++For an concrete example for a specific instrument, check the documentation for that ++instrument. ++ diff --git a/sci-astronomy/esorex/files/esorex-3.10-remove-empty-configdir.patch b/sci-astronomy/esorex/files/esorex-3.10-remove-empty-configdir.patch new file mode 100644 index 000000000000..d492173da8eb --- /dev/null +++ b/sci-astronomy/esorex/files/esorex-3.10-remove-empty-configdir.patch @@ -0,0 +1,13 @@ +Author: Ole Streicher <debian@liska.ath.cx> +Description: Avoid creation of an empty directory "/usr/share/esorex/config" +--- a/src/Makefile.am ++++ b/src/Makefile.am +@@ -51,8 +51,6 @@ + + bin_PROGRAMS = esorex + +-config_DATA = +- + esorex_LDFLAGS = $(CPL_LDFLAGS) $(LIBLTDL) + esorex_LDADD = @GETOPT@ $(LIBCPLDFS) $(LIBCPLUI) $(LIBCPLCORE) $(LIBCEXT) $(LIBLTDL) + esorex_DEPENDENCIES = @GETOPT@ $(LIBLTDL) diff --git a/sci-astronomy/esorex/files/esorex-3.10-remove-private-ltdl.patch b/sci-astronomy/esorex/files/esorex-3.10-remove-private-ltdl.patch new file mode 100644 index 000000000000..e675cdbb8f73 --- /dev/null +++ b/sci-astronomy/esorex/files/esorex-3.10-remove-private-ltdl.patch @@ -0,0 +1,39 @@ +Author: Ole Streicher <debian@liska.ath.cx> +Subject: Remove private library libltdl and use the installed one. +--- a/Makefile.am ++++ b/Makefile.am +@@ -37,10 +37,7 @@ + if MAINTAINER_MODE + + MAINTAINERCLEANFILES = $(top_srcdir)/Makefile.in $(top_srcdir)/aclocal.m4 \ +- $(top_srcdir)/config.h.in $(top_srcdir)/configure config.status config.log \ +- $(top_srcdir)/libltdl/Makefile.in $(top_srcdir)/libltdl/aclocal.m4 \ +- $(top_srcdir)/libltdl/config-h.in $(top_srcdir)/libltdl/configure \ +- libltdl/config.status libltdl/config.log ++ $(top_srcdir)/config.h.in $(top_srcdir)/configure config.status config.log + + clean-local: clean-doxygen + +--- a/configure.ac ++++ b/configure.ac +@@ -30,7 +30,9 @@ + + ESO_CHECK_DOCTOOLS + +-AC_LIBLTDL_CONVENIENCE ++LT_INIT ++LT_CONFIG_LTDL_DIR([libltdl]) ++AC_LIB_LTDL + AC_SUBST(INCLTDL) + AC_SUBST(LIBLTDL) + +@@ -76,9 +78,6 @@ + # Determine the shared library suffix on this platform + AC_LTDL_SHLIBEXT + +- +-AC_CONFIG_SUBDIRS(libltdl) +- + AC_CONFIG_FILES(Makefile + Makefile.purify + doxygen/Doxyfile diff --git a/sci-astronomy/esorex/files/esorex-3.10-set-default-plugin-path.patch b/sci-astronomy/esorex/files/esorex-3.10-set-default-plugin-path.patch new file mode 100644 index 000000000000..1289bed5ab0d --- /dev/null +++ b/sci-astronomy/esorex/files/esorex-3.10-set-default-plugin-path.patch @@ -0,0 +1,28 @@ +Author: Ole Streicher <debian@liska.ath.cx> +Description: Set the default plugin path to the one where recipes are + installed in Debian. +--- a/etc/esorex.rc.in ++++ b/etc/esorex.rc.in +@@ -130,7 +130,7 @@ + # as well. Multiple directory heads may be specified, by separating the + # starting paths with colons (:). This option may also be set using the + # environment variable ESOREX_PLUGIN_DIR. +-esorex.caller.recipe-dir=@recipedir@/esopipes-plugins ++esorex.caller.recipe-dir=@recipedir@ + + # --suppress-link + # When TRUE, no symbolic link is created to the output product. However, if +--- a/acinclude.m4 ++++ b/acinclude.m4 +@@ -35,7 +35,10 @@ + AC_SUBST(configdir) + + if test -z "$recipedir"; then +- recipedir="`eval echo $libdir`" ++ recipedir="`eval echo $libdir`/cpl/plugins" ++ if test $libdir != "/usr/lib"; then ++ recipedir="$recipedir:/usr/lib/cpl/plugins" ++ fi + fi + AC_SUBST(recipedir) + diff --git a/sci-astronomy/esorex/files/esorex-3.9.6-use-shared-libs.patch b/sci-astronomy/esorex/files/esorex-3.9.6-use-shared-libs.patch new file mode 100644 index 000000000000..0cd348eaa446 --- /dev/null +++ b/sci-astronomy/esorex/files/esorex-3.9.6-use-shared-libs.patch @@ -0,0 +1,20 @@ +--- esorex-3.9.6/m4/cpl.m4.orig 2012-06-04 23:47:50.000000000 +0100 ++++ esorex-3.9.6/m4/cpl.m4 2012-06-04 23:48:45.000000000 +0100 +@@ -455,7 +455,7 @@ + AC_MSG_CHECKING([for libcext]) + + cpl_cext_check_header="cxtypes.h" +- cpl_cext_check_lib="libcext.a" ++ cpl_cext_check_lib="libcext.so" + + cpl_cext_incdirs="" + cpl_cext_libdirs="" +@@ -1314,7 +1314,7 @@ + AC_MSG_CHECKING([for CPL]) + + cpl_check_cpl_header="cpl.h" +- cpl_check_cpl_lib="libcplcore.a" ++ cpl_check_cpl_lib="libcplcore.so" + + cpl_incdirs="" + cpl_libdirs="" diff --git a/sci-astronomy/esorex/metadata.xml b/sci-astronomy/esorex/metadata.xml new file mode 100644 index 000000000000..dec7e069f528 --- /dev/null +++ b/sci-astronomy/esorex/metadata.xml @@ -0,0 +1,21 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + EsoRex is the ESO Recipe Execution Tool. It can list, configure and + execute CPL-based recipes from the command line. One of the features + provided by the CPL is the ability to create data-reduction algorithms + that run as plugins (dynamic libraries). These are called recipes and + are one of the main aspects of the CPL data-reduction development + environment. As these recipes are dynamic libraries, it is not + possible to run them directly from the command line. However, ESO + provides several tools to do this, thus saving recipe developers the + need to write such an application themselves. One of these is GASGANO + (a GUI-based tool) and the other is EsoRex (which runs from the + command line. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/fitsh/Manifest b/sci-astronomy/fitsh/Manifest new file mode 100644 index 000000000000..5a1dc9f203a9 --- /dev/null +++ b/sci-astronomy/fitsh/Manifest @@ -0,0 +1,3 @@ +DIST fitsh-0.9.2.tar.gz 596395 SHA256 3ce3ff89a0ad2b0c77d6fe22456e3b09972fcbce9370ce2d9664040e701c7539 SHA512 2a6e48b7dc684bf533b541d94dc5ead86166992763b7d0b78ec63916454a5aa515281babfab73c94bbc73b19c3de82e0f387548a4f01974f3593bbc8ddb15c61 WHIRLPOOL b77f411c6e0725b8714ad1b1fa4ea523a1420d936c174e61b81cb0cf759e5803649a3075c0389ee3ae17f3a0a09a166173d43dd9f728a261f1fb546bedf6cdeb +EBUILD fitsh-0.9.2.ebuild 380 SHA256 919952f2947a5e02c0de4d1914b940c03d9120836a4620109e8eba1d5ae3ed1b SHA512 caee694f28f052e7ca95a210fb7233a8b7d5bd7d6e8f155d86e6e7b7422df511c4b1f516ecde557719833d8ccf91cd8b5f1f02e96868ec9556fd18de50ec91b1 WHIRLPOOL 07f7188244023b8a2adc8d793d6e66f301bdd1b9f086af29b96eeb1c4a4e3b1ae28688aa5233b5ade2c5dad702281ef911d7d5748115a70cc428e8a4f208ad81 +MISC metadata.xml 701 SHA256 84f3f0812e8fee4809140ccbb034a052ad67ddb7397b12652a519befe5f076ba SHA512 9b1dd5aa1da2bb55080f61c97d2ed445a89c15f8233be6388c0273e886393874548d16eab72619ae89f5fd6c8f22158af9d143c76a24f0b67fa3de9634477079 WHIRLPOOL a772021618a19ba892ef1b39b9ca65cb1783fab48daf65189841f4ca899062bf9d9e8c1064b01bb7e380b08507b5d52e980b7b722fa7cb9dea027899b8a4f3d9 diff --git a/sci-astronomy/fitsh/fitsh-0.9.2.ebuild b/sci-astronomy/fitsh/fitsh-0.9.2.ebuild new file mode 100644 index 000000000000..86640da85703 --- /dev/null +++ b/sci-astronomy/fitsh/fitsh-0.9.2.ebuild @@ -0,0 +1,17 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Software package for astronomical image processing" +HOMEPAGE="https://fitsh.net/" +SRC_URI="https://fitsh.net/download/fitsh/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" diff --git a/sci-astronomy/fitsh/metadata.xml b/sci-astronomy/fitsh/metadata.xml new file mode 100644 index 000000000000..2ededf5318bd --- /dev/null +++ b/sci-astronomy/fitsh/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + The FITSH software package provides a set of independent binary + programs (called Tasks) that are designed for execution from a + UNIX command line shell or shell script. Each of these tasks + performs a specific operation, following the UNIX philosophy of + modular tools that performs a single step related to astronomical + data reduction and image processing. + </longdescription> +</pkgmetadata> diff --git a/sci-astronomy/fitspng/Manifest b/sci-astronomy/fitspng/Manifest new file mode 100644 index 000000000000..a3d7fb75d8f7 --- /dev/null +++ b/sci-astronomy/fitspng/Manifest @@ -0,0 +1,4 @@ +DIST fitspng-0.3.5.tar.gz 1124441 SHA256 0ee2bf9c79e0ef22b19a18d3d713fdeafcbcd2a0b70ef81cca146d2eba8592cb SHA512 268c93e88f1cee3aaddd7a0d157e221439b376ab4dae753ca6750ff7d02a4af7fe78a47d712965721e71fc80ebac8b2cb0e7f24097e7bb4f292655bdf7f6b60c WHIRLPOOL c2ccb97ad2397f5a7dfa2a9af20c877d42e6c89a7a94d2371b090e6b1d69c81b5c32ab0e78dafa6e763f5a5be3ed66913b285772b4134f6dd8cef1edbbdf7c1b +EBUILD fitspng-0.3.5.ebuild 505 SHA256 8b7d3cc9f875c053cb1e7db9f9989d6be864142076aaec9cd6dedb61b85a10f6 SHA512 ff433c2f54c7e14243e71bf1299b51f47110b989f204410a31d45bde71be2a7f9ba5ece8dfe3d206e79de71ef65db75bc3f5fffd482a945f1ebbace651c84fd8 WHIRLPOOL 52c7e1d1539630fef941a5be1324b69adcdc6f26f8c7dbe8660b0823338d596d72778cfca7f41701b720b31c34859d80afaae285ab1fd22bf542bf5a776178d9 +MISC ChangeLog 322 SHA256 b8991b88759aad9cea7d739c2eecd702d5ae02cf181bf0d29fcb8ea2feae9d3e SHA512 83970b5154ab94eaa55e4447e296095746d99f17bcdb6ae1404d12fc543931b89e1fe4207f574617c5ad304f540d4534132af8daaa8617350db13bf68922684c WHIRLPOOL 742167a638f644d6f797ee83b70ff279d2f6fb823373e470b747b767bd561e0f9f2a214683fbb15fca2501d44c45732691ec1e2c3ceca0676813352a73b55715 +MISC metadata.xml 795 SHA256 9aaa4d0c198193f5ed31459c77614088f5a2cc292ff7fb75ce1bdce1d0f6a756 SHA512 e02b309c53da075dc34c087d8f32cc394591001d8935c79fda8fef58d6dd4210aa71b1a2befe90818874c9bb90fccc0fac1f8d1fa157e39033eb29446a71696e WHIRLPOOL 172d6269b81431b8cd95565a4d291bcb065fbba0fb2b26d64d7912bbf27d48147635aa14adb6c61324be9fa1e43834a3b4f65a7d46c815b4eb2429ebd380fe01 diff --git a/sci-astronomy/fitspng/fitspng-0.3.5.ebuild b/sci-astronomy/fitspng/fitspng-0.3.5.ebuild new file mode 100644 index 000000000000..a99c1f1828a2 --- /dev/null +++ b/sci-astronomy/fitspng/fitspng-0.3.5.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="FITS to PNG converter" +HOMEPAGE="http://integral.physics.muni.cz/fitspng/" +SRC_URI="ftp://integral.physics.muni.cz/pub/${PN}/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc" + +RDEPEND=" + sci-libs/cfitsio:0= + media-libs/libpng:0=" +DEPEND="${RDEPEND}" + +src_install() { + default + use doc || rm -rf "${ED}"usr/share/doc/${PF}/html +} diff --git a/sci-astronomy/fitspng/metadata.xml b/sci-astronomy/fitspng/metadata.xml new file mode 100644 index 000000000000..d276a40d6f69 --- /dev/null +++ b/sci-astronomy/fitspng/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Fitspng is an utility intended to convert of the natural high + dynamic range of FITS images, directly representing measured data, + to the limited numerical range of PNG format widely used + in computer graphics. Fitspng implements a global tone mapping + technique by a set of tone functions using parameters provided + by user or by machine estimate on base of a robust count statistics. + Moreover, the conversion keeps an important FITS meta-information + as a text part of PNG header. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/funtools/Manifest b/sci-astronomy/funtools/Manifest new file mode 100644 index 000000000000..5d4d04eb1a5c --- /dev/null +++ b/sci-astronomy/funtools/Manifest @@ -0,0 +1,5 @@ +DIST funtools-1.4.7.tar.gz 3270079 SHA256 5388a7475e8c1fa92ff2429bf5de64212e79701dda6d24663bdab60293b63132 SHA512 d53bdb00a2eb9cd70bf60e34a10e5e16435a10b96f89cd55f0ffb686fac30438e2dfc1d823578286be51bee5caf0dcd1c0f257cd8e725cf8e5aa798a6f3c245a WHIRLPOOL e2928f6b193fea9509b7aaebff27ae1b5e48cf1005c4ddf1044d00dc62905ee3f8c5beacb8823ec0cc2c0c48becfff25fdbd2d2e8c1f7e99c95cc1e836a67a22 +EBUILD funtools-1.4.7.ebuild 1849 SHA256 f0d39e567b84184883e0e44d686e3780b098d55c674ebfc42de0a8eae60a1e56 SHA512 0b9f0dd6f35bad3e6e7dbd4ea9e386b26f65f5773785f594a965d5cf79a0871b66f10b640ecd15bae250410f78f64fb71cfb950011981a6f9d7a80b2e251cdb0 WHIRLPOOL 3ed125d336222b93fe2741497e16bd9c0efad1858f2aec7f82ae2d75eb1e22a2449f2652224440313b5caa48029f99683f32befe3094058ab041115d432c5732 +MISC ChangeLog 3253 SHA256 bb9fc00b1ac3d834973c6fb948f30c0309d680a44473bac12c4d5734c03e981b SHA512 a3b1017e734047ec4d8108c159df78f0504ec348ac8838374c1760c876defcce0abacf1230771765bddcf64a226bcd6f9f6546cf6cc9c3f1d726553a8384375f WHIRLPOOL d5c45ea1eeef8eb9d0f6263eb8848a0f976775c7f9c77dafb6d87b4bbf9ab3f5f8ed30ddd8cc78fda1fab949b5d2ed6273c102febeaa3abf825d2ff2fd9895d2 +MISC ChangeLog-2015 2490 SHA256 e92bc17ebe44a285f3cb5c8a75359cdaf021ae152fd9a30b2bf7ee5d76dd7bc6 SHA512 16a0735c3e521b27ebe0457042d1bef2bc9543955dd52403d225a9c80244a56041a384bb549e53febfecccf3aec5b2e9c208cc7f9d3f8d630d3ca1a3a665d6bd WHIRLPOOL 56e5877c50fb9ed82707cb115e89bbeca33f50e12d6a28dba18aae6e26634e78562e813731fb96b811fa4f57e98c53128c8326a38e2ea59db6bcf6ab5ca65d66 +MISC metadata.xml 729 SHA256 e20147ae5c75751d71a5241f4631885240c14e0210c91a38a95676174490edd7 SHA512 fd8156acb3dbfdd6c3d2120f70eba4c5d06d09d8dd4cafcb26ff6c1ea520ae51e9e1ee5fdefc4a7a03aee62b8bb521f37cabb781159121f3197cb44c4755fb35 WHIRLPOOL 87c7f9a7bc6dc2b9b0931bd03f3b48f4562173d8fdd4ddc331a9fa4394c7718b7175216f7368fdf18661257920f391e5ab8eecb8d230742cee0c2887f1ebff86 diff --git a/sci-astronomy/funtools/funtools-1.4.7.ebuild b/sci-astronomy/funtools/funtools-1.4.7.ebuild new file mode 100644 index 000000000000..a9b6e77aa319 --- /dev/null +++ b/sci-astronomy/funtools/funtools-1.4.7.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs autotools + +DESCRIPTION="FITS library and utlities for astronomical images" +HOMEPAGE="https://github.com/ericmandel/funtools" +SRC_URI="https://github.com/ericmandel/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0/1" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +RDEPEND=" + dev-lang/tcl:0= + sci-astronomy/wcstools:0= + sci-visualization/gnuplot + sys-libs/zlib:0=" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +src_prepare() { + default + # respect libdir, dont build wcs, respect toolchain + sed -e "/INSTALL/s|/lib|/$(get_libdir)|g" \ + -e 's|${OBJS}|$(OBJS)|g' \ + -e '/^SUBLIBS/s|wcs||g' \ + -e 's/mkdir/mkdir -p/g' \ + -e '/mklib/s|-o $(PACKAGE)|-o $(PACKAGE) $(LIBS)|g' \ + -e "s| ar| $(tc-getAR)|g" \ + -e "s|ar cruv|$(tc-getAR) cruv|g" \ + -e "s|WCS_INC.*=.*|WCS_INC = $($(tc-getPKG_CONFIG) --cflags wcstools)|g" \ + -i Makefile.in */Makefile.in || die + # fix race condition (when ccache is on) + sed -e 's|$(LIB):|$(LIB): FORCE|g' \ + -e '$aFORCE:' \ + -i */Makefile.in || die + eautoreconf +} + +src_configure() { + econf \ + --exec-prefix="${EPREFIX}/usr" \ + --enable-shared \ + --enable-dl \ + --with-wcslib="$($(tc-getPKG_CONFIG) --libs wcstools)" \ + --with-zlib="$($(tc-getPKG_CONFIG) --libs zlib)" \ + --with-tcl="${EPREFIX}/usr/$(get_libdir)" +} + +src_compile() { + emake + emake shtclfun +} + +src_install () { + default + # install missing includes + insinto /usr/include/funtools/fitsy + doins fitsy/*.h + # fix bug #536630 + mv "${ED}"/usr/share/man/man3/funopen.3 \ + "${ED}"/usr/share/man/man7/funopen.7 \ + || die + use doc && dodoc doc/*.pdf doc/*html doc/*c \ + && docompress -x /usr/share/doc/${PF}/*.c + use static-libs || rm -f "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-astronomy/funtools/metadata.xml b/sci-astronomy/funtools/metadata.xml new file mode 100644 index 000000000000..2d6b93e428d3 --- /dev/null +++ b/sci-astronomy/funtools/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + Funtools, is a minimal buy-in FITS library and utility package from + the SAO/HEAD. The Funtools library provides simplified + access to FITS images and binary tables, as well as to raw array and binary + event lists. The Funtools utilities provide high-level support for + processing astronomical data. + </longdescription> + <upstream> + <remote-id type="github">ericmandel/funtools</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/galaxy/Manifest b/sci-astronomy/galaxy/Manifest new file mode 100644 index 000000000000..9b163f135fa9 --- /dev/null +++ b/sci-astronomy/galaxy/Manifest @@ -0,0 +1,5 @@ +DIST galaxy-2.2.tar.gz 146675 SHA256 88d7bcfe7c25ad260f2f7b5abce2e3bb69c9e3e0661772a9016b2356160f1c00 SHA512 b3843f4ef7bdd60d761db019ded8af99b4c520ecc1c852a210bc6282751474254d9b9172e738015c7b01df57502655749051baac11448797fb9b71ecd4edd8d6 WHIRLPOOL 4d2bf2df59a89eb4cb459f2e90dbdc9992796c22d539fde9c0c918473eafdccb80ee4cad77c8da7c79b9d9c372431332cf0562ae5326ac718072d7c0f1128b53 +EBUILD galaxy-2.2-r1.ebuild 875 SHA256 cea4ac9069a88bd12c4f2360753104b3a106427d7823db4edf0fdca31b5bc4a1 SHA512 95d3b81d7c47ab879570bc674d163f1da62c616bcd6e1a68df371125cdca72cb269ad83fa6957e516f3cc3c49e5766e183034d4bb0d4e1e1e361a0b9ccdd81a1 WHIRLPOOL 9ee3b6afefd8a6d377609c9f8922dc479db91a0f3dbe4427f07da32156b8a407421f1bf875fd3aa08a9a650fcc4796fb986d520f61daa11b8bc0fba90ae5390d +MISC ChangeLog 2931 SHA256 3a0ce3fc22b2d49018b572b89b5be481ef5a086c5d2c8db7b95f66f715ae3754 SHA512 cedbad07a7166b36bd2814890fc573dbc141393b72e1fac48e888c624fb47d01f0ff89196c4b45d77bd5d82213ed4d6e70abc26f54e551a58c4fbd28c9156335 WHIRLPOOL 563827ce97d9e07113cd0afd4aa2b9ba565683e1c0d20bce6cf815979346bdbfcbcc9e7960d88da26a45f70ad71cdd84317bae9823fe1e629ab14d189d89a838 +MISC ChangeLog-2015 1806 SHA256 adae1ef7ec0eb3438c2f6fdf51634a21f9d586eddbca4d323d534f4aa6b99fe7 SHA512 54e5997ec361096666af2f643d661ec493a2c0a302d04630fd22710ee9eb39cea8f1ff37857ebff2a7b2158ec84783b3a5063c15eb20964b0b4a6b0f609d395a WHIRLPOOL d186ae04820337c67f0655b15354393664b163aae1c41d050c00ced8ec75a8bbb5c71dc211f7891a20121061036517e2259a02bc62231dc2b010ca697a165510 +MISC metadata.xml 491 SHA256 1766cb5db07e96aa3373730a5dd8110fa1b7d8836d836eb36c8b31d08e083920 SHA512 49d155fb1afa29408d5dca3b1ad7e50c7a84d23bafc932c1f087e40a956a7286e6348f1e6da01a40be5b4e21fe7740adb45492b97f83198cc8c1901b77e83eb6 WHIRLPOOL 7284ec022f6daa80d47d27e2b2672894008ef1ab0e7fdd5c8aeb14768865fd513aec0f49c4480abfc7a2b47f3818e0e3307fb327e8d20f2a4a3f15a742250549 diff --git a/sci-astronomy/galaxy/galaxy-2.2-r1.ebuild b/sci-astronomy/galaxy/galaxy-2.2-r1.ebuild new file mode 100644 index 000000000000..bce80f743988 --- /dev/null +++ b/sci-astronomy/galaxy/galaxy-2.2-r1.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit fdo-mime flag-o-matic toolchain-funcs + +# probably change every release +PID="1/3/0/3/13035936" + +DESCRIPTION="Stellar simulation program" +HOMEPAGE="http://www.kornelix.com/galaxy.html" +SRC_URI="http://www.kornelix.com/uploads/${PID}/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND="x11-libs/gtk+:3" +RDEPEND="${DEPEND} + x11-misc/xdg-utils" + +src_prepare() { + default + sed -e '/DOCDIR/ s/PROGRAM)/&-\$(VERSION)/g' \ + -e '/xdg-desktop-menu/d' \ + -i Makefile || die +} + +src_configure() { + tc-export CXX + append-cxxflags -pthread + append-ldflags -pthread + export PREFIX="${EPREFIX}/usr" + default +} + +pkg_postinst() { + fdo-mime_desktop_database_update +} + +pkg_postrm() { + fdo-mime_desktop_database_update +} diff --git a/sci-astronomy/galaxy/metadata.xml b/sci-astronomy/galaxy/metadata.xml new file mode 100644 index 000000000000..275904197454 --- /dev/null +++ b/sci-astronomy/galaxy/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Stellar simulation program. Watch a few stars move around each-other, + accelerated by their mutual attractions, or watch thousands of random + stars evolve into a spiral galaxy. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/gasgano/Manifest b/sci-astronomy/gasgano/Manifest new file mode 100644 index 000000000000..cfcf7716277c --- /dev/null +++ b/sci-astronomy/gasgano/Manifest @@ -0,0 +1,6 @@ +DIST VLT-PRO-ESO-19000-1932-V4.pdf 818369 SHA256 d370d6a57bed3cb7e47bb322e4cde5e314d37c6110e5370ea3099d241355ed68 SHA512 272da18caee1bb1b5228df76a7f09411120be39a4b421b79d48e0bfc09972f250322a718bf380d7a83c3a528151260139efdcd8d2482c6a36ad45d727d93cce1 WHIRLPOOL f13320ab0beaf5302eab56882ba7a8185543254e05cd1dada10a2fbc1652f45f74a20f326e703d9837d9abdee7499dbdfb7bdf1bd963f84937c6c24c3823b3f3 +DIST gasgano-2.4.8.tar.gz 9211627 SHA256 437a5d276123c8b5441d295004f89455f11cff8d62774c70e377dabf75dec13f SHA512 94fbc9721077b15d2ec06e296d1503a0e33cb845c831a4102740b84d600bc900324ec5293b9a977df0956bd02cd5adf9cc62989be860417e8014e97ead41967c WHIRLPOOL fbbd776a8adc5fa4079369c75bef4b90d04320685e5ae5495581f775895bb50ff0e5f0d11075e8605c7bcf732053b87c882ef0d2ca092f0dbdb6d1c771084d0a +EBUILD gasgano-2.4.8.ebuild 934 SHA256 7c2a1cf6cc227a26fb1e94e714c2609f5800761825320555d5ffda7b8177b5ab SHA512 a5c4bf5c1b6991b9a88640f31367bf43ecbcb785396ebbb500c3cd781e68e3d2641bd51c79a13c1527d85414396e5b270a9f713cfc8c191c02cb7d71f6a28de2 WHIRLPOOL 93a192a7d56028db21e8aca1939da084d82d9ddeba8f8d72667729ce3760b808eb6598a99e7ca43bbdcd7a7cf9ade47126f60649351ad7cf5e6d8b651baea777 +MISC ChangeLog 2808 SHA256 fbc468ae495bd3377d623f398b210433e65f6ad3b052379e0d0a34a218e5d89f SHA512 3f332ea78a8e33f25c21f10340c43833464319241a9c413855a61da49e6d8ad81fe40543673de43312f9c84f965b6e1438b49c2d3505da4b1fed7914ec07820b WHIRLPOOL 22b58e1e3e4f6f85809ad9dde1825535b419b5cfbb32073793f874cd22c7a5e54395d7065090c7234b3cfc272868813b60554c97bbfc3b6e8af997ad4d63fcf5 +MISC ChangeLog-2015 1786 SHA256 f34e05158f4f8158f9e871a526b2b8621cc577caaf17626a09771375870011ac SHA512 9c987bd8372d16a66ff6b31e9207860f8289765f123b40a2862ca7ac4e49fadb0b74606b2b4356529dc9f8495bf88c1f445b815653c9a9af29cfdeaaadf4ed7d WHIRLPOOL d39d835ff9b0d7015712f79fdce7e3e60885f3c8b2ca38d625f911dece3e890e593d45797bf36a7997638685f10f2d5a0af1b62cfa0fae8542e8387ac4d39c0a +MISC metadata.xml 730 SHA256 165d9b88316a4fc518fcecab362754cecfbebe0cc50dd1b74619ee6255baf942 SHA512 ab3f6da109440773987e1f366f3cfc67791abba6ec0cbe694149818634a4e150a842480c290e4ce83279ec890cbad51c613caf253fe6c2d2119029404b312959 WHIRLPOOL 4aba3fafb0daef15d2ce04dfb2ddd4907720c04d2239bc19716bab65d69dee988bd01c57260818594b014f21cf11282ce4d8ae47712ff286b8887c2b48478cd7 diff --git a/sci-astronomy/gasgano/gasgano-2.4.8.ebuild b/sci-astronomy/gasgano/gasgano-2.4.8.ebuild new file mode 100644 index 000000000000..3c0029d16c7c --- /dev/null +++ b/sci-astronomy/gasgano/gasgano-2.4.8.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils java-pkg-2 + +PDOC=VLT-PRO-ESO-19000-1932-V4 + +DESCRIPTION="ESO astronomical data file organizer" +HOMEPAGE="http://www.eso.org/sci/software/gasgano/" +SRC_URI="ftp://ftp.eso.org/pub/dfs/${PN}/${P}.tar.gz + doc? ( ${HOMEPAGE}/${PDOC}.pdf )" + +LICENSE="Apache-1.1" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc" + +DEPEND=">=virtual/jdk-1.7" +RDEPEND=" + >=virtual/jre-1.7 + dev-java/gnu-regexp + dev-java/junit + dev-java/jal" + +src_prepare() { + default + sed -i \ + -e "s:^BASE=\`pwd\`:BASE=${EPREFIX}/usr/share/${PN}:" \ + -e 's:$BASE/share/:$BASE/lib/:g' \ + bin/gasgano || die +} + +src_install() { + dobin bin/* + java-pkg_dojar share/*.jar + insinto /usr/share/${PN} + doins -r config + make_desktop_entry gasgano "Gasgano FITS Organizer" + use doc && newdoc "${DISTDIR}"/${PDOC}.pdf user-manual.pdf +} diff --git a/sci-astronomy/gasgano/metadata.xml b/sci-astronomy/gasgano/metadata.xml new file mode 100644 index 000000000000..a2e22f3fb87f --- /dev/null +++ b/sci-astronomy/gasgano/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Gasgano is a Data File Organiser developed and maintained by ESO to + help its user community to manage and organise in a systematic way the + astronomical data observed and produced by all VLT compliant + telescopes, i.e. by telescopes which are being operated through + Observation Blocks. The tool also supports FITS files which are not + generated by those telescopes but with a limited number of + functionalities. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/gnuastro/Manifest b/sci-astronomy/gnuastro/Manifest new file mode 100644 index 000000000000..1154f1b7ea2b --- /dev/null +++ b/sci-astronomy/gnuastro/Manifest @@ -0,0 +1,3 @@ +DIST gnuastro-0.3.tar.gz 4525361 SHA256 8a5bc2f977d4839f820d7423d10a6b94391a9571df97a64b9feb99a117973d81 SHA512 08556fd0de196c331cfd68e4b385fbef5c130fa9c914889367f4e3637b8dc6270a2424ef92c6641ec803c355d0577cebf3ace5ad76a7024f0414bb516338beac WHIRLPOOL 1fea9c239f896be1b931a2c7ab64041e9cdaeba95b24c76058169a7337d3c4a360b86e1d11747fe74b3af8122ed8eea719ee4db2f5601d72b67c3421ed4f1e7a +EBUILD gnuastro-0.3.ebuild 929 SHA256 5b1ee66b8e74332f6f5f06f72ba62712be57af7df1a9dccabb183a976629cd6b SHA512 4d3e3f27c4c11e55002236a5fa708b63638bad3b47e553b49e5f140eacf443ff71e0b455276a5f413fab463aa4d4a263e860e040276f52aee6dac24a81cbabff WHIRLPOOL 0eabd00f9a06cbf10c4cd676b9cf7a5946ef0bef24595a6300fe9da379d79ec28dd4fa5243c10faac9f7fff02ff7dfa6959e90c012f0f0b70353c2aeb3f59878 +MISC metadata.xml 988 SHA256 4ffb2c1a3f5cd3327f2f08faa015e79b96534e91c682d2661c8eba93ead91ef5 SHA512 208e0ea993adb14966523de6b012b6c2a97c6373e9a7bf03039dd50d32b03cd07a1a5da5196081a18b39b93d7d7d5d078b283a949b8b258f3f966cc2df00d00f WHIRLPOOL 1677ebc48324fde1b96eae76a46cc29a798c9ed848b40f231fd48cf053be6c19daca08b8e4c12da3650e8d99a3eae182f0c38c8b25b526ffb759bb8559469eb0 diff --git a/sci-astronomy/gnuastro/gnuastro-0.3.ebuild b/sci-astronomy/gnuastro/gnuastro-0.3.ebuild new file mode 100644 index 000000000000..54ffe177332a --- /dev/null +++ b/sci-astronomy/gnuastro/gnuastro-0.3.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils autotools + +DESCRIPTION="GNU Astronomy Utilities" +HOMEPAGE="https://www.gnu.org/software/gnuastro" +SRC_URI="mirror://gnu/${PN}/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0/1" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="static-libs threads" + +# jpeg, pdf, and libgit2 are forced deps +# because they are automagically detected. + +RDEPEND=" + app-text/ghostscript-gpl + dev-libs/libgit2:= + sci-astronomy/wcslib:0= + sci-libs/cfitsio:0= + sci-libs/gsl:0= + virtual/jpeg:0= +" +DEPEND="${RDEPEND}" + +src_prepare() { + default + sed -i -e 's/-O3//' configure.ac || die + eautoreconf +} + +src_configure() { + local myeconfargs=( + --enable-bin-op-alltypes + $(use_enable static-libs static) + $(use_enable threads) + ) + econf ${myeconfargs[@]} +} + +src_install() { + default + use static-libs || prune_libtool_files --all +} diff --git a/sci-astronomy/gnuastro/metadata.xml b/sci-astronomy/gnuastro/metadata.xml new file mode 100644 index 000000000000..c91cdd639148 --- /dev/null +++ b/sci-astronomy/gnuastro/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + The GNU Astronomy Utilities (Gnuastro) is an official GNU package + consisting of various programs and library functions for the + manipulation and analysis of astronomical data. All the programs + share the same basic command-line user interface for the comfort + of both the users and developers. Gnuastro is written to comply + fully with the GNU coding standards so it integrates finely with + the GNU/Linux operating system. This also enables astronomers to + expect a fully familiar experience in the source code, building, + installing and command-line user interaction that they have seen + in all the other GNU software that they use. + </longdescription> +</pkgmetadata> diff --git a/sci-astronomy/healpix/Manifest b/sci-astronomy/healpix/Manifest new file mode 100644 index 000000000000..018165435e51 --- /dev/null +++ b/sci-astronomy/healpix/Manifest @@ -0,0 +1,6 @@ +DIST Healpix_3.30_2015Oct08.tar.gz 23465221 SHA256 efcc8ff9775f393bd3e7e9d36202126e34e5c762ee568495a728329fa6650bfb SHA512 a7be82687a2188f5dff99c6826355e3290ccc91cc440e67267c58fa13af9fa5d301eca9b37676ef6f0af262b2ff1c06e722d0dcd3aca00a4c9d2794bc666c0c7 WHIRLPOOL 56584726daa1efd8809440cb7608c82a6b2ee6f1f35ddff701e98d3ddc3c77c0a3c339003c0b08e150747db5c6b0eb18da9ef153f89e1f33bc897e4135692152 +DIST Healpix_3.31_2016Aug26.tar.gz 23834899 SHA256 ddf437442b6d5ae7d75c9afaafc4ec43921f903c976e25db3c5ed5185a181542 SHA512 fd80e9ed80d19e438134f63c3d13802f63c4cd1b9f3596807e67d4ba5ff814e652a130d038449269d6ead271085eb0ab74884b2d768d8531066727377c457f9c WHIRLPOOL 3ae297b5fc0235162870af6ab8161ad87bd0f33a2e20c807da0d3faa2a7c2b0ac7b194e5c535ec74fa1d36d9571c1eff8d54606360b47d61253fdadd24261d0f +EBUILD healpix-3.30.ebuild 3133 SHA256 793944f646b889e072423e086dfff90699e5d41446dc049fee82eac432a90016 SHA512 cd0a0ef795cbd11f84f126411c7fd72798d035306f25e76d5659fa5c084e38337492148c953bd013e22998c2107e7e5f1bcd46a0b94a95ed4ff7dd186b4c59ef WHIRLPOOL 7289b82cc45f3577856d865c69f5ecf42d239d3b4eff0f109c6d3f094b32faad02174804e0f99ce112ddd30b590133ce9e4b4f3b3dfb794a20b7ce9990e7a1d1 +EBUILD healpix-3.31.ebuild 3133 SHA256 ea835eafc8e52c9d9f776adb35e346650281b52d55db372442779b2906602999 SHA512 51d64602f658c9ab2ab81ca4529415fe19c1cbd2e00d48ca352257a11c60d666464da7b7e6b09224152cad8af7b90d3d41f7ede5cb84911aaec2724797002714 WHIRLPOOL 2b6b37a1c5fb18c426c3b914986d3a5f5500eecaae31b7fe6323c50b79fce58bb73e8cf1e261707364d3aacb6ad27e5caf0f6391cad6d1553b4347cb35341066 +MISC ChangeLog 473 SHA256 1620bd2dc6414cde4464abdff7c9154a6a4caa305cb2d2e159609331a54489f6 SHA512 6605b490131636baeb862f5ac971e10dc116fa50274cb9fa4da36de7a9ac25258891fdd7ddd8ada8aa1f59a4e3d44f8f326859a42d47e226e93904967f248074 WHIRLPOOL d51fd9958cb87fb46dfe5f0d8773639f9888e9770667d2fba6ad3af71c96b5dbc805d53f9e5687c36c2843e66eac70079f7e17966ffe05ef277605c39ef9bb9d +MISC metadata.xml 736 SHA256 6b4f51727f5233cc57315204cf5582f83e236f3b5fa30f372029a0139044853b SHA512 1c1b23603bf390ebf8258f75a0867f2a0eb640099c2fbba9db5377449945aff71df8eac9c4c83391e838f1785fca1ce64b7acacd112f7a3b1ddde61a8923f1d5 WHIRLPOOL 9e3f437fa6dff4108bac2a1ff654683b1ac907f9e666be73d1baa0bf8c0a110e83030ec8db27bf4668ac3d31e6d3584bd5ae0decf8079ba3003b44cf08cc4dc1 diff --git a/sci-astronomy/healpix/healpix-3.30.ebuild b/sci-astronomy/healpix/healpix-3.30.ebuild new file mode 100644 index 000000000000..e446fc060467 --- /dev/null +++ b/sci-astronomy/healpix/healpix-3.30.ebuild @@ -0,0 +1,140 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools toolchain-funcs eutils java-pkg-opt-2 java-ant-2 + +MYP="Healpix_${PV}" +MYPF=${MYP}_2015Oct08 + +DESCRIPTION="Hierarchical Equal Area isoLatitude Pixelization of a sphere" +HOMEPAGE="http://healpix.sourceforge.net/" +SRC_URI="mirror://sourceforge/healpix/${MYP}/${MYPF}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +# might add fortran in the future if requested +IUSE="cxx doc idl java openmp static-libs test" + +RDEPEND=" + >=sci-libs/cfitsio-3 + idl? ( + dev-lang/gdl + sci-astronomy/idlastro ) + java? ( >=virtual/jre-1.6:* )" + +DEPEND="${RDEPEND} + virtual/pkgconfig + java? ( >=virtual/jdk-1.6:* test? ( dev-java/ant-junit4:0 ) )" + +S="${WORKDIR}/${MYP}" + +pkg_pretend() { + if use cxx && use openmp && [[ $(tc-getCXX)$ == *g++* ]] && [[ ${MERGE_TYPE} != binary ]]; then + tc-has-openmp || \ + die "You are using gcc but without OpenMP capabilities that you requested" + fi +} + +pkg_setup() { + java-pkg-opt-2_pkg_setup +} + +src_prepare() { + pushd src/C/autotools > /dev/null + eautoreconf + popd > /dev/null + # why was static-libtool-libs forced? + if use cxx; then + pushd src/cxx/autotools > /dev/null + sed -i -e '/-static-libtool-libs/d' Makefile.am || die + eautoreconf + popd > /dev/null + fi + # duplicate of idlastro (in rdeps) + rm -r src/idl/zzz_external/astron || die + mv src/idl/zzz_external/README src/idl/README.external || die + java-pkg-opt-2_src_prepare + default +} + +src_configure() { + pushd src/C/autotools > /dev/null + econf $(use_enable static-libs static) + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + econf \ + --disable-native-optimizations \ + $(use_enable openmp) \ + $(use_enable static-libs static) + popd > /dev/null + fi +} + +src_compile() { + pushd src/C/autotools > /dev/null + emake + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + emake + popd > /dev/null + fi + if use java; then + pushd src/java > /dev/null + eant dist-notest + popd > /dev/null + fi +} + +src_test() { + pushd src/C/autotools > /dev/null + emake check + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + emake check + popd > /dev/null + fi + if use java; then + pushd src/java > /dev/null + EANT_GENTOO_CLASSPATH="ant-junit4" ANT_TASKS="ant-junit4" eant test + popd > /dev/null + fi +} + +src_install() { + dodoc READ_Copyrights_Licenses.txt + pushd src/C/autotools > /dev/null + emake install DESTDIR="${D}" + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + emake install DESTDIR="${D}" + docinto cxx + dodoc ../CHANGES + popd > /dev/null + fi + use static-libs || prune_libtool_files --all + if use idl; then + pushd src/idl > /dev/null + insinto /usr/share/gnudatalanguage/healpix + doins -r examples fits interfaces misc toolkit visu zzz_external + doins HEALPix_startup + docinto idl + dodoc README.* + popd > /dev/null + fi + if use java; then + pushd src/java > /dev/null + java-pkg_dojar dist/*.jar + docinto java + dodoc README CHANGES + popd > /dev/null + fi + use doc && dodoc -r doc/html +} diff --git a/sci-astronomy/healpix/healpix-3.31.ebuild b/sci-astronomy/healpix/healpix-3.31.ebuild new file mode 100644 index 000000000000..489986685793 --- /dev/null +++ b/sci-astronomy/healpix/healpix-3.31.ebuild @@ -0,0 +1,140 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools toolchain-funcs eutils java-pkg-opt-2 java-ant-2 + +MYP="Healpix_${PV}" +MYPF=${MYP}_2016Aug26 + +DESCRIPTION="Hierarchical Equal Area isoLatitude Pixelization of a sphere" +HOMEPAGE="http://healpix.sourceforge.net/" +SRC_URI="mirror://sourceforge/healpix/${MYP}/${MYPF}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +# might add fortran in the future if requested +IUSE="cxx doc idl java openmp static-libs test" + +RDEPEND=" + >=sci-libs/cfitsio-3 + idl? ( + dev-lang/gdl + sci-astronomy/idlastro ) + java? ( >=virtual/jre-1.6:* )" + +DEPEND="${RDEPEND} + virtual/pkgconfig + java? ( >=virtual/jdk-1.6:* test? ( dev-java/ant-junit4:0 ) )" + +S="${WORKDIR}/${MYP}" + +pkg_pretend() { + if use cxx && use openmp && [[ $(tc-getCXX)$ == *g++* ]] && [[ ${MERGE_TYPE} != binary ]]; then + tc-has-openmp || \ + die "You are using gcc but without OpenMP capabilities that you requested" + fi +} + +pkg_setup() { + java-pkg-opt-2_pkg_setup +} + +src_prepare() { + pushd src/C/autotools > /dev/null + eautoreconf + popd > /dev/null + # why was static-libtool-libs forced? + if use cxx; then + pushd src/cxx/autotools > /dev/null + sed -i -e '/-static-libtool-libs/d' Makefile.am || die + eautoreconf + popd > /dev/null + fi + # duplicate of idlastro (in rdeps) + rm -r src/idl/zzz_external/astron || die + mv src/idl/zzz_external/README src/idl/README.external || die + java-pkg-opt-2_src_prepare + default +} + +src_configure() { + pushd src/C/autotools > /dev/null + econf $(use_enable static-libs static) + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + econf \ + --disable-native-optimizations \ + $(use_enable openmp) \ + $(use_enable static-libs static) + popd > /dev/null + fi +} + +src_compile() { + pushd src/C/autotools > /dev/null + emake + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + emake + popd > /dev/null + fi + if use java; then + pushd src/java > /dev/null + eant dist-notest + popd > /dev/null + fi +} + +src_test() { + pushd src/C/autotools > /dev/null + emake check + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + emake check + popd > /dev/null + fi + if use java; then + pushd src/java > /dev/null + EANT_GENTOO_CLASSPATH="ant-junit4" ANT_TASKS="ant-junit4" eant test + popd > /dev/null + fi +} + +src_install() { + dodoc READ_Copyrights_Licenses.txt + pushd src/C/autotools > /dev/null + emake install DESTDIR="${D}" + popd > /dev/null + if use cxx; then + pushd src/cxx/autotools > /dev/null + emake install DESTDIR="${D}" + docinto cxx + dodoc ../CHANGES + popd > /dev/null + fi + use static-libs || prune_libtool_files --all + if use idl; then + pushd src/idl > /dev/null + insinto /usr/share/gnudatalanguage/healpix + doins -r examples fits interfaces misc toolkit visu zzz_external + doins HEALPix_startup + docinto idl + dodoc README.* + popd > /dev/null + fi + if use java; then + pushd src/java > /dev/null + java-pkg_dojar dist/*.jar + docinto java + dodoc README CHANGES + popd > /dev/null + fi + use doc && dodoc -r doc/html +} diff --git a/sci-astronomy/healpix/metadata.xml b/sci-astronomy/healpix/metadata.xml new file mode 100644 index 000000000000..d83a73a67095 --- /dev/null +++ b/sci-astronomy/healpix/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + HEALPix is an acronym for Hierarchical Equal Area isoLatitude + Pixelization of a sphere. As suggested in the name, this pixelization produces a + subdivision of a spherical surface in which each pixel covers the same + surface area as every other pixel. +</longdescription> + <upstream> + <remote-id type="sourceforge">healpix</remote-id> + </upstream> + <use> + <flag name="idl">Install healpix IDL/GDL routines</flag> + </use> +</pkgmetadata> diff --git a/sci-astronomy/idlastro/Manifest b/sci-astronomy/idlastro/Manifest new file mode 100644 index 000000000000..0c7ebfb87102 --- /dev/null +++ b/sci-astronomy/idlastro/Manifest @@ -0,0 +1,6 @@ +DIST idlastro-20161220.tar.gz 1154282 SHA256 daa256200f9d34c1abc73dc823718cf7ed5791d23cb09e04dc3e8c8795fc0f88 SHA512 d61a2c3c27e9cb676639c76741063e97802ea149043f563d00b682e92a710ffd3005bce838c29ff4f1f734a5d64298999e5890cf858ffee083c3085dec3a5636 WHIRLPOOL 22da1be6fff60aba73a8cbcee8508fa8ecbad9aa0fb7e977339d3da41d1887d5542bcfe4ab2336c4e6ceb288fa6ed324521241d74bd6d73e91c61c17a9a42460 +EBUILD idlastro-20161220.ebuild 665 SHA256 50b1f20a53238e1bd9001ecf3f029d656bf0471b02b6a85f0f1edb9973589134 SHA512 20432900e46266cf93af52d3f470d6236bd7a3b25134daa85edff09e64abd3ff205b691504341e47ae722b1a50c1264f9ce22365de5991511d9cfc68b52b4109 WHIRLPOOL f9fa966ed882733ecbb34a38fa3d92a550a10f2d9560864a4730172210d952eef7118a87ef1f8fc6ed873cd1fefd6d53119df5af87ae6d8aa0a1cb9aed4e8f3e +EBUILD idlastro-99999999.ebuild 665 SHA256 50b1f20a53238e1bd9001ecf3f029d656bf0471b02b6a85f0f1edb9973589134 SHA512 20432900e46266cf93af52d3f470d6236bd7a3b25134daa85edff09e64abd3ff205b691504341e47ae722b1a50c1264f9ce22365de5991511d9cfc68b52b4109 WHIRLPOOL f9fa966ed882733ecbb34a38fa3d92a550a10f2d9560864a4730172210d952eef7118a87ef1f8fc6ed873cd1fefd6d53119df5af87ae6d8aa0a1cb9aed4e8f3e +MISC ChangeLog 2738 SHA256 a6ad243ff024e01e56390e2074fc77c2fcbc0bd6198bc1ff85f3f636e5120ab3 SHA512 b7b433b606485cd36065559741a78f1228b39cf65121f5064cff40a1747bcd61971778c2aac9fecdc689bcdd41ddc40013a6a11c7bb252d2a4a56fd1afd1e2ea WHIRLPOOL 3d37ffeb7abfbd2a4c3a97d3251cd8f81ee882678014f21c1cb55d4226da5f28327a1be424f5eee6780fb5fda47a4528c29746662c00e7e8454ad7e346366574 +MISC ChangeLog-2015 1537 SHA256 e1a5822648dc2cafe5392a1f754d7c92b520aa9e11ac9dd42d9b33148032c7d2 SHA512 794f0005fc94833bfa358828d41b7a03b7af11ce47fc6ec75e8b75fafac0124644b096572f27766ac8861d764e0243d5c2f3fa1032d9c46c59fce045c845ff3e WHIRLPOOL d7650abf0a06b582cbc67ba4d083ddb6cc912cfc3ebfb1af404a0dcf72d16a9ea422a2adc904bb3995695ede64a7291ad1ec6c494283a6680438659b3a220845 +MISC metadata.xml 784 SHA256 e3822b64a7f15e80e794dca465e5ce0363bd6b45263bc4083a4d708a72a0e6f8 SHA512 44876a7fb1a9e52065f29f756e3a11f58aceedbfe8b0dc94bc9a23afd36102349850bfb04354024c0b9941e60d48f6ada41bda4188366765688e32cbe2af22bf WHIRLPOOL e186e8ff83f802f0cd83f89e859667447b003d7fb72c58744ed55601e8bb98b4cbb4fff0ad7e878b2e37f7039b4eadaaf4bab2630300877c20b8ec3702d1fa7c diff --git a/sci-astronomy/idlastro/idlastro-20161220.ebuild b/sci-astronomy/idlastro/idlastro-20161220.ebuild new file mode 100644 index 000000000000..b126275565a3 --- /dev/null +++ b/sci-astronomy/idlastro/idlastro-20161220.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +if [[ ${PV} != 99999999 ]]; then + SRC_URI="https://idlastro.gsfc.nasa.gov/ftp/astron.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + S="${WORKDIR}" +else + inherit git-r3 + GIT_ECLASS="git-r3" + EGIT_REPO_URI="https://github.com/wlandsman/IDLAstro.git" + KEYWORDS="" +fi + +DESCRIPTION="Astronomical user routines for IDL" +HOMEPAGE="https://idlastro.gsfc.nasa.gov/" + +LICENSE="BSD-2 BSD" +SLOT="0" +IUSE="" +DEPEND="" +RDEPEND="dev-lang/gdl" + +src_install() { + insinto /usr/share/gnudatalanguage/${PN} + doins -r pro/* + dodoc *txt text/* +} diff --git a/sci-astronomy/idlastro/idlastro-99999999.ebuild b/sci-astronomy/idlastro/idlastro-99999999.ebuild new file mode 100644 index 000000000000..b126275565a3 --- /dev/null +++ b/sci-astronomy/idlastro/idlastro-99999999.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +if [[ ${PV} != 99999999 ]]; then + SRC_URI="https://idlastro.gsfc.nasa.gov/ftp/astron.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + S="${WORKDIR}" +else + inherit git-r3 + GIT_ECLASS="git-r3" + EGIT_REPO_URI="https://github.com/wlandsman/IDLAstro.git" + KEYWORDS="" +fi + +DESCRIPTION="Astronomical user routines for IDL" +HOMEPAGE="https://idlastro.gsfc.nasa.gov/" + +LICENSE="BSD-2 BSD" +SLOT="0" +IUSE="" +DEPEND="" +RDEPEND="dev-lang/gdl" + +src_install() { + insinto /usr/share/gnudatalanguage/${PN} + doins -r pro/* + dodoc *txt text/* +} diff --git a/sci-astronomy/idlastro/metadata.xml b/sci-astronomy/idlastro/metadata.xml new file mode 100644 index 000000000000..128ff66d9ecb --- /dev/null +++ b/sci-astronomy/idlastro/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + The IDL Astronomy Users Library is a central repository for + low-level astronomy software written in the commercial language + IDL or GNU version of it (GDL). The Library is not meant to be an + integrated package, but rather is a collection of procedures from + which users can pick and choose (and possibly modify) for their own + use. Submitted procedures are given a cursory testing, but are + basically stored in the Library as submitted. + </longdescription> +</pkgmetadata> diff --git a/sci-astronomy/kapteyn/Manifest b/sci-astronomy/kapteyn/Manifest new file mode 100644 index 000000000000..3ddacbf81de6 --- /dev/null +++ b/sci-astronomy/kapteyn/Manifest @@ -0,0 +1,6 @@ +AUX kapteyn-2.2-debundle_wcs.patch 2441 SHA256 6a2fd3eb10fc989a572c3446307dd7d5942e4d1651fd2b7b73c7b9caa23f730a SHA512 530d50ba8179939110eac6d4cb5b3611c67208994765f1ab1e50fc9a8cd30d56fe8f1aebc2b44e39f6ae3af534ca7ccb6bc58a4f1df555b49277d358d706e25f WHIRLPOOL cb8412732d26dedc914d526fd6bf4b9bb759e8f828d1a92a6e6dfdf7a9efea983dd84c14215f5f71d9d1539d3aa384d167e9eb08228c3e4c8c6291d1e96be9ab +DIST kapteyn-2.3.tar.gz 14496700 SHA256 ba328d4fa202c1b1c7641857cbf23d3f05c78d7eac33d34b97b1c4ee22efa876 SHA512 7095d9f1faed1937817af48416027391e19bf416187b8cc7f0cc5fb1227efe715c0c6ff945e0e021d1a5e82353e9c3ad2c3a1236d3453b4904d6ca2f2a47747b WHIRLPOOL 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2731238c09fe2623cab903bd99a6146d36adb37dc6e20fa8142a63cde3de38ae63c1d54fd5e43ec9f262a87b178335182402c460ec9b9975d86d020ecc876b2d WHIRLPOOL 9fbc3b28b7407126d4b939bba2fa9084e3a6f568aebf000876b7991b75d6fb0c5495b0f63f96134dc60b0f3b5549404b26ff9f7c5f83edbc353a9e6f7ff9bfde +MISC metadata.xml 618 SHA256 cc593721fb985a05f83d60948486b772a1d1c1858964afc01e3f30a758837060 SHA512 f0c7ebe71e55db31e91ebc2f3abbb700a2869cb305e5ea06cabc229dce6b73e8418c1943b3926a3a8fec9e8cc2ea117ffa675dcc80b46ec381a4094daf646fb1 WHIRLPOOL 5053e93acdb7c7ac58441996c1cd1e50ba13bc2e95cb2a20271d008796852e6f508084d143b8c53b550d2c9915da3bb8d6aa4345dd19c98bbba5716119e46c39 diff --git a/sci-astronomy/kapteyn/files/kapteyn-2.2-debundle_wcs.patch b/sci-astronomy/kapteyn/files/kapteyn-2.2-debundle_wcs.patch new file mode 100644 index 000000000000..035979b80bc7 --- /dev/null +++ b/sci-astronomy/kapteyn/files/kapteyn-2.2-debundle_wcs.patch @@ -0,0 +1,101 @@ +Use system wcslib + +Patch written by Kacper Kowalik <xarthisius@gentoo.org> + +--- a/setup.py ++++ b/setup.py +@@ -3,7 +3,8 @@ + from kapteyn import __version__ as version + from glob import glob + import sys, os +- ++from subprocess import Popen, PIPE ++from re import match + try: + import numpy + except: +@@ -14,21 +15,27 @@ + ''' + sys.exit(1) + +-try: +- wcslib_dir = glob('src/wcslib*/C/')[0] +-except: +- print ''' +--- Error. +-Unable to find WCSLIB source distribution. +-''' +- sys.exit(1) ++def pkgconfig(*packages, **kw): ++ flag_map = {'-I': 'include_dirs', '-L': 'library_dirs', '-l': 'libraries'} ++ arg = "--libs --cflags --modversion %s" % ' '.join(packages) ++ for tok in Popen(["pkg-config "+ arg],stdout=PIPE, shell=True).communicate()[0].split(): ++ token = tok.decode("utf-8") ++ if(match("[0-9]",token)): ++ kw.setdefault("version",[]).append(token) ++ else: ++ kw.setdefault(flag_map.get(token[:2]), []).append(token[2:]) ++ return kw + + include_dirs = [] + numdir = os.path.dirname(numpy.__file__) + ipath = os.path.join(numdir, numpy.get_include()) + include_dirs.append(ipath) + include_dirs.append('src') +-include_dirs.append(wcslib_dir) ++ ++WCSLIB = pkgconfig('wcslib') ++WCSVERSION = Popen(["pkg-config --modversion"],stdout=PIPE, shell=True).communicate()[0].split() ++ ++include_dirs += WCSLIB['include_dirs'] + + short_descr = "Kapteyn Package: Python modules for astronomical applications" + +@@ -94,27 +101,6 @@ + "xyz.c" + ] + +-wcslib_src = [ +- "cel.c", +- "lin.c", +- "log.c", +- "prj.c", +- "spc.c", +- "sph.c", +- "spx.c", +- "tab.c", +- "wcs.c", +- "wcsfix.c", +- "wcshdr.c", +- "wcsprintf.c", +- "wcstrig.c", +- "wcsunits.c", +- "wcsutil.c", +- "wcserr.c", +- "flexed/wcsulex.c", +- "flexed/wcsutrn.c" +-] +- + ndimg_src = [ + "nd_image.c", + "ni_filters.c", +@@ -125,8 +111,7 @@ + "ni_support.c", + ] + +-wcs_src = ( ['src/' + source for source in wcsmod_src] +- + [wcslib_dir + source for source in wcslib_src] ) ++wcs_src = ( ['src/' + source for source in wcsmod_src] ) + + _nd_image_src = ['src/ndimg/' + source for source in ndimg_src] + +@@ -168,7 +153,8 @@ + Extension( + "wcs", wcs_src, + include_dirs=include_dirs, +- define_macros=define_macros ++ define_macros=define_macros, ++ libraries=WCSLIB['libraries'] + ), + Extension( + "ascarray", diff --git a/sci-astronomy/kapteyn/kapteyn-2.3.ebuild b/sci-astronomy/kapteyn/kapteyn-2.3.ebuild new file mode 100644 index 000000000000..853ec1ed2cf1 --- /dev/null +++ b/sci-astronomy/kapteyn/kapteyn-2.3.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Collection of python tools for astronomy" +HOMEPAGE="http://www.astro.rug.nl/software/kapteyn" +SRC_URI="http://www.astro.rug.nl/software/kapteyn/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND=" + sci-astronomy/wcslib + dev-python/numpy[${PYTHON_USEDEP}]" +RDEPEND="${DEPEND} + dev-python/astropy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}]" + +DOCS=( CHANGES.txt README.txt doc/${PN}.pdf ) + +PATCHES=( "${FILESDIR}"/${PN}-2.2-debundle_wcs.patch ) + +python_prepare_all() { + rm -r src/wcslib-4.* || die + distutils-r1_python_prepare_all +} diff --git a/sci-astronomy/kapteyn/metadata.xml b/sci-astronomy/kapteyn/metadata.xml new file mode 100644 index 000000000000..57bfac11edbd --- /dev/null +++ b/sci-astronomy/kapteyn/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + The Kapteyn Package is a collection of Python modules and applications + made by the computer group of the Kapteyn Astronomical Institute, + University of Groningen, The Netherlands. The purpose of the package + is to provide tools for the development of astronomical applications + with Python. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/metadata.xml b/sci-astronomy/metadata.xml new file mode 100644 index 000000000000..49245f7d22e6 --- /dev/null +++ b/sci-astronomy/metadata.xml @@ -0,0 +1,39 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE catmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<catmetadata> + <longdescription lang="en"> + The sci-astronomy category contains software that can be used + in astronomical and related scientific environments. + </longdescription> + <longdescription lang="de"> + Die Kategorie sci-astronomy enthält Software, die in astronomischen + und verwandten wissenschaftlichen Umfeldern genutzt wird. + </longdescription> + <longdescription lang="es"> + La categoría sci-astronomy contiene programas que pueden ser utilizados + en entornos relacionados con la astronomía. + </longdescription> + <longdescription lang="ja"> + sci-astronomyカテゴリーには天文学の科学的な分野に利用される + ソフトウェアが含まれています。 + </longdescription> + <longdescription lang="nl"> + De sci-astronomy categorie bevat software, die in astronomische + en gerelateerde wetenschappelijke omgevingen wordt gebruikt. + </longdescription> + <longdescription lang="vi"> + Nhóm sci-astronomy chứa các phần mềm dùng trong thiên văn + và liên quan đến khoa học. + </longdescription> + <longdescription lang="it"> + La categoria sci-astronomy contiene programmi per l'astronomia. + </longdescription> + <longdescription lang="pt"> + A categoria sci-astronomy contém programas que podem ser usados + em ambientes relacionados a astronomia. + </longdescription> + <longdescription lang="pl"> + Kategoria sci-astronomy zawiera programy naukowe związane z astronomią. + </longdescription> +</catmetadata> + diff --git a/sci-astronomy/missfits/Manifest b/sci-astronomy/missfits/Manifest new file mode 100644 index 000000000000..b732f7d0cd1e --- /dev/null +++ b/sci-astronomy/missfits/Manifest @@ -0,0 +1,4 @@ +DIST missfits-2.8.0.tar.gz 428404 SHA256 65772902ec29c33768bd579aefa577acbd93b671423e5edb2621ffaddd695912 SHA512 32727f5eb30573a1cedacb8900e2536867e4815059eee32e64e3db65be9291b8a91b9f45b2c9f3cf6fc2a8cc448012ea3d502bdd9dee516008e17d5086aee795 WHIRLPOOL d3b7a429b3fb97ebf7df2fa7c64fc20579cad9f6ba2ebeec9b58943d2b05a794eea4846b6cfa7fc9e33fc4e4bf3f7e09e4fcb2d7a5c63cd446f55107be280a7e +EBUILD missfits-2.8.0.ebuild 479 SHA256 f3e85572eca11fe91eba0e3067aabef57f5e79ec3401e9bcfcac924b9ddde430 SHA512 30f62f0439820e848050ae74f1a661ead3401ce4ad3046672c1ea058936020b27edcf1996d630a8b98aed37f492b89ec3c576f2fcdcd7af9ae4124cf47e73f32 WHIRLPOOL 9b8359cbfa1ff60f4d9cde0067d5a46873001345a6c2d86493ff2d3ddaf4240ae2bc6df1317bee53382a08e47f667a0964d790aaa6112cb7f28160af0ba196bb +MISC ChangeLog 322 SHA256 1e2eea200c2974aeab4e69e6ee819773a41327b1048f582919e9447ba35c1e26 SHA512 2ba407e85a96bd783665973711a689c08b8b55d99d149764d345d157e4fb4a233e2cc89bd4411dead445da3bc4adcc9faa5ea7ec8deb1cad82804ce43a2ffaa4 WHIRLPOOL 9b0dbba4e5f3017e263b7fc48041091c7a3cedc9caa50900867dd64a4b821ba3e8beef54dde3ab9e5bb27e884eda189aea38c4ba5f86f97b4dd9653d4d6eaac3 +MISC metadata.xml 646 SHA256 8adb9f3672c5a1b8216a6f7d4db637115dd807eb6c71d9c89b599af7290b382a SHA512 9585430922e0cfbecfb67333817e8ef9756aa99920489f6f1f7995e5b63dba8f7999b1eb119d829fd827bb386faf138c65abcab3de871c643b74503a66ac9150 WHIRLPOOL 20492d75df2cc2e0cb373523b94e7e04e7805082d920fc4856d6479e45a966b39b954d61c806c275f98c9203cd3e8e39b3e08510a1aad3f876bc81f26b011450 diff --git a/sci-astronomy/missfits/metadata.xml b/sci-astronomy/missfits/metadata.xml new file mode 100644 index 000000000000..3a1cc249871a --- /dev/null +++ b/sci-astronomy/missfits/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + MissFITS is a program that performs basic maintenance and packaging + tasks on FITS files using an optimised FITS library. MissFITS can: + * add/edit/remove FITS header keywords + * split/join Multi-Extension-FITS (MEF) files + * unpile/pile FITS data-cubes + * create/check/update FITS checksums, using R. Seaman’s protocol. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/missfits/missfits-2.8.0.ebuild b/sci-astronomy/missfits/missfits-2.8.0.ebuild new file mode 100644 index 000000000000..0d8b4cee3006 --- /dev/null +++ b/sci-astronomy/missfits/missfits-2.8.0.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Performs basic maintenance and packaging tasks on FITS files" +HOMEPAGE="http://www.astromatic.net/software/missfits/" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" +IUSE="doc" + +RDEPEND="" +DEPEND="${RDEPEND}" + +src_install () { + default + use doc && dodoc doc/* +} diff --git a/sci-astronomy/montage/Manifest b/sci-astronomy/montage/Manifest new file mode 100644 index 000000000000..df12d1820d1e --- /dev/null +++ b/sci-astronomy/montage/Manifest @@ -0,0 +1,11 @@ +AUX 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SHA512 d7d36bece0e94ad1d07d383b9277529c71ad9303dbd069a34d2e489b052a6d6317bb3f45170d273a25255836e6c5c7a70b570979ce4f9cd53303125d30f35274 WHIRLPOOL 73f99eeb2a162921f43f3b5fba4e885bfc14322020b279769dbc09b6d2b73d5beca3016fd9fc74f52ae937a1a695dbcf55e2aea7331a2358b038f75c713e6fea +EBUILD montage-5.0.ebuild 1583 SHA256 592982dad940c7f5e738baaf1c34cc0b94fbab74a8a4f61af2660942b06825c4 SHA512 d90cc853c3198c2625ff57c46ca12ccff9e75a283fde9e49b23f6b66440ff1643ecd0033c20a8c7d7e600adc85db4b1984b3ae913b0b9d0047398c45c51b83ed WHIRLPOOL e056d5b871c4714493be2b3d94fecaa4afb5f225dc818b1dc7f7da997cd6dc07ec9ef73806d76c604a0f4d22e3c752e73c412d7ef45d5e00119a230d88c113ee +MISC ChangeLog 882 SHA256 8862b05e5381a9ff3caf7cda11e783d2d49dd4701063697077f82e789b16e909 SHA512 86196a1e74f3dd9efeed0c4b96b0150ae5d92e6e44cd24f4e4fd9b1483186a7e32a3d39f0001f4200e353e33f5374e9172231656df527bb7c2744d326ea93a88 WHIRLPOOL 7f4a2087c5d07955659d3406c848160779c1f1757490e095b109ffb51f5ad89fbe7973af0d40f6fb38030ab98dcc0d0dafe3b8ccb9e586904480ae641629020e +MISC metadata.xml 1031 SHA256 fe008fffcd2507de188fba7741a85059807195770fa8448d00078f9a8acaef87 SHA512 b14dfef57d629cce61fda07b98a6dd375f2827d93da714bbd4eb359650d44b726c1cf3d6af181e280b913a8a80ee4a24c6e4e6b83a3219a59400a1257e517b53 WHIRLPOOL ee58a300ae6b56c0d1c2840d1d5e4c7bf77de743061ac68eb62779f9d6b8ff4f8e12e76a38ffa26fc0f836de158e9ba42a75cebbe8ea4ec678a54cb6f6633da0 diff --git a/sci-astronomy/montage/files/montage-4.1-fix_format_errors.patch b/sci-astronomy/montage/files/montage-4.1-fix_format_errors.patch new file mode 100644 index 000000000000..d29429ccfaad --- /dev/null +++ b/sci-astronomy/montage/files/montage-4.1-fix_format_errors.patch @@ -0,0 +1,23 @@ +Author: Ole Streicher <olebole@debian.org> +Description: Fix format security error for (s|f)printf +--- a/grid/Pegasus/hashtable.c ++++ b/grid/Pegasus/hashtable.c +@@ -4,8 +4,6 @@ + + #include <hashtable.h> + +-char *strdup(const char *s1); +- + int HT_debug = 0; + + /********************************************************/ +--- a/lib/src/coord/ccalc.c ++++ b/lib/src/coord/ccalc.c +@@ -25,7 +25,6 @@ + static int ConvertfromDD(char *fmt, char *clongprec, char *clatprec, + char *clon, char *clat, double *lon, double *lat); + static char *downcase(char *s); +-char *strdup(const char *s1); + int ParseUnits(char *cunit, int *chflag, CoordUnit *unit); + int ParsePrec(CoordUnit units, char *cprec, int longflag); + diff --git a/sci-astronomy/montage/files/montage-4.1-fix_freetype_incude.patch b/sci-astronomy/montage/files/montage-4.1-fix_freetype_incude.patch new file mode 100644 index 000000000000..0b27c83784db --- /dev/null +++ b/sci-astronomy/montage/files/montage-4.1-fix_freetype_incude.patch @@ -0,0 +1,13 @@ +Author: Ole Streicher <olebole@debian.org> +Description: Fix freetype include path +--- a/util/Viewer/graphics.c ++++ b/util/Viewer/graphics.c +@@ -1,7 +1,7 @@ + #include <stdio.h> + #include <math.h> + #include <freetype2/ft2build.h> +-#include <freetype.h> ++#include FT_FREETYPE_H + + void labeled_curve (char *face_path, int fontsize, int showLine, + double *xcurve, double *ycurve, int npt, diff --git a/sci-astronomy/montage/files/montage-4.1-initdistdata.patch b/sci-astronomy/montage/files/montage-4.1-initdistdata.patch new file mode 100644 index 000000000000..7344bbebb122 --- /dev/null +++ b/sci-astronomy/montage/files/montage-4.1-initdistdata.patch @@ -0,0 +1,19 @@ +Author: Christoph Deil <Deil.Christoph@gmail.com> +Description: non-void function 'closefitsfile' should return a value + This is copied from macports. +Bug: https://trac.macports.org/ticket/41076 +Url: https://trac.macports.org/attachment/ticket/41076/patch-lib-src-two_plane_v1.1-initdistdata.c.diff +--- a/lib/src/two_plane_v1.1/initdistdata.c ++++ b/lib/src/two_plane_v1.1/initdistdata.c +@@ -33,9 +33,9 @@ + if (I_fits_return_status != 0) + { + fprintf(stderr, "Error closing file\n"); +- return; ++ return -1; + } +- return; ++ return 0; + } + + int initdata_byheader(char *fitsheader, DistCoeff *coeff) diff --git a/sci-astronomy/montage/files/montage-4.1-use_system_libs.patch b/sci-astronomy/montage/files/montage-4.1-use_system_libs.patch new file mode 100644 index 000000000000..4f4ff8d2d748 --- /dev/null +++ b/sci-astronomy/montage/files/montage-4.1-use_system_libs.patch @@ -0,0 +1,49 @@ +From: Sebastien Fabbro <bicatali@gentoo.org> +Date: Tue, 7 Jun 2016 18:25:12 +0000 +Subject: Use system libraries + +--- a/lib/src/Makefile ++++ b/lib/src/Makefile +@@ -1,5 +1,5 @@ + l: +- (cd cfitsio-3.25; ./configure; make; cp libcfitsio.a ../..; cp *.h ../../include) ++# (cd cfitsio-3.25; ./configure; make; cp libcfitsio.a ../..; cp *.h ../../include) + (cd cmd; make; make install) + (cd coord; make; make install) + (cd mtbl; make; make install) +@@ -7,25 +7,25 @@ l: + (cd boundaries; make; make install) + (cd pixbounds; make; make install) + (cd www; make; make install) +- (cd wcstools-3.8.7/libwcs; make; cp libwcs.a ../../..; cp *.h ../../../include) ++# (cd wcstools-3.8.7/libwcs; make; cp libwcs.a ../../..; cp *.h ../../../include) + (cd two_plane_v1.1; make; make install) + (cd lodepng_20140823; make; make install) +- (cd jpeg-8b; ./configure; make; cp .libs/libjpeg.a ../..; cp jpeglib.h jconfig.h jmorecfg.h ../../include) +- (cd freetype-2.5.4; ./configure --prefix=`pwd`/../../freetype --without-png; make; make install) ++# (cd jpeg-8b; ./configure; make; cp .libs/libjpeg.a ../..; cp jpeglib.h jconfig.h jmorecfg.h ../../include) ++# (cd freetype-2.5.4; ./configure --prefix=`pwd`/../../freetype --without-png; make; make install) + (cd ..; ranlib *.a) + chmod 644 ../include/* + + clean: + rm -rf ../include/* ../freetype ../*.a +- (cd cfitsio-3.25; make clean; rm -rf config.log config.cache config.status lib) ++# (cd cfitsio-3.25; make clean; rm -rf config.log config.cache config.status lib) + (cd cmd; make clean) + (cd coord; make clean) + (cd mtbl; make clean) + (cd svc; make clean) + (cd boundaries; make clean) + (cd pixbounds; make clean) +- (cd wcstools-3.8.7/libwcs; make clean) ++# (cd wcstools-3.8.7/libwcs; make clean) + (cd two_plane_v1.1; make clean) + (cd lodepng_20140823; make clean) +- (cd jpeg-8b; make clean) +- (cd freetype-2.5.4; make clean; rm -rf objs/libfreetype.la objs/.libs) ++# (cd jpeg-8b; make clean) ++# (cd freetype-2.5.4; make clean; rm -rf objs/libfreetype.la objs/.libs) +-- +2.8.3 + diff --git a/sci-astronomy/montage/files/montage-5.0-fix_freetype_incude.patch b/sci-astronomy/montage/files/montage-5.0-fix_freetype_incude.patch new file mode 100644 index 000000000000..42fd94950b84 --- /dev/null +++ b/sci-astronomy/montage/files/montage-5.0-fix_freetype_incude.patch @@ -0,0 +1,35 @@ +From: Ole Streicher <olebole@debian.org> +Date: Thu, 22 Dec 2016 14:24:44 +0100 +Subject: Fix freetype include path + +--- + MontageLib/Viewer/mViewer_graphics.c | 2 +- + util/Viewer/graphics.c | 2 +- + 2 files changed, 2 insertions(+), 2 deletions(-) + +diff --git a/MontageLib/Viewer/mViewer_graphics.c b/MontageLib/Viewer/mViewer_graphics.c +index 932ca5f..a50281d 100644 +--- a/MontageLib/Viewer/mViewer_graphics.c ++++ b/MontageLib/Viewer/mViewer_graphics.c +@@ -1,7 +1,7 @@ + #include <stdio.h> + #include <math.h> + #include <freetype2/ft2build.h> +-#include <freetype.h> ++#include FT_FREETYPE_H + + void mViewer_labeledCurve (char *face_path, int fontsize, int showLine, + double *xcurve, double *ycurve, int npt, +diff --git a/util/Viewer/graphics.c b/util/Viewer/graphics.c +index 6bb7d8d..f7a5215 100644 +--- a/util/Viewer/graphics.c ++++ b/util/Viewer/graphics.c +@@ -1,7 +1,7 @@ + #include <stdio.h> + #include <math.h> + #include <freetype2/ft2build.h> +-#include <freetype.h> ++#include FT_FREETYPE_H + + void labeled_curve (char *face_path, int fontsize, int showLine, + double *xcurve, double *ycurve, int npt, diff --git a/sci-astronomy/montage/metadata.xml b/sci-astronomy/montage/metadata.xml new file mode 100644 index 000000000000..54df42e3123b --- /dev/null +++ b/sci-astronomy/montage/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Montage is a toolkit for assembling astronomical images into custom mosaics. + It uses algorithms that preserve the calibration and positional (astrometric) + fidelity of the input images to deliver mosaics that meet user-specified + parameters of projection, coordinates, and spatial scale. It supports all + projections and coordinate systems in use in astronomy. + It contains independent modules for analyzing the geometry of images on the + sky, and for creating and managing mosaics; these modules are powerful tools + in their own right and have applicability outside mosaic production, in areas + such as data validation. +</longdescription> + <upstream> + <remote-id type="github">Caltech-IPAC/Montage</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/montage/montage-4.1.ebuild b/sci-astronomy/montage/montage-4.1.ebuild new file mode 100644 index 000000000000..41261e6c583c --- /dev/null +++ b/sci-astronomy/montage/montage-4.1.ebuild @@ -0,0 +1,65 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils toolchain-funcs + +MYPN=Montage + +DESCRIPTION="Toolkit for assembling FITS images into mosaics" +HOMEPAGE="http://montage.ipac.caltech.edu/" +SRC_URI="https://github.com/Caltech-IPAC/${MYPN}/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +SLOT="0" + +IUSE="doc mpi" + +RDEPEND=" + media-libs/freetype:2= + sci-astronomy/wcstools:0= + sci-libs/cfitsio:0= + virtual/jpeg:0 + mpi? ( virtual/mpi )" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}/${P}-fix_format_errors.patch" + "${FILESDIR}/${P}-initdistdata.patch" + "${FILESDIR}/${P}-fix_freetype_incude.patch" + "${FILESDIR}/${P}-use_system_libs.patch" +) + +S="${WORKDIR}/${MYPN}-${PV}" + +src_prepare() { + default + tc-export CC AR + + find . -name Makefile\* | xargs sed -i \ + -e "/^CC.*=/s:\(gcc\|cc\):$(tc-getCC):g" \ + -e "/^CFLAGS.*=/s:-g:${CFLAGS} $($(tc-getPKG_CONFIG) --cflags wcstools):g" \ + -e "s:-I../../lib/freetype/include :$($(tc-getPKG_CONFIG) --cflags freetype2):g" \ + -e 's:$(CC) -o:$(CC) $(LDFLAGS) -o:g' \ + -e "s:-lwcs:$($(tc-getPKG_CONFIG) --libs wcstools):g" \ + -e "s:-lcfitsio:$($(tc-getPKG_CONFIG) --libs cfitsio):g" \ + -e 's:-lnsl::g' \ + -e "s:ar q:$(tc-getAR) q:g" || die + + if use mpi; then + sed -e 's:# MPICC:MPICC:' \ + -e 's:# BINS:BINS:' \ + -i Montage/Makefile.* || die + fi +} + +src_install () { + dobin bin/* + dodoc README* ChangeHistory + if use doc; then + insinto /usr/share/doc/${PF} + doins -r man/* + fi +} diff --git a/sci-astronomy/montage/montage-5.0.ebuild b/sci-astronomy/montage/montage-5.0.ebuild new file mode 100644 index 000000000000..91e67534e2fc --- /dev/null +++ b/sci-astronomy/montage/montage-5.0.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils toolchain-funcs + +MYPN=Montage + +DESCRIPTION="Toolkit for assembling FITS images into mosaics" +HOMEPAGE="http://montage.ipac.caltech.edu/" +SRC_URI="http://montage.ipac.caltech.edu/download/${MYPN}_v${PV}.tar.gz" + +LICENSE="BSD GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +SLOT="0" + +IUSE="doc mpi" + +RDEPEND=" + media-libs/freetype:2= + sci-astronomy/wcstools:0= + sci-libs/cfitsio:0= + virtual/jpeg:0 + mpi? ( virtual/mpi )" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-4.1-fix_format_errors.patch + "${FILESDIR}"/${PN}-4.1-initdistdata.patch + "${FILESDIR}"/${PN}-5.0-fix_freetype_incude.patch +) + +S="${WORKDIR}/${MYPN}" + +src_prepare() { + default + sed -e '/cfitsio/d' \ + -e '/wcssubs/d' \ + -e '/jpeg/d' \ + -e '/freetype/d' \ + -i lib/src/Makefile || die + + tc-export CC AR + + find . -name Makefile\* | xargs sed -i \ + -e "/^CC.*=/s:\(gcc\|cc\):$(tc-getCC):g" \ + -e "/^CFLAGS.*=/s:-g:${CFLAGS} $($(tc-getPKG_CONFIG) --cflags wcstools):g" \ + -e "s:-I../../lib/freetype/include :$($(tc-getPKG_CONFIG) --cflags freetype2):g" \ + -e 's:$(CC) -o:$(CC) $(LDFLAGS) -o:g' \ + -e "s:-lwcs:$($(tc-getPKG_CONFIG) --libs wcstools):g" \ + -e "s:-lcfitsio:$($(tc-getPKG_CONFIG) --libs cfitsio):g" \ + -e 's:-lnsl::g' \ + -e "s:ar q:$(tc-getAR) q:g" || die + + if use mpi; then + sed -e 's:# MPICC:MPICC:' \ + -e 's:# BINS:BINS:' \ + -i Montage/Makefile.* || die + fi +} + +src_install () { + dobin bin/* + dodoc README* ChangeHistory + use doc && dodoc -r man/* +} diff --git a/sci-astronomy/pal/Manifest b/sci-astronomy/pal/Manifest new file mode 100644 index 000000000000..15287674ba7d --- /dev/null +++ b/sci-astronomy/pal/Manifest @@ -0,0 +1,3 @@ +DIST pal-0.9.7.tar.gz 1220443 SHA256 7151aa05c2e2456394cae2043feb96e64d779286fb31a27ff11ec3dd66021286 SHA512 d3f13e7ff321500acc71198240392fe9a3304c4142cf5b1f1c3950ddb1351dddac8565ef27b1c724d608cc1053d15647c777c4d0dc466a99a1b08b64e62ec37b WHIRLPOOL e6d9986e43e91f35ee47e6586d3595c62f12d4dabb54f3e9adb6d524fcf075e54e92c6e985005bd3c892a55fbcf469a7a49f0e7672e0923ae2b6f1a321b65c15 +EBUILD pal-0.9.7.ebuild 770 SHA256 4164b86edd9ea78da2972c83706ae50a2aba36f245c5d40b4052bc8f4cf52cae SHA512 71ef9e791db7a8c5bd137b3e363d17f243fc8d09f72cfe4da97d0fa21f4d87dce9a2518a27b43b28ada57593cb817e8ad3d4881b0c73f07ce1723ee028d03bca WHIRLPOOL d3a3da6dd27b73e28018360a5f8bab7d1e7f50e4122143da434af6428e36bdfe1219921279c31d452f78d7203b76190c3b5e1452fe8f004c8b91488dad3f8335 +MISC metadata.xml 641 SHA256 d3b80250ffa360a07327cccdcd452a30962003b6649fa7c509b762fc57075660 SHA512 30901b566b997f270d805e251b2beae284261ff30e8d0725abe6233ce082dc8723d59aa72157073636837573621db4823c9504c0caf8e8ae6084a03b0c3d9561 WHIRLPOOL 26b30473de92f977ef90a45ff602ce55a8747095f890aa49f8e4df9cb36891847d47c9309707c78d2efa36f8ffbafd9d70b9217e3f8e1ab9131c5b246e90bbf0 diff --git a/sci-astronomy/pal/metadata.xml b/sci-astronomy/pal/metadata.xml new file mode 100644 index 000000000000..9f20e974544a --- /dev/null +++ b/sci-astronomy/pal/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + The Positional Astronomy Library is a collection of code designed + to aid in replacing the SLA library with code from NOVAS and + ERFA. Where possible the API is similar to the C SLA API except + for the use of a "pal" prefix. + </longdescription> + <upstream> + <remote-id type="github">Starlink/pal</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/pal/pal-0.9.7.ebuild b/sci-astronomy/pal/pal-0.9.7.ebuild new file mode 100644 index 000000000000..c165f47d600a --- /dev/null +++ b/sci-astronomy/pal/pal-0.9.7.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils + +DESCRIPTION="Positional Astronomy Library" +HOMEPAGE="https://github.com/Starlink/pal" +SRC_URI="https://github.com/Starlink/${PN}/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" +RDEPEND="sci-astronomy/erfa:=" +DEPEND="${RDEPEND}" + +src_configure() { + econf --without-starlink \ + --without-stardocs \ + --with-erfa \ + $(use_enable static-libs static) +} + +src_install() { + default + # remove cruft from non-fhs complient + rm -r "${ED}"usr/share/pal || die + rm -r "${ED}"usr/{docs,manifests,news} || die + use static-libs || prune_libtool_files --all +} diff --git a/sci-astronomy/predict/Manifest b/sci-astronomy/predict/Manifest new file mode 100644 index 000000000000..4a1ecedb89ba --- /dev/null +++ b/sci-astronomy/predict/Manifest @@ -0,0 +1,8 @@ +AUX predict-2.2.3-earthtrack.patch 1175 SHA256 d43fe03b11b472fe6818cba1e0b27329c99b3c4eadba585c75434aa122109aab SHA512 908d5b323606d2655787fb50f456fba894b87398bc55298d9ce99d065b6a7625a3c564a0a047011d83a31af640f3b0f8a1b38e467ec7017159601bb9bc237fd3 WHIRLPOOL 72f39cbf3c9018f8089548a720e87b4937b31862a27949ceea0ef21e8edb01200621e7b59c494b96a788cb4aac9936dff8c1dd9fd80b5997bed842629d5391ea +AUX predict-update 4039 SHA256 83dbf5f5e08f7d017391f7cfa7a30730f8930dec195dfa60bcd075188275d892 SHA512 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4db3c65a3069083bceca5d2d22afc60f61dbc87e2b3a69357b807b61d6eb16506e6bf5c5369c2c9af52c6bb745cc9e380bd7c3ba6c23a8bb4d70285b8def455b WHIRLPOOL 06c3ab5a5f56d251982d6927484855dc065e8a0f38d7bd0c53b59b2e4781061349d310f4c780a3c0b8a5cd0e93ea2d3a0857be841ae329720fce15721ebdc206 +MISC metadata.xml 836 SHA256 c536f704b5eb00528fe4373b6074b42e6aaf6067ede2719bc713350d50863ed9 SHA512 7e67a924a0b385cb051848bd1dd73d6a93ae60d13a10db785e96ead08df289137f06c67f17d519055b85aa228c1eca79db6da97494a532759c7c06c95e9c51d8 WHIRLPOOL 9564968d7c823e90cdcaa088152256a5c596430fadc689cbdf54c070679948bdd7f7aad35853ad9397ec73311ffd607d303245b73a971f5628e6c4b5f7bba9fb diff --git a/sci-astronomy/predict/files/predict-2.2.3-earthtrack.patch b/sci-astronomy/predict/files/predict-2.2.3-earthtrack.patch new file mode 100644 index 000000000000..65f18bf9512d --- /dev/null +++ b/sci-astronomy/predict/files/predict-2.2.3-earthtrack.patch @@ -0,0 +1,27 @@ +diff -Nur a/clients/earthtrack/earthtrack.c b/clients/earthtrack/earthtrack.c +--- a/clients/earthtrack/earthtrack.c 2013-06-08 20:03:55.629967192 +0200 ++++ b/clients/earthtrack/earthtrack.c 2013-06-08 20:05:15.559966743 +0200 +@@ -495,11 +495,11 @@ + + fprintf(fd,"marker_file=%s\n",markerfile); + fprintf(fd,"arc_file=%s\n",greatarcfile); +- fprintf(fd,"marker_font=/usr/local/share/xplanet/fonts/FreeMonoBold.ttf\n"); +- fprintf(fd,"\n## Your \"/usr/local/share/xplanet/config/default\" configuration file follows:\n\n"); ++ fprintf(fd,"marker_font=/usr/share/xplanet/fonts/FreeMonoBold.ttf\n"); ++ fprintf(fd,"\n## Your \"/usr/share/xplanet/config/default\" configuration file follows:\n\n"); + fclose(fd); + +- x=AppendFile("/usr/local/share/xplanet/config/default",configfile); ++ x=AppendFile("/usr/share/xplanet/config/default",configfile); + + if (x==1) + { +@@ -509,7 +509,7 @@ + + if (x==2) + { +- fprintf(stderr,"%c*** Error: Could not read \"/usr/local/share/xplanet/config/default\"\nIs xplanet installed?\n\n",7); ++ fprintf(stderr,"%c*** Error: Could not read \"/usr/share/xplanet/config/default\"\nIs xplanet installed?\n\n",7); + exit(-1); + } + } diff --git a/sci-astronomy/predict/files/predict-update b/sci-astronomy/predict/files/predict-update new file mode 100644 index 000000000000..b0634e148e46 --- /dev/null +++ b/sci-astronomy/predict/files/predict-update @@ -0,0 +1,92 @@ +#!/bin/sh +oldpwd=$PWD + +if [ ! -f ~/.predict/predict.tle ]; then + mkdir -p ~/.predict + cd ~/.predict + cat > predict.tle << EOF +OSCAR-10 +1 14129U 02217.21791401 .00000442 00000-0 00000-0 0 7 +2 14129 25.6686 197.8739 6086930 273.5039 23.0795 2.05866525116000 +OSCAR-11 +1 14781U 02217.20425383 .00001813 00000-0 00000-0 0 6 +2 14781 98.0880 185.1059 0010359 119.2373 240.9876 14.76997913987094 +OSCAR-14 +1 20437U 02217.20572416 .00000181 00000-0 00000-0 0 8 +2 20437 98.3009 264.9286 0011799 68.5863 291.6580 14.31121869654267 +PACSAT +1 20439U 02217.25154490 .00000231 00000-0 00000-0 0 9 +2 20439 98.3472 275.4922 0012032 74.6777 285.5743 14.31332429654304 +LUSAT +1 20442U 02216.75520291 .00000242 00000-0 00000-0 0 5 +2 20442 98.3779 280.4632 0012985 73.9191 286.3409 14.31575156654338 +OSCAR-20 +1 20480U 02217.54003808 -.00000027 00000-0 00000-0 0 7 +2 20480 99.0206 212.5786 0540948 90.2870 276.0202 12.83318863585245 +OSCAR-22 +1 21575U 02216.97001758 .00000422 00000-0 00000-0 0 9 +2 21575 98.1264 214.2386 0008207 17.4055 342.7413 14.38915947579867 +OSCAR-23 +1 22077U 02216.94266766 -.00000037 00000-0 00000-0 0 9 +2 22077 66.0844 179.5905 0009538 319.0308 40.9993 12.86398497468888 +OSCAR-25 +1 22828U 02217.51170770 .00000176 00000-0 00000-0 0 9 +2 22828 98.2949 253.2889 0010744 97.6953 262.5454 14.29395258429974 +ITAMSAT +1 22826U 02216.71294910 .00000212 00000-0 00000-0 0 2 +2 22826 98.2981 252.2691 0009565 119.2021 241.0116 14.29035332461667 +OSCAR-27 +1 22825U 02217.14273416 .00000182 00000-0 00000-0 0 3 +2 22825 98.2952 251.6595 0009305 119.9116 240.3013 14.28824165461683 +OSCAR-29 +1 24278U 02216.92953700 -.00000035 00000-0 00000-0 0 1 +2 24278 98.5168 30.2010 0351470 9.0561 351.6706 13.52846361294584 +OSCAR-36 +1 25693U 02217.47022698 .00000460 00000-0 00000-0 0 8 +2 25693 64.5605 253.8004 0008708 253.5019 106.5150 14.74585281177168 +OSCAR-40 +1 26609U 02217.05030362 -.00000251 00000-0 00000-0 0 6 +2 26609 7.5635 101.4360 7924755 75.7827 352.4675 1.25596086 8104 +RS-12/13 +1 21089U 02216.81449027 .00000082 00000-0 00000-0 0 9 +2 21089 82.9235 328.1138 0030158 114.6154 245.8150 13.74373061576622 +RS-15 +1 23439U 02216.86493965 -.00000037 00000-0 00000-0 0 6 +2 23439 64.8185 1.1847 0152424 152.9684 207.9281 11.27546726313309 +NOAA-12 +1 21263U 02216.96410173 .00000410 00000-0 00000-0 0 4 +2 21263 98.6066 205.1774 0011736 236.4413 123.5645 14.24842312583078 +NOAA-14 +1 23455U 02216.94655308 .00000224 00000-0 00000-0 0 1 +2 23455 99.1906 225.2382 0010223 66.1025 294.1215 14.13170722391563 +NOAA-15 +1 25338U 02216.96832533 .00000312 00000-0 00000-0 0 0 +2 25338 98.5657 239.3255 0010503 167.6220 192.5219 14.24094451219673 +UARS +1 21701U 02217.09598012 .00001106 00000-0 00000-0 0 8 +2 21701 56.9808 110.9304 0004474 115.3921 244.7510 15.02171395596038 +HUBBLE +1 20580U 02217.09786941 .00002710 00000-0 00000-0 0 4 +2 20580 28.4663 239.6798 0003524 339.3283 57.0940 14.96472945473016 +ISS +1 25544U 02217.52476852 .00025143 00000-0 00000-0 0 9 +2 25544 51.6355 165.2615 0018093 106.6267 56.5198 15.57209040211722 +PCSAT +1 26931U 02217.22743486 .00000269 00000-0 00000-0 0 9 +2 26931 67.0531 43.5764 0007786 258.8522 101.1704 14.28921812 44150 +STARSHINE 3 +1 26929U 02216.67548843 .00042169 00000-0 00000-0 0 9 +2 26929 67.0426 246.5544 0011326 237.9129 122.0981 15.57367567 47636 +EOF +fi + +mkdir /tmp/predict-$$ || exit 1 +cd /tmp/predict-$$ + +wget -qc www.celestrak.com/NORAD/elements/amateur.txt -O ./amateur.txt +wget -qc www.celestrak.com/NORAD/elements/visual.txt -O ./visual.txt +wget -qc www.celestrak.com/NORAD/elements/weather.txt -O ./weather.txt +predict -u ./amateur.txt ./visual.txt ./weather.txt + +cd ${oldpwd} +rm -fr /tmp/predict-$$ diff --git a/sci-astronomy/predict/metadata.xml b/sci-astronomy/predict/metadata.xml new file mode 100644 index 000000000000..f5e4e6e1fe77 --- /dev/null +++ b/sci-astronomy/predict/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Predict is a satellite tracking program. It is probably mostly of interest + to users of amateur satellites, but includes support for optionally + announcing azimuth and elevation to help in manual antenna pointing, + or optical observation of satellites. +</longdescription> +<use> + <flag name="xforms">Add a "map" client which uses the + <pkg>x11-libs/xforms</pkg> library for its GUI</flag> + <flag name="xplanet">Project predict data onto world maps generated by + <pkg>x11-misc/xplanet</pkg> / <pkg>x11-misc/xearth</pkg></flag> +</use> +</pkgmetadata> diff --git a/sci-astronomy/predict/predict-2.2.3-r2.ebuild b/sci-astronomy/predict/predict-2.2.3-r2.ebuild new file mode 100644 index 000000000000..bca4d52f5976 --- /dev/null +++ b/sci-astronomy/predict/predict-2.2.3-r2.ebuild @@ -0,0 +1,207 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools toolchain-funcs + +DEB_P=${PN}_${PV} +DEB_PR=3.1 + +DESCRIPTION="Satellite tracking and orbital prediction" +HOMEPAGE="http://www.qsl.net/kd2bd/predict.html" +SRC_URI="mirror://debian/pool/main/${PN:0:1}/${PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${PN:0:1}/${PN}/${DEB_P}-${DEB_PR}.diff.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="doc gtk nls xforms xplanet" +KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux" + +RDEPEND="sys-libs/ncurses:0= + gtk? ( x11-libs/gtk+:2 ) + xforms? ( x11-libs/xforms ) + xplanet? ( x11-misc/xplanet[truetype] )" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}"/"${P}"-earthtrack.patch + "${WORKDIR}"/${DEB_P}-${DEB_PR}.diff +) + +src_prepare() { + default + sed -i -e 's:predict\(.*\)/:predict-2.2.3\1/:g' \ + debian/patches/140*.diff || die + sed -i -e 's:\(a\|b\)/:predict-2.2.3/:g' \ + debian/patches/180*.diff || die + eapply debian/patches/. + # fix some further array out of bounds errors + sed -i -e "s/satname\[ 26/satname\[ 25/g" \ + clients/gsat-1.1.0/src/db.c || die + sed -i -e "s/satname\[ 26/satname\[ 25/g" \ + clients/gsat-1.1.0/src/comms.c || die + sed -i -e "s/output\[20\];/output[21];/" \ + utils/moontracker/moontracker.c || die + # fix underlinking + sed -i -e '/AC_OUTPUT/i \ +AC_SEARCH_LIBS([cos], [m]) \ +AC_SEARCH_LIBS([dlclose], [dl])' \ + -e 's/AM_CONFIG_HEADER/AC_CONFIG_HEADERS/' \ + -e 's/configure.in/configure.ac/' \ + clients/gsat-1.1.0/configure.in || die + + mv clients/gsat-1.1.0/configure.{in,ac} || die + + sed -i \ + -e 's/gcc/$(CC) $(CFLAGS) $(LDFLAGS)/g' \ + -e 's/-o/-lm -o/g' \ + clients/gsat-1.1.0/plugins/Makefile || die + + # fix the hardcoded /usr/lib + PRED_DIR=/usr/$(get_libdir)/${PN} + sed -i -e "s:/usr/lib/${PN}:${EPREFIX}/${PRED_DIR}:g" \ + predict.h vocalizer/vocalizer.c || die + + sed -i -e "s:/usr/lib:${EPREFIX}/usr/$(get_libdir):g" \ + clients/gsat-1.1.0/src/globals.h || die + + if use gtk; then + cd "${S}"/clients/gsat-* || die + rm config.sub missing || die + eautoreconf + fi +} + +src_configure() { + if use gtk; then + cd "${S}"/clients/gsat-* || die + econf $(use_enable nls) + fi +} + +src_compile() { + # predict uses a ncurses based configure script + # this is what it does if it was bash based ;) + + local COMPILER="$(tc-getCC) ${CFLAGS} ${LDFLAGS}" + einfo "Compiling predict" + ${COMPILER} predict.c -lm $($(tc-getPKG_CONFIG) --libs ncurses) -lpthread \ + -o predict || die "failed predict" + einfo "Compiling predict-g1yyh" + ${COMPILER} predict-g1yyh.c -lm $($(tc-getPKG_CONFIG) --libs ncurses) -lpthread -lmenu \ + -o predict-g1yyh || die "failed predict-g1yyh" + einfo "Compiling vocalizer" + ${COMPILER} vocalizer/vocalizer.c \ + -o vocalizer/vocalizer || die "failed vocalizer" + local c + for c in fodtrack geosat moontracker; do + einfo "Compiling ${c}" + cd "${S}"/utils/${c}* || die + ${COMPILER} ${c}.c -lm -o ${c} || die "failed ${c}" + done + einfo "Compiling kep_reload" + cd "${S}"/clients/kep_reload + ${COMPILER} kep_reload.c \ + -o kep_reload || die "failed kep_reload" + + if use xplanet; then + einfo "Compiling earthtrack" + cd "${S}"/clients/earthtrack || die + ${COMPILER} earthtrack.c \ + -lm -o earthtrack || die "failed earthtrack" + fi + + if use xforms; then + einfo "Compiling map" + cd "${S}"/clients/map || die + ${COMPILER} map.c map_cb.c map_main.c -lforms -lX11 -lm \ + -o map || die "Failed compiling map" + fi + + if use gtk; then + einfo "Compiling gsat" + cd "${S}"/clients/gsat-* || die + emake + emake -C plugins + fi +} + +src_install() { + dobin predict predict-g1yyh "${FILESDIR}"/predict-update + dodoc CHANGES CREDITS HISTORY README NEWS debian/README.Debian + doman docs/man/predict.1 + newman debian/predict-g1yyh.man predict-g1yyh.1 + insinto ${PRED_DIR}/default + doins default/predict.* + use doc && dodoc docs/pdf/predict.pdf + + cd "${S}"/vocalizer || die + dobin vocalizer + dosym ../../../bin/vocalizer ${PRED_DIR}/vocalizer/vocalizer + insinto ${PRED_DIR}/vocalizer + doins *.wav + + cd "${S}"/clients/kep_reload || die + dobin kep_reload + newdoc README README.kep_reload + doman "${S}"/debian/kep_reload.1 + + cd "${S}"/utils/fodtrack-0.1 || die + insinto /etc + doins fodtrack.conf + doman fodtrack.conf.5 fodtrack.8 + dobin fodtrack + newdoc README README.fodtrack + + cd "${S}"/utils/geosat || die + dobin geosat + newdoc README README.geosa + newman "${S}"/debian/geosat.man geosat.1 + + cd "${S}"/utils/moontracker || die + dobin moontracker + newdoc README README.moontracker + doman "${S}"/debian/moontracker.1 + + if use xplanet; then + cd "${S}"/clients/earthtrack || die + ln -s earthtrack earthtrack2 || die + dobin earthtrack earthtrack2 + newdoc README README.earthtrack + doman "${S}"/debian/earthtrack.1 + fi + + if use xforms; then + cd "${S}"/clients/map || die + newbin map predict-map + newdoc CHANGES CHANGES.map + newdoc README README.map + doman "${S}"/debian/predict-map.1 + fi + + if use gtk; then + cd "${S}"/clients/gsat-* || die + exeinto /usr/$(get_libdir)/gsat/plugins + doexe plugins/radio_{FT736,FT847,ICR10,print,test} plugins/rotor_{print,pictrack} + dobin src/gsat + doman "${S}"/debian/gsat.1 + local i + for i in AUTHORS ChangeLog NEWS README Plugin_API; do + newdoc ${i} ${i}.gsat + done + fi +} + +pkg_postinst() { + einfo "To use the clients the following line will" + einfo "have to be inserted into /etc/services" + einfo "predict 1210/udp" + einfo "The port can be changed to anything" + einfo "the name predict is what is needed to work" + einfo "after that is set run 'predict -s'" + einfo "" + einfo "To get list of satellites run 'predict-update'" + einfo "before running predict this script will also update" + einfo "the list of satellites so they are up to date." +} diff --git a/sci-astronomy/psfex/Manifest b/sci-astronomy/psfex/Manifest new file mode 100644 index 000000000000..4e1d4a485554 --- /dev/null +++ b/sci-astronomy/psfex/Manifest @@ -0,0 +1,7 @@ +AUX psfex-3.17.1-have-mmap.patch 1406 SHA256 5fbd289f5659f1ebe0856832dfcfee5ef6032bad83b6f7df36efc1a8720ad3b5 SHA512 b944a9c75b379932faa0af70d6e215ccbe113b2b063939d8a21810a1c03deecdb0c5a2947b4ebdf4c1396426bd2382e3014e906ac68ef17962670e3705d95a45 WHIRLPOOL 74d47decc00b6e1e12d4a2973b3baaa98378795c3e56ffc5c408d320658ac591ff82d099ee34b78c83ec1ff1f2b348cff9f1822edc10fb68a6b13d2f0579db4c +AUX psfex-3.17.1-plplot510.patch 5697 SHA256 44cb242e1d3cb24e6d8ac44b7f54e375dfc68588be1d869407f4bb249674e808 SHA512 269457b0592c6458f36c459ca3721df529d8f9ff06e0ed651d4151224bba537e4663a0eb2afb3c55e6e921c56c643fa77f9cb0b39528ae3c09894cc944446328 WHIRLPOOL e12ace2080cb740f81a9e590955182a7a64ab5b62c4d99048d0ed7e6579bc30e691f91d54fd2016f88cb4ca61e8dce9e8e49c1f94a593e25a5bf166c456c11af +AUX psfex-3.17.1-sigbus.patch 736 SHA256 6dbece30c6d805cebc9211648c08b5b5013f8c2dfc3c5d91ddb6e80c337a5d28 SHA512 bca9ad7a758294812761b9f860cc40cd931a5753f248a4682858e9fd1b917a485d5e0b891e17b90c96b54d0e7f05d1aa2e2e7e6143fdc52ec57d4a609c9f4df6 WHIRLPOOL 7cf8f0a365dca534b94557c2897d2f848f44def25e18549060646f4b8e3e5fcc5460c65bc424286037c8d5caafc86ca23fc2aed6fbb2e34addcc8d6ba47fc9a4 +DIST psfex-3.17.1.tar.gz 2366370 SHA256 53f1b449ab7da7e6e0a989c41b82885f52c8f08270ceb4378bb1ec7ef754af89 SHA512 eb562372dd75593a111c23698b0c00ce050547051803a741ac771ca346d13a0de1e478b055581619a9fa2bf6fa374915ca685cfcf1c4162271b6aa44303e6e58 WHIRLPOOL 3245b2b8c5a85e5f0a88b0c11aff07ce10ced0682890b786d0b092285d46fedf72bf15e87dd3ef6f6296527bc632e12c5162fa0b3b660b5b8bff0b30f38510c9 +EBUILD psfex-3.17.1.ebuild 1616 SHA256 03da6514fa4eb91601f8d04422475e5b10f6f9cb4b1852db5bdb9841714c56f9 SHA512 1517b4777174f2ad3274e3a67e496d180fa0b0fb72cedee3db4bb9e36ed109d21a621f23fe49051afb4cce3a91a2bcb7cbae4997c35d5d430f884977ba5a18b4 WHIRLPOOL 73b4ab23588f6c70acf975765008cacf566ab89157da3e97d46106cb3c9efc08747f72ae5055a485d95869fb04c6c1d5376dec0d89bbc572986d0ce7489d9d89 +MISC ChangeLog 563 SHA256 9a077db8e2853d6717d385b82ac5d08b2538a6e44e65ed0e63717f24b6a4a21d SHA512 f7b88cbd22aa2d96bfbc166b1ea3df1d021d7cf127af83627784307b2e122bc8e6d3615261bf708cad020f7ca6982e8c667c4430221ea1415fbaad036d554a63 WHIRLPOOL 257770ff14ba31f6b135b18a053c8227edfed05b0033bf56d7b402dde9ed88413db866dcaf57ca14c0326339414dab5617a407ec17a9cbdc4073e5bbaa9ce9c2 +MISC metadata.xml 720 SHA256 1bce61bb7b3074a7732fe29d9ad86235f2397f7be90c746a844b97216656524c SHA512 7cc57534487d05bed6729a0c2462fb9ff14402145de76071af155b9451ead40cd276cb5b682fa542085066b35eed6dfefa0e73f9a20a788a5f636f38581efa9b WHIRLPOOL 2725cc2aa00cf8ce7f75cfc63615a8d2e9753ae39f1638c939d42ade3392136631c8d4b93a4491efb04a76565ac733dc111a33cce2e304b6a6bdc11b54a62a56 diff --git a/sci-astronomy/psfex/files/psfex-3.17.1-have-mmap.patch b/sci-astronomy/psfex/files/psfex-3.17.1-have-mmap.patch new file mode 100644 index 000000000000..1b6565089849 --- /dev/null +++ b/sci-astronomy/psfex/files/psfex-3.17.1-have-mmap.patch @@ -0,0 +1,55 @@ +Author: Justin Pryzby <justinpryzby@users.sf.net> +Description: (guess) Use mmap only if it exists. +--- a/src/fits/fitsbody.c ++++ b/src/fits/fitsbody.c +@@ -64,9 +64,12 @@ + ***/ + PIXTYPE *alloc_body(tabstruct *tab, void (*func)(PIXTYPE *ptr, int npix)) + { ++#ifdef HAVE_MMAP + FILE *file; + PIXTYPE *buffer; +- size_t npix, size, sizeleft, spoonful; ++ size_t sizeleft, spoonful; ++#endif ++ size_t npix, size; + + if (!body_ramflag) + { +@@ -87,7 +90,9 @@ + /* Decide if the data will go in physical memory or on swap-space */ + npix = tab->tabsize/tab->bytepix; + size = npix*sizeof(PIXTYPE); ++#if !HAVE_MMAP + if (size < body_ramleft) ++#endif + { + /*-- There should be enough RAM left: try to do a malloc() */ + if ((tab->bodybuf = malloc(size))) +@@ -105,6 +110,7 @@ + tab->bodybuf = NULL; + } + ++#if HAVE_MMAP + if (size < body_vramleft) + { + /*-- Convert and copy the data to a swap file, and mmap() it */ +@@ -144,6 +150,7 @@ + return NULL; + return (PIXTYPE *)tab->bodybuf; + } ++#endif + + /* If no memory left at all: forget it! */ + return NULL; +@@ -270,8 +277,10 @@ + size = (tab->tabsize/tab->bytepix)*sizeof(PIXTYPE); + if (tab->swapflag) + { ++#if HAVE_MMAP + if (munmap(tab->bodybuf, size)) + warning("Can't unmap ", tab->cat->filename); ++#endif + tab->swapflag = 0; + tab->bodybuf = NULL; + body_vramleft += size; diff --git a/sci-astronomy/psfex/files/psfex-3.17.1-plplot510.patch b/sci-astronomy/psfex/files/psfex-3.17.1-plplot510.patch new file mode 100644 index 000000000000..4dd5805a9367 --- /dev/null +++ b/sci-astronomy/psfex/files/psfex-3.17.1-plplot510.patch @@ -0,0 +1,221 @@ +Author: Ole Streicher <olebole@debian.org> +Description: Replace deprecated plwid() calls by plwidth(). +--- a/src/cplot.c ++++ b/src/cplot.c +@@ -527,7 +527,7 @@ + + /* Draw meridians */ + plschr(0.0, 0.33); +- plwid(0); ++ plwidth(0.0); + pllsty(2); + xmd = xmu = xdo = -0.5; + ymd = ymu = ydo = -0.5; +@@ -709,14 +709,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: FWHM map", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -830,7 +830,7 @@ + plFree2dGrid(fwhm, nsnap2, nsnap2); + } + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + +@@ -941,14 +941,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: ellipticity map", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -1062,7 +1062,7 @@ + plFree2dGrid(ellip, nsnap2, nsnap2); + } + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + +@@ -1159,14 +1159,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: map of Moffat fit residuals", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -1278,7 +1278,7 @@ + plFree2dGrid(resi, nsnap2, nsnap2); + } + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + +@@ -1378,14 +1378,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: PSF asymmetry map", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -1497,7 +1497,7 @@ + plFree2dGrid(resi, nsnap2, nsnap2); + } + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + +@@ -1592,14 +1592,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: source count map", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -1666,7 +1666,7 @@ + clevel, CPLOT_NSHADES, 1, 0, 0, plfill, 0, distort_map, wcsptr); + plFree2dGrid(count, nsnap2, nsnap2); + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + +@@ -1751,14 +1751,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: source count fraction map", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -1826,7 +1826,7 @@ + clevel, CPLOT_NSHADES, 1, 0, 0, plfill, 0, distort_map, wcsptr); + plFree2dGrid(count, nsnap2, nsnap2); + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + +@@ -1911,14 +1911,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: #gx#u2#d/d.o.f. map", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -1985,7 +1985,7 @@ + clevel, CPLOT_NSHADES, 1, 0, 0, plfill, 0, distort_map, wcsptr); + plFree2dGrid(count, nsnap2, nsnap2); + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + +@@ -2070,14 +2070,14 @@ + ymin = 0.5; + ymax = 100.5; + lwid = plotaaflag? ((CPLOT_AAFAC+1)/2) : 1; +- plwid(lwid); ++ plwidth((double)lwid); + plfont(2); + plcol0(15); + plenv((PLFLT)xmin, (PLFLT)xmax, (PLFLT)ymin, (PLFLT)ymax, 1, -1); + sprintf(str, "#uField %.24s: map of residuals", field->rtcatname); + plschr(0.0, 1.0); + pllab("","", str); +- plwid(0); ++ plwidth(0.0); + plcol0(7); + cplot_drawloccoordgrid(wcsout, xmin, xmax, ymin, ymax); + +@@ -2144,7 +2144,7 @@ + clevel, CPLOT_NSHADES, 1, 0, 0, plfill, 0, distort_map, wcsptr); + plFree2dGrid(count, nsnap2, nsnap2); + plcol0(7); +- plwid(lwid); ++ plwidth((double)lwid); + cplot_drawbounds(wcs, wcsout); + } + diff --git a/sci-astronomy/psfex/files/psfex-3.17.1-sigbus.patch b/sci-astronomy/psfex/files/psfex-3.17.1-sigbus.patch new file mode 100644 index 000000000000..2796f63884e3 --- /dev/null +++ b/sci-astronomy/psfex/files/psfex-3.17.1-sigbus.patch @@ -0,0 +1,26 @@ +Author: Justin Pryzby <justinpryzby@users.sf.net> +Description: (guess) Handle the "sigbus" case only if it exists +--- a/src/fits/fitscleanup.c ++++ b/src/fits/fitscleanup.c +@@ -164,7 +164,9 @@ + /* Catch CTRL-Cs */ + signal(SIGINT, signal_function); + /* Catch bus errors */ ++#ifdef SIGBUS // TODO: what if it is an enum? + signal(SIGBUS, signal_function); ++#endif + /* Catch segmentation faults */ + signal(SIGSEGV, signal_function); + /* Catch floating exceptions */ +@@ -195,9 +197,11 @@ + case SIGINT: + fprintf(stderr, "^C\n"); + exit(-1); ++#ifdef SIGBUS + case SIGBUS: + fprintf(stderr, "bus error\n"); + exit(-1); ++#endif + case SIGSEGV: + fprintf(stderr, "segmentation fault\n"); + exit(-1); diff --git a/sci-astronomy/psfex/metadata.xml b/sci-astronomy/psfex/metadata.xml new file mode 100644 index 000000000000..81a909fb6d5a --- /dev/null +++ b/sci-astronomy/psfex/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + PSFEx (“PSF Extractor”) extracts models of the Point Spread + Function (PSF) from FITS images processed with <pkg>sci-astronomy/sextractor</pkg>, and + measures the quality of images. The generated PSF models can be used + for model-fitting photometry or morphological analyses. +</longdescription> +<use> + <flag name="plplot">Build with <pkg>sci-libs/plplot</pkg> to allow diagnostic plots during processing</flag> +</use> +</pkgmetadata> diff --git a/sci-astronomy/psfex/psfex-3.17.1.ebuild b/sci-astronomy/psfex/psfex-3.17.1.ebuild new file mode 100644 index 000000000000..904072cc38fe --- /dev/null +++ b/sci-astronomy/psfex/psfex-3.17.1.ebuild @@ -0,0 +1,63 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +DESCRIPTION="Extracts models of the Point Spread Function from FITS images" +HOMEPAGE="http://www.astromatic.net/software/psfex" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" +IUSE="doc threads plplot" + +RDEPEND=" + sci-libs/atlas:0[lapack,threads=] + sci-libs/fftw:3.0 + plplot? ( sci-libs/plplot:= )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +PATCHES=( + "${FILESDIR}/${P}-have-mmap.patch" + "${FILESDIR}/${P}-plplot510.patch" + "${FILESDIR}/${P}-sigbus.patch" +) + +src_prepare() { + default + local mycblas=atlcblas myclapack=atlclapack + if use threads; then + [[ -e ${EPREFIX}/usr/$(get_libdir)/libptcblas.so ]] && \ + mycblas=ptcblas + [[ -e ${EPREFIX}/usr/$(get_libdir)/libptclapack.so ]] && + myclapack=ptclapack + fi + # fix the configure and not the acx_atlas.m4. the eautoreconf will + # produce a configure giving a wrong install Makefile target (to fix) + sed -e "s/-lcblas/-l${mycblas}/g" \ + -e "s/AC_CHECK_LIB(cblas/AC_CHECK_LIB(${mycblas}/g" \ + -e "s/-llapack/-l${myclapack}/g" \ + -e "s/\(lapack_lib=\).*/\1${myclapack}/g" \ + -e "s/AC_CHECK_LIB(lapack/AC_CHECK_LIB(${myclapack}/g" \ + -i acx_atlas.m4 || die + + # fix for newer plplot + sed -e 's/plplotd/plplot/g' -i acx_plplot.m4 || die + eautoreconf +} + +src_configure() { + econf \ + --with-atlas-incdir="${EPREFIX}/usr/include/atlas" \ + $(use_enable plplot) \ + $(use_enable threads) +} + +src_install () { + default + use doc && dodoc doc/* +} diff --git a/sci-astronomy/pyephem/Manifest b/sci-astronomy/pyephem/Manifest new file mode 100644 index 000000000000..6ec7daaf4039 --- /dev/null +++ b/sci-astronomy/pyephem/Manifest @@ -0,0 +1,7 @@ +DIST pyephem-3.7.5.3.tar.gz 735112 SHA256 cb0d7950d108aa5cbb1eb6e558086e98230de03ee1ede017a71701257b67eceb SHA512 a61b6a19c35c10ee9d4eba72cb0e6b9446076a3943be58dfd5e084bc9ab09dc70f2ee335ba5f0ef9d9d4d34a461bf4b9ddd57dae50d2e8a8f565d411e47f2908 WHIRLPOOL be28698df6214e769d03e74a67b353679a753723420e6a289b347b42c466c11253df9764f9e4e0fdda0424f4b62363b54fa58b520f45d480aae3a5883a84deae +DIST pyephem-3.7.6.0.tar.gz 739561 SHA256 143146da32a07a4cf9725b5656ba095d24978c22a0363414203e72c39bae52bd SHA512 c3013ef943c0e1e2c30bba6f72912efb100b4c8c45904b7d6d7ba73d8b741564793a6e538117eb88abb824c93c874e2c955de734418ebd2370888718a149c9a8 WHIRLPOOL de8b8a4c86004adb2400a52f22514e5a25752d8e31fe7adbdffd08efa598d8d8c72726398f0ea49dfe3dcc6372c83d2586043ed987be3492c697c2818a2616e8 +EBUILD pyephem-3.7.5.3.ebuild 1145 SHA256 ad1cb10172a6e2b7079be198ff34b99383339f213d859354e4d93575d6ed39d9 SHA512 1bb3dd5dd13736c2ae8660fc6874a5580b11df4c8ec7fbcda07eca4e38768af5b13a585d86efa111eed85c38369241f5a6ee0ce8e8b8116a7b893e2b43894085 WHIRLPOOL 716dd45cd8d04946e2d81a0422b2c4f232e4349b2ae640220edf547ad40a48785a9a3e22c51639c17f2a7cfcaacd323a8efea6e1dc3e6dcbf643ae057a29327b +EBUILD pyephem-3.7.6.0.ebuild 1155 SHA256 c64a38dba3d65d6e6d555759d9e628dec107d8ad6045a8f217c594dcfd42caea SHA512 e0850c6a9ba29e862038685c8774e08a1f9c517dea08372237fad153269988452f44ab242037a7cd73eb1bcc3404d2c2b81228023a98bdab21bf116ba4cf2532 WHIRLPOOL e61d8675c1144e037bcb57c8e8e69a6d40c030ac83415e59df43b014e8a67b7e9faf0a23d3d06c38d7e0d9a0ea2ad291e8e4c633334654decfc8283b523c7089 +MISC ChangeLog 2893 SHA256 b9bd6fd2238b8d4f305f9e3c1ca78e06b9adac8e2b2bd1f1d4bcd562ec75c164 SHA512 e527927d8c7464c16ac30917bbc9489baa35f2f4f0bb1d34ad2a6243d559db192493291c6809b2fbab099643de2efccfc265a255d2505cc54031d4a8c469ad42 WHIRLPOOL b428f08a2da44103c3e010d73d67818168fb29180f645f5620026f98d2ed56deda638fc7eacc686918c1358aa1bbd0247ab3f3a41b7746b950bd4499ae481f1b +MISC ChangeLog-2015 4483 SHA256 450e891e00f3efd69b10f3206a38f77f841aa6c877f966a1b85e4e19ac48cf7a SHA512 5fdefd1adddddf353a3f266cfd01e2a06ac846a33aea65c1185929652bd636fddb115f5d3285adfcd92a328675e82922bde8e460b0d3cae8ad94ea76a8b11fad WHIRLPOOL b9a34e2972738e1417be1b3b2db9d7786ac82388b50cef45697d175898fdb21602e3d30ffe691a34186d24b38b332b2e311892219cfb8f14771e33e5f81b2d56 +MISC metadata.xml 947 SHA256 05411981e1270d0ccc7012639f657f3fcfac0e5e309ffe522550b03f3c603ff3 SHA512 f41c27b07f211b09dd72e316d02c46206dea0ff368e2ad1a8d116df49a2ce2a74137b2647572e295bcde34792d4ee15fb2d3f9e1a883c6cb306f6ef2a43d5c53 WHIRLPOOL 97f25339e31b652ce0879ac5147d8c9e7923905f27835ea07fe33626e3fb3c5207a48c72894e775c03f30d7bad13a11a36287eea74d68c24f015559996cd2de5 diff --git a/sci-astronomy/pyephem/metadata.xml b/sci-astronomy/pyephem/metadata.xml new file mode 100644 index 000000000000..62f6a69d465d --- /dev/null +++ b/sci-astronomy/pyephem/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + PyEphem provides astronomical computations for the Python programming + language. Given a date and location on the Earth's surface, it can + compute the positions of the Sun and Moon, of the planets and their + moons, and of any asteroids, comets, or earth satellites whose orbital + elements the user can provide. Additional functions are provided to + compute the angular separation between two objects in the sky, to + determine the constellation in which an object lies, and to find the + times at which an object rises, transits, and sets on a particular + day. +</longdescription> +<upstream> + <remote-id type="pypi">pyephem</remote-id> +</upstream> +</pkgmetadata> diff --git a/sci-astronomy/pyephem/pyephem-3.7.5.3.ebuild b/sci-astronomy/pyephem/pyephem-3.7.5.3.ebuild new file mode 100644 index 000000000000..10c8bdb996b0 --- /dev/null +++ b/sci-astronomy/pyephem/pyephem-3.7.5.3.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit distutils-r1 + +DESCRIPTION="Astronomical routines for the python programming language" +HOMEPAGE="http://rhodesmill.org/pyephem/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="LGPL-3" +SLOT="0" +KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux" +IUSE="doc test" + +DEPEND=" + doc? ( dev-python/sphinx )" +RDEPEND="" + +src_prepare() { + # don't install rst files + sed -i -e "s:'doc/\*\.rst',::" setup.py || die + distutils-r1_src_prepare +} + +src_compile() { + distutils-r1_src_compile + if use doc; then + PYTHONPATH=. emake -C ephem/doc html + fi +} + +python_test() { + if [[ ${PYTHON_ABI} == "2.7" ]]; then + PYTHONPATH="$(ls -d ${BUILD_DIR}/lib*)" \ + ${EPYTHON} -m unittest discover -s src/ephem + else + PYTHONPATH="$(ls -d ${BUILD_DIR}/lib*)" \ + unit2 discover -s src/ephem + fi +} + +src_install() { + distutils-r1_src_install + use doc && dohtml -r ephem/doc/_build/html/* + + delete_tests() { + rm -r "${D}$(python_get_sitedir)/ephem/tests" || die + } + python_foreach_impl delete_tests +} diff --git a/sci-astronomy/pyephem/pyephem-3.7.6.0.ebuild b/sci-astronomy/pyephem/pyephem-3.7.6.0.ebuild new file mode 100644 index 000000000000..f7b4607c62f7 --- /dev/null +++ b/sci-astronomy/pyephem/pyephem-3.7.6.0.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 + +DESCRIPTION="Astronomical routines for the python programming language" +HOMEPAGE="http://rhodesmill.org/pyephem/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="LGPL-3" +SLOT="0" +KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux" +IUSE="doc test" + +DEPEND="doc? ( dev-python/sphinx )" +RDEPEND="" + +src_prepare() { + # don't install rst files by dfefault + sed -i -e "s:'doc/\*\.rst',::" setup.py || die + distutils-r1_src_prepare +} + +src_compile() { + distutils-r1_src_compile + if use doc; then + PYTHONPATH=. emake -C ephem/doc html + fi +} + +python_test() { + if [[ ${PYTHON_ABI} == "2.7" ]]; then + PYTHONPATH="$(ls -d ${BUILD_DIR}/lib*)" \ + ${EPYTHON} -m unittest discover -s ephem + else + PYTHONPATH="$(ls -d ${BUILD_DIR}/lib*)" \ + unit2 discover -s ephem + fi +} + +src_install() { + use doc && HTML_DOCS=( ephem/doc/_build/html/. ) + distutils-r1_src_install + + delete_tests() { + rm -r "${D}$(python_get_sitedir)/ephem/tests" || die + } + python_foreach_impl delete_tests +} diff --git a/sci-astronomy/scamp/Manifest b/sci-astronomy/scamp/Manifest new file mode 100644 index 000000000000..7902058e6e0d --- /dev/null +++ b/sci-astronomy/scamp/Manifest @@ -0,0 +1,4 @@ +DIST scamp-2.0.4.tar.gz 4876618 SHA256 cbcd57f5042feefa081dc0c5ff07f7f50114a7ef41e79c060ed163caae119d41 SHA512 ed0a824ddcc3f9c791121323bb59969e89f509a2c429c0abb45655e6852bc452bd46c539dbebfd23097af1c7dbef9d3d905030083828974f75233ea4af4484d5 WHIRLPOOL bc87946ebacd2d723693898aac5a4702eecc138093cab987f76dfc8fb91c963bfaf13d25bd9042ee1fa23002816c4dde1d439da92839236f170adc119afee7d5 +EBUILD scamp-2.0.4.ebuild 1259 SHA256 95f8bbf29c88ea15f7cb6ffcb2e7ab32a8326d0dbe17f74554a0338cc53918df SHA512 b4ecceb3160ecb4582d49b97ceedddd479e121e7293bcfeb0156ed68ab33255c646dc4fd2d82d52d7ef5ab7d7c37cab6cb0ffc611df46b11f58d4f7a86ce6dfe WHIRLPOOL 2076ba16ed4c129eb1392c843e8f4b2c3e496282f8d2667493f60d55f43ca020c6379d1d822d1c1ced4ef2f75ee5581be6286954db04877b590bb19735c84706 +MISC ChangeLog 313 SHA256 6261fa0f2b66715604e3e122eed5932d3b6984649ed72520f1c60a4b555ec938 SHA512 b8e588db5c227f93833172daefb3198460bcfdf2ce83516da89df127abce85dec81e2cfc76023a57682f076669154182ba7ff7ae7cdd0a34490dd6f93bbb01d6 WHIRLPOOL 2e9d2b44bf9cf7a8bc2f31d597a93d5d5726fe84bdcfc8c95c4ec07f95cb9657cffb90ae233d00347ba70cdbcb55702c26b0731b40e181d705fe5372e0f3b2b4 +MISC metadata.xml 609 SHA256 95fa7ae186c457604d8b219e72264badf52f03e616ef37b65bdc781b1fc9b8ff SHA512 d4165ef6ac71ad229e8deaa2b968398def27cd80528d845de16b17739c26a92f869199f78d469a224fbe76cab0f735177b8938a76bb723b772a56023c86556c2 WHIRLPOOL a3a5e79a4aabdc24b401b0569bb49edccbfb94fd250a17b9e0f3f15cb84b7e879b64ff5592466e71185152ff84fd500e83ac19bb8444adfc2d86dacc55ca639b diff --git a/sci-astronomy/scamp/metadata.xml b/sci-astronomy/scamp/metadata.xml new file mode 100644 index 000000000000..d337960dbee2 --- /dev/null +++ b/sci-astronomy/scamp/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + SCAMP computes astrometric and photometric solutions from SExtractor catalogs + and stores them in header files. These headers files can be read by SWarp to + coadd images. +</longdescription> +<use> + <flag name="plplot">Build with <pkg>sci-libs/plplot</pkg> to allow diagnostic plots during processing</flag> +</use> +</pkgmetadata> diff --git a/sci-astronomy/scamp/scamp-2.0.4.ebuild b/sci-astronomy/scamp/scamp-2.0.4.ebuild new file mode 100644 index 000000000000..ac8a2435dd18 --- /dev/null +++ b/sci-astronomy/scamp/scamp-2.0.4.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +DESCRIPTION="Astrometric and photometric solutions for astronomical images" +HOMEPAGE="http://www.astromatic.net/software/scamp" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" +IUSE="doc plplot threads" + +RDEPEND=" + sci-astronomy/cdsclient + sci-libs/atlas[lapack,threads=] + sci-libs/fftw:3.0 + plplot? ( sci-libs/plplot:= )" +DEPEND="${RDEPEND}" + +src_prepare() { + default + local mycblas=atlcblas myclapack=atlclapack + if use threads; then + [[ -e "${EPREFIX}"/usr/$(get_libdir)/libptcblas.so ]] && \ + mycblas=ptcblas + [[ -e "${EPREFIX}"/usr/$(get_libdir)/libptclapack.so ]] && \ + myclapack=ptclapack + fi + sed -e "s/-lcblas/-l${mycblas}/g" \ + -e "s/AC_CHECK_LIB(cblas/AC_CHECK_LIB(${mycblas}/g" \ + -e "s|lapack_lib=\"lapack\"|lapack_lib=${myclapack}|" \ + -i acx_atlas.m4 || die + sed -e 's|plplotd|plplot|g' -i acx_plplot.m4 || die + eautoreconf +} + +src_configure() { + econf \ + --with-atlas-incdir="${EPREFIX}/usr/include/atlas" \ + $(use_enable plplot) \ + $(use_enable threads) +} + +src_install () { + default + use doc && dodoc doc/* +} diff --git a/sci-astronomy/sextractor/Manifest b/sci-astronomy/sextractor/Manifest new file mode 100644 index 000000000000..6274a1762017 --- /dev/null +++ b/sci-astronomy/sextractor/Manifest @@ -0,0 +1,9 @@ +AUX sextractor-2.19.5-fix-format-errors.patch 2189 SHA256 250dbeb63d9dbfb05b69c3ce2f22a284de88b6070f4dc5445e07fa741d1f31da SHA512 7f7252fbd662bfc14f7bd141a74430d4dbb876c6ea5f1634a4e77379ca1916459db6929becc1e3510e71079c8ec718e93551b63ca0374b574d432f0ea49d2be5 WHIRLPOOL ab4cc3e16a5cc458a6f4c41528689f6ce5b912c9f0a75bb216230d399d6c5f18e2f825ec20a2f669282b3197b65c6839fdd7d5026bf7ca8dcf1ef42bf6c78b17 +AUX sextractor-2.19.5-have-malloc.patch 543 SHA256 0d624e57bc3dbf0038505bc5b4c2762d7d6cadadcbeccfae256f028451627157 SHA512 98bcfbe9a010f58976782113e3ad7f4eb1008f3f39a62a4a7a17ed74a03d05957198806da9972337052472d0c628875085fef1f85aefe573a7fe66347dd52090 WHIRLPOOL 1181181953fadd2fc240ab8e890f75cf397de7899575fa665179320199b13ab325bdf5a3bce5706b607b12e5aa764d8369d419270e2d268032d7abd8388a1263 +AUX sextractor-2.19.5-have-mmap.patch 1406 SHA256 5fbd289f5659f1ebe0856832dfcfee5ef6032bad83b6f7df36efc1a8720ad3b5 SHA512 b944a9c75b379932faa0af70d6e215ccbe113b2b063939d8a21810a1c03deecdb0c5a2947b4ebdf4c1396426bd2382e3014e906ac68ef17962670e3705d95a45 WHIRLPOOL 74d47decc00b6e1e12d4a2973b3baaa98378795c3e56ffc5c408d320658ac591ff82d099ee34b78c83ec1ff1f2b348cff9f1822edc10fb68a6b13d2f0579db4c +AUX sextractor-2.19.5-sigbus.patch 736 SHA256 6dbece30c6d805cebc9211648c08b5b5013f8c2dfc3c5d91ddb6e80c337a5d28 SHA512 bca9ad7a758294812761b9f860cc40cd931a5753f248a4682858e9fd1b917a485d5e0b891e17b90c96b54d0e7f05d1aa2e2e7e6143fdc52ec57d4a609c9f4df6 WHIRLPOOL 7cf8f0a365dca534b94557c2897d2f848f44def25e18549060646f4b8e3e5fcc5460c65bc424286037c8d5caafc86ca23fc2aed6fbb2e34addcc8d6ba47fc9a4 +DIST sextractor-2.19.5.tar.gz 4317039 SHA256 2a880e018585f905300d5919ab454b18640a5bef13deb5c4f03111ac4710b2c5 SHA512 aadd007facad983ea35bd7496a53520f987aa8e492259e428170354d262212e3c1a17c60bf6ea97b6056136b0bd02793e92e14b21cb40a0f8886245eeeac6f4d WHIRLPOOL cf499f4763ebf07d94ccb630030baa1b1e3e03972a9f214ee965c1f742548ee46fa4ce22203d1a6ee7c0817c2915d36483d1a7d7fcc04348beb559f5b5dd4464 +EBUILD sextractor-2.19.5-r1.ebuild 1753 SHA256 b27b42e05c3d0d6fdfbbbd2bf60293fb8e49008a369a6c62a55de38050ab1043 SHA512 632af0c3956430c889f4116c9e94b9ace09db33d32e73b32ea698d73c5a14eca132725952dd97e72ec2bd49bda57e5c827529b4fa3676b1c62801786c02ba62f WHIRLPOOL faea1b5698e9865eff883a996e847156380e742cdc3fcd0811dadc8c959e7558a0febaac94a9f678b030ca816ac377b67627dada867de9b3c1fc495eacbfe2f7 +EBUILD sextractor-2.19.5.ebuild 1736 SHA256 a3feea0bea272daebe919b71cdf5d3b8e2abffb7f9a0e473e3f5ad7de339146f SHA512 a2b499ae626f800c8a90cfd6660e8a9572ad32ef6901419e908262ea9a77e9736322094502a18e50b194b8ede567a25f45d1353976d7cef4d37760965b260ee1 WHIRLPOOL 0a914419f6862a4641165834164f33d3a48e5de063e3bd1ea5dbc20186e5a1ec707536aca3077269b9ea11690006f1c0bb48681c20d0a9bb6deaf3b44fea1efa +MISC ChangeLog 772 SHA256 3e8d8373ec75c964744c9ad21c8b1654d524dfc7418aee5873f3b4e17890a9f9 SHA512 06f7aedc895ceec746fb4be5d3e25c5a2caf23a100c4d440bedbba903bb46acc1191686cb2af5935714dc7653caa9cd02836b9e4282a814fc609d7cb1e4189b4 WHIRLPOOL 161e87c7b64b468c78570c875a2c8e8a696757f91b31288e732681edd15dba9da4aa6828e97822ae0d37cea9144b8da03ceaa7b1096f23575468f9c024249ef1 +MISC metadata.xml 797 SHA256 31cc4755cfc875af4eb0b182853c17ad2d343a4823338cdd0c69fbb2576cb787 SHA512 83f4baddd93a51960fb6adf2d55b7c5cda033f92ad5dc92eb7e6f15392432f49f40b1fe07dcfc475a464a6d3502696a3639c0e33d5c45848fbda686a1777189c WHIRLPOOL 3604f71360dd354d872af000e6d3f9a92a2b607df27d87589fa3d428c5d34530c91040de4e070111d640e1006bf0cc021573e3d764d5c0755253f42b7b004b88 diff --git a/sci-astronomy/sextractor/files/sextractor-2.19.5-fix-format-errors.patch b/sci-astronomy/sextractor/files/sextractor-2.19.5-fix-format-errors.patch new file mode 100644 index 000000000000..c20ce31ee30e --- /dev/null +++ b/sci-astronomy/sextractor/files/sextractor-2.19.5-fix-format-errors.patch @@ -0,0 +1,65 @@ +Author: Ole Streicher <debian@liska.ath.cx> +Description: Fix format security errors +--- a/src/catout.c ++++ b/src/catout.c +@@ -999,7 +999,7 @@ + break; + + case ASCII_SKYCAT: +- fprintf(ascfile, skycattail); ++ fprintf(ascfile, "%s", skycattail); + if (!prefs.pipe_flag) + fclose(ascfile); + break; +--- a/src/xml.c ++++ b/src/xml.c +@@ -696,7 +696,7 @@ + name, ucd); + break; + case P_STRING: +- sprintf(value, (char *)key[i].ptr); ++ sprintf(value, "%s", (char *)key[i].ptr); + fprintf(file, " <PARAM name=\"%s\" datatype=\"char\" arraysize=\"*\"" + " ucd=\"%s\" value=\"%s\"/>\n", + name, ucd, *value? value: " "); +@@ -705,13 +705,13 @@ + n = *(key[i].nlistptr); + if (n) + { +- sprintf(value, ((char **)key[i].ptr)[0]); ++ sprintf(value, "%s", ((char **)key[i].ptr)[0]); + fprintf(file, " <PARAM name=\"%s\" datatype=\"char\"" + " arraysize=\"*\" ucd=\"%s\" value=\"%s", + name, ucd, *value? value: " "); + for (j=1; j<n; j++) + { +- sprintf(value, ((char **)key[i].ptr)[j]); ++ sprintf(value, "%s", ((char **)key[i].ptr)[j]); + fprintf(file, ",%s", *value? value: " "); + } + fprintf(file, "\"/>\n"); +@@ -722,7 +722,7 @@ + name, ucd); + break; + case P_KEY: +- sprintf(value, key[i].keylist[*((int *)key[i].ptr)]); ++ sprintf(value, "%s", key[i].keylist[*((int *)key[i].ptr)]); + fprintf(file, " <PARAM name=\"%s\" datatype=\"char\" arraysize=\"*\"" + " ucd=\"%s\" value=\"%s\"/>\n", + name, ucd, value); +@@ -731,13 +731,13 @@ + n = *(key[i].nlistptr); + if (n) + { +- sprintf(value, key[i].keylist[((int *)key[i].ptr)[0]]); ++ sprintf(value, "%s", key[i].keylist[((int *)key[i].ptr)[0]]); + fprintf(file, " <PARAM name=\"%s\" datatype=\"char\"" + " arraysize=\"*\" ucd=\"%s\" value=\"%s", + name, ucd, value); + for (j=1; j<n; j++) + { +- sprintf(value, key[i].keylist[((int *)key[i].ptr)[j]]); ++ sprintf(value, "%s", key[i].keylist[((int *)key[i].ptr)[j]]); + fprintf(file, ",%s", value); + } + fprintf(file, "\"/>\n"); diff --git a/sci-astronomy/sextractor/files/sextractor-2.19.5-have-malloc.patch b/sci-astronomy/sextractor/files/sextractor-2.19.5-have-malloc.patch new file mode 100644 index 000000000000..dd10d4a2c3cd --- /dev/null +++ b/sci-astronomy/sextractor/files/sextractor-2.19.5-have-malloc.patch @@ -0,0 +1,32 @@ +Author: Justin Pryzby <justinpryzby@users.sf.net> +Description: (guess) Define rpl_malloc if not there. +--- a/src/misc.c ++++ b/src/misc.c +@@ -34,6 +34,8 @@ + #include <time.h> + #include <sys/time.h> + ++#include <sys/types.h> ++ + #include "define.h" + #include "globals.h" + +@@ -153,3 +155,18 @@ + } + + ++#if !HAVE_MALLOC ++#undef malloc ++ ++// Allocate an N-byte block of memory from the heap. If N is zero, ++// allocate a 1-byte block. ++void *rpl_malloc(size_t n) ++{ ++ void *malloc(); ++ if (0==n) { ++ n = 1; ++ } ++ ++ return malloc(n); ++} ++#endif diff --git a/sci-astronomy/sextractor/files/sextractor-2.19.5-have-mmap.patch b/sci-astronomy/sextractor/files/sextractor-2.19.5-have-mmap.patch new file mode 100644 index 000000000000..1b6565089849 --- /dev/null +++ b/sci-astronomy/sextractor/files/sextractor-2.19.5-have-mmap.patch @@ -0,0 +1,55 @@ +Author: Justin Pryzby <justinpryzby@users.sf.net> +Description: (guess) Use mmap only if it exists. +--- a/src/fits/fitsbody.c ++++ b/src/fits/fitsbody.c +@@ -64,9 +64,12 @@ + ***/ + PIXTYPE *alloc_body(tabstruct *tab, void (*func)(PIXTYPE *ptr, int npix)) + { ++#ifdef HAVE_MMAP + FILE *file; + PIXTYPE *buffer; +- size_t npix, size, sizeleft, spoonful; ++ size_t sizeleft, spoonful; ++#endif ++ size_t npix, size; + + if (!body_ramflag) + { +@@ -87,7 +90,9 @@ + /* Decide if the data will go in physical memory or on swap-space */ + npix = tab->tabsize/tab->bytepix; + size = npix*sizeof(PIXTYPE); ++#if !HAVE_MMAP + if (size < body_ramleft) ++#endif + { + /*-- There should be enough RAM left: try to do a malloc() */ + if ((tab->bodybuf = malloc(size))) +@@ -105,6 +110,7 @@ + tab->bodybuf = NULL; + } + ++#if HAVE_MMAP + if (size < body_vramleft) + { + /*-- Convert and copy the data to a swap file, and mmap() it */ +@@ -144,6 +150,7 @@ + return NULL; + return (PIXTYPE *)tab->bodybuf; + } ++#endif + + /* If no memory left at all: forget it! */ + return NULL; +@@ -270,8 +277,10 @@ + size = (tab->tabsize/tab->bytepix)*sizeof(PIXTYPE); + if (tab->swapflag) + { ++#if HAVE_MMAP + if (munmap(tab->bodybuf, size)) + warning("Can't unmap ", tab->cat->filename); ++#endif + tab->swapflag = 0; + tab->bodybuf = NULL; + body_vramleft += size; diff --git a/sci-astronomy/sextractor/files/sextractor-2.19.5-sigbus.patch b/sci-astronomy/sextractor/files/sextractor-2.19.5-sigbus.patch new file mode 100644 index 000000000000..2796f63884e3 --- /dev/null +++ b/sci-astronomy/sextractor/files/sextractor-2.19.5-sigbus.patch @@ -0,0 +1,26 @@ +Author: Justin Pryzby <justinpryzby@users.sf.net> +Description: (guess) Handle the "sigbus" case only if it exists +--- a/src/fits/fitscleanup.c ++++ b/src/fits/fitscleanup.c +@@ -164,7 +164,9 @@ + /* Catch CTRL-Cs */ + signal(SIGINT, signal_function); + /* Catch bus errors */ ++#ifdef SIGBUS // TODO: what if it is an enum? + signal(SIGBUS, signal_function); ++#endif + /* Catch segmentation faults */ + signal(SIGSEGV, signal_function); + /* Catch floating exceptions */ +@@ -195,9 +197,11 @@ + case SIGINT: + fprintf(stderr, "^C\n"); + exit(-1); ++#ifdef SIGBUS + case SIGBUS: + fprintf(stderr, "bus error\n"); + exit(-1); ++#endif + case SIGSEGV: + fprintf(stderr, "segmentation fault\n"); + exit(-1); diff --git a/sci-astronomy/sextractor/metadata.xml b/sci-astronomy/sextractor/metadata.xml new file mode 100644 index 000000000000..87b74a0a93cb --- /dev/null +++ b/sci-astronomy/sextractor/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> +<email>sci-astronomy@gentoo.org</email> +<name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + SExtractor (Source Extractor) is a program that builds a catalogue of + objects from an astronomical image. Although it is particularly + oriented towards reduction of large scale galaxy-survey data, it + performs rather well on moderately crowded star fields. It has the + ability to automatically separate stars and galaxy using neural + networks. +</longdescription> +<use> +<flag name="modelfit"> + Enable profile model fitting, needs <pkg>sci-libs/atlas</pkg> + and <pkg>sci-libs/fftw</pkg> +</flag> +</use> +</pkgmetadata> diff --git a/sci-astronomy/sextractor/sextractor-2.19.5-r1.ebuild b/sci-astronomy/sextractor/sextractor-2.19.5-r1.ebuild new file mode 100644 index 000000000000..a3aae82d8cdf --- /dev/null +++ b/sci-astronomy/sextractor/sextractor-2.19.5-r1.ebuild @@ -0,0 +1,73 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +AUTOTOOLS_AUTO_DEPEND=no + +inherit autotools + +DESCRIPTION="Extract catalogs of sources from astronomical FITS images" +HOMEPAGE="http://www.astromatic.net/software/sextractor" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" + +IUSE="doc modelfit test threads" + +RDEPEND=" + !games-misc/sex + modelfit? ( sci-libs/atlas[lapack,threads=] sci-libs/fftw:3.0 )" +DEPEND="${RDEPEND} + modelfit? ( ${AUTOTOOLS_DEPEND} )" + +REQUIRED_USE="test? ( modelfit )" + +PATCHES=( + "${FILESDIR}/${P}-fix-format-errors.patch" + "${FILESDIR}/${P}-have-malloc.patch" + "${FILESDIR}/${P}-have-mmap.patch" + "${FILESDIR}/${P}-sigbus.patch" +) + +src_prepare() { + default + if use modelfit; then + local mycblas=atlcblas myclapack=atlclapack + if use threads; then + [[ -e "${EPREFIX}"/usr/$(get_libdir)/libptcblas.so ]] && \ + mycblas=ptcblas + [[ -e "${EPREFIX}"/usr/$(get_libdir)/libptclapack.so ]] && \ + myclapack=ptclapack + fi + sed -i \ + -e "s/-lcblas/-l${mycblas}/g" \ + -e "s/AC_CHECK_LIB(cblas/AC_CHECK_LIB(${mycblas}/g" \ + -e "s/-llapack/-l${myclapack}/g" \ + -e "s/AC_CHECK_LIB(lapack/AC_CHECK_LIB(${myclapack}/g" \ + acx_atlas.m4 || die + eautoreconf + fi +} + +src_configure() { + econf \ + --with-atlas-incdir="${EPREFIX}/usr/include/atlas" \ + $(use_enable modelfit model-fitting) \ + $(use_enable threads) +} + +src_install () { + default + CONFDIR=/usr/share/sextractor + insinto ${CONFDIR} + doins config/* + use doc && dodoc doc/* +} + +pkg_postinst() { + elog "SExtractor examples configuration files are located in" + elog "${EROOT%/}/${CONFDIR} and are not loaded anymore by default." +} diff --git a/sci-astronomy/sextractor/sextractor-2.19.5.ebuild b/sci-astronomy/sextractor/sextractor-2.19.5.ebuild new file mode 100644 index 000000000000..3aeded5ecbc8 --- /dev/null +++ b/sci-astronomy/sextractor/sextractor-2.19.5.ebuild @@ -0,0 +1,72 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +AUTOTOOLS_AUTO_DEPEND=no + +inherit autotools + +DESCRIPTION="Extract catalogs of sources from astronomical FITS images" +HOMEPAGE="http://www.astromatic.net/software/sextractor" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" + +IUSE="doc modelfit test threads" + +RDEPEND=" + modelfit? ( sci-libs/atlas[lapack,threads=] sci-libs/fftw:3.0 )" +DEPEND="${RDEPEND} + modelfit? ( ${AUTOTOOLS_DEPEND} )" + +REQUIRED_USE="test? ( modelfit )" + +PATCHES=( + "${FILESDIR}/${P}-fix-format-errors.patch" + "${FILESDIR}/${P}-have-malloc.patch" + "${FILESDIR}/${P}-have-mmap.patch" + "${FILESDIR}/${P}-sigbus.patch" +) + +src_prepare() { + default + if use modelfit; then + local mycblas=atlcblas myclapack=atlclapack + if use threads; then + [[ -e "${EPREFIX}"/usr/$(get_libdir)/libptcblas.so ]] && \ + mycblas=ptcblas + [[ -e "${EPREFIX}"/usr/$(get_libdir)/libptclapack.so ]] && \ + myclapack=ptclapack + fi + sed -i \ + -e "s/-lcblas/-l${mycblas}/g" \ + -e "s/AC_CHECK_LIB(cblas/AC_CHECK_LIB(${mycblas}/g" \ + -e "s/-llapack/-l${myclapack}/g" \ + -e "s/AC_CHECK_LIB(lapack/AC_CHECK_LIB(${myclapack}/g" \ + acx_atlas.m4 || die + eautoreconf + fi +} + +src_configure() { + econf \ + --with-atlas-incdir="${EPREFIX}/usr/include/atlas" \ + $(use_enable modelfit model-fitting) \ + $(use_enable threads) +} + +src_install () { + default + CONFDIR=/usr/share/sextractor + insinto ${CONFDIR} + doins config/* + use doc && dodoc doc/* +} + +pkg_postinst() { + elog "SExtractor examples configuration files are located in" + elog "${EROOT%/}/${CONFDIR} and are not loaded anymore by default." +} diff --git a/sci-astronomy/skycat/Manifest b/sci-astronomy/skycat/Manifest new file mode 100644 index 000000000000..b6a28784a07b --- /dev/null +++ b/sci-astronomy/skycat/Manifest @@ -0,0 +1,13 @@ +AUX skycat-3.0.2-systemlibs.patch 5290 SHA256 b510c3b97029b5619a81f4130c01df80ec18a34a2825e809811deef946afe4e2 SHA512 d84569892d4e563e3cee143c24b92e8e9de92133a6df640713a83de6f8aa96b9d7c17f1a0c44f4cd5eccd7ddfb3ec2cdd2aefdd4c8ec3ab4c8afcfa06542441b WHIRLPOOL d9375a2e6126bc2db5259ea6c664a0f1cb78058bb765fa78a96c84e5d925a501fcee9d8afea0d759053de2e0bc1d0e9807b1d8d8722d83a44348c3f6276e6181 +AUX skycat-3.0.2-tk8.5.patch 877 SHA256 6a9048f16a88fca2db57efd2599220508bb283274766f0cb6b85e1c0c445a889 SHA512 d1ea2809a8afa2f5c2868dc53e0fdb7dbc393449ba87c633662dd018c409c464516487824cee4b6dd2cf49a95d05e51747522e068bbad6494d345f31566f7108 WHIRLPOOL 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20:48:27.000000000 -0400 +@@ -83,10 +83,10 @@ + #----------------------------------------------------------------------- + + changequote(<<, >>) +-csources=`cd $srcdir; echo {generic,press,libwcs,cfitsio}/*.[Cc]` ++csources=`cd $srcdir; echo {generic,press}/*.[Cc]` + changequote([, ]) +-cheaders=`cd $srcdir; echo {generic,press,libwcs,cfitsio}/*.h` +-cincludes="-I$srcdir/../tclutil/generic -I$srcdir/generic -I$srcdir/press -I$srcdir/libwcs -I$srcdir/cfitsio" ++cheaders=`cd $srcdir; echo {generic,press}/*.h` ++cincludes="-I$srcdir/../tclutil/generic -I$srcdir/generic -I$srcdir/press -I/usr/include/wcs -I/usr/include/" + tclsources=`cd $srcdir; echo library/*.tcl` + + TEA_ADD_SOURCES([${csources}]) +diff -Naur skycat-3.0.2/cat/aclocal.m4 skycat-3.0.2.new/cat/aclocal.m4 +--- skycat-3.0.2/cat/aclocal.m4 2006-01-23 12:24:46.000000000 -0500 ++++ skycat-3.0.2.new/cat/aclocal.m4 2009-09-24 20:31:00.000000000 -0400 +@@ -47,11 +47,11 @@ + changequote([, ]) + + cat_headers=`cd $srcdir; echo generic/*.h` +-astrotcl_headers=`cd $srcdir; echo ../astrotcl/{generic,press,libwcs,cfitsio}/*.h` ++astrotcl_headers=`cd $srcdir; echo ../astrotcl/{generic,press}/*.h` + tclutil_headers=`cd $srcdir; echo ../tclutil/generic/*.h` + + cat_includes="-I$srcdir/generic -I$srcdir/bitmaps" +-astrotcl_includes="-I$srcdir/../astrotcl/generic -I$srcdir/../astrotcl/cfitsio -I$srcdir/../astrotcl/libwcs" ++astrotcl_includes="-I$srcdir/../astrotcl/generic -I/usr/include -I/usr/include/wcs" + tclutil_includes="-I$srcdir/../tclutil/generic" + cincludes="${cat_includes} ${astrotcl_includes} ${tclutil_includes}" + +diff -Naur skycat-3.0.2/cat/configure.in skycat-3.0.2.new/cat/configure.in +--- skycat-3.0.2/cat/configure.in 2006-02-03 05:29:48.000000000 -0500 ++++ skycat-3.0.2.new/cat/configure.in 2009-09-24 20:51:56.000000000 -0400 +@@ -181,6 +181,9 @@ + # and TEA_LOAD_TCLCONFIG macros above. + #-------------------------------------------------------------------- + ++# we need wcstools and cfitsio ++PKG_LIBS="${PKG_LIBS} -lwcstools -lcfitsio" ++ + TEA_MAKE_LIB + + #-------------------------------------------------------------------- +diff -Naur skycat-3.0.2/rtd/aclocal.m4 skycat-3.0.2.new/rtd/aclocal.m4 +--- skycat-3.0.2/rtd/aclocal.m4 2006-02-01 17:10:36.000000000 -0500 ++++ skycat-3.0.2.new/rtd/aclocal.m4 2009-09-24 20:27:46.000000000 -0400 +@@ -50,11 +50,11 @@ + changequote([, ]) + + rtd_headers=`cd $srcdir; echo generic/*.h rtdevt/rtdImageEvent.h rtdevt/rtdSem.h` +-astrotcl_headers=`cd $srcdir; echo ../astrotcl/{generic,press,libwcs,cfitsio}/*.h` ++astrotcl_headers=`cd $srcdir; echo ../astrotcl/{generic,press}/*.h` + tclutil_headers=`cd $srcdir; echo ../tclutil/generic/*.h` + + rtd_includes="-I$srcdir/generic -I$srcdir/rtdevt -I$srcdir/bitmaps" +-astrotcl_includes="-I$srcdir/../astrotcl/generic -I$srcdir/../astrotcl/cfitsio -I$srcdir/../astrotcl/libwcs" ++astrotcl_includes="-I$srcdir/../astrotcl/generic -I/usr/include -I/usr/include/wcs" + tclutil_includes="-I$srcdir/../tclutil/generic" + cincludes="${rtd_includes} ${astrotcl_includes} ${tclutil_includes}" + +diff -Naur skycat-3.0.2/rtd/configure.in skycat-3.0.2.new/rtd/configure.in +--- skycat-3.0.2/rtd/configure.in 2006-02-01 17:10:36.000000000 -0500 ++++ skycat-3.0.2.new/rtd/configure.in 2009-09-24 20:49:11.000000000 -0400 +@@ -192,7 +192,7 @@ + #-------------------------------------------------------------------- + + # rtd needs -lXext +-PKG_LIBS="${PKG_LIBS} -lXext" ++PKG_LIBS="${PKG_LIBS} -lXext -lwcstools -lcfitsio" + + TEA_MAKE_LIB + +diff -Naur skycat-3.0.2/skycat/aclocal.m4 skycat-3.0.2.new/skycat/aclocal.m4 +--- skycat-3.0.2/skycat/aclocal.m4 2006-01-26 17:47:20.000000000 -0500 ++++ skycat-3.0.2.new/skycat/aclocal.m4 2009-09-24 20:33:31.000000000 -0400 +@@ -79,13 +79,13 @@ + skycat_headers=`cd $srcdir; echo generic/*.h` + cat_headers=`cd $srcdir; echo ../cat/generic/*.h` + rtd_headers=`cd $srcdir; echo ../rtd/generic/*.h ../rtd/rtdevt/rtdImageEvent.h ../rtd/rtdevt/rtdSem.h` +-astrotcl_headers=`cd $srcdir; echo ../astrotcl/{generic,press,libwcs,cfitsio}/*.h` ++astrotcl_headers=`cd $srcdir; echo ../astrotcl/{generic,press}/*.h` + tclutil_headers=`cd $srcdir; echo ../tclutil/generic/*.h` + + skycat_includes="-I$srcdir/generic -I$srcdir/bitmaps" + cat_includes="-I$srcdir/../cat/generic" + rtd_includes="-I$srcdir/../rtd/generic -I$srcdir/../rtd/rtdevt" +-astrotcl_includes="-I$srcdir/../astrotcl/generic -I$srcdir/../astrotcl/cfitsio -I$srcdir/../astrotcl/libwcs" ++astrotcl_includes="-I$srcdir/../astrotcl/generic -I/usr/include -I/usr/include/wcs" + tclutil_includes="-I$srcdir/../tclutil/generic" + cincludes="${skycat_includes} ${cat_includes} ${rtd_includes} ${astrotcl_includes} ${tclutil_includes}" + +diff -Naur skycat-3.0.2/skycat/configure.in skycat-3.0.2.new/skycat/configure.in +--- skycat-3.0.2/skycat/configure.in 2008-06-11 11:04:25.000000000 -0400 ++++ skycat-3.0.2.new/skycat/configure.in 2009-09-24 20:52:26.000000000 -0400 +@@ -182,7 +182,7 @@ + #-------------------------------------------------------------------- + + # skycat needs -lXext +-PKG_LIBS="${PKG_LIBS} -lXext" ++PKG_LIBS="${PKG_LIBS} -lXext -lwcstools -lcfitsio" + + TEA_MAKE_LIB + diff --git a/sci-astronomy/skycat/files/skycat-3.0.2-tk8.5.patch b/sci-astronomy/skycat/files/skycat-3.0.2-tk8.5.patch new file mode 100644 index 000000000000..2cb325da853d --- /dev/null +++ b/sci-astronomy/skycat/files/skycat-3.0.2-tk8.5.patch @@ -0,0 +1,21 @@ +--- skycat-3.0.2.orig/rtd/generic/RtdImage.C 2006-02-02 18:36:47.000000000 +0100 ++++ skycat-3.0.2/rtd/generic/RtdImage.C 2009-09-15 09:23:44.505239756 +0200 +@@ -913,6 +913,9 @@ + updateIdleTasks(); + } + ++#ifndef MODULE_SCOPE ++#define MODULE_SCOPE extern ++#endif + + // Fix for Tk clipping coordinates to short range: See CanvasWindowCoordsNoClip() below. + #ifdef HAVE_TKCANVAS_H +--- skycat-3.0.2.orig/skycat/skycat.in 2006-02-04 14:27:30.000000000 +0100 ++++ skycat-3.0.2/skycat/skycat.in 2009-09-15 09:20:45.910857133 +0200 +@@ -54,5 +54,5 @@ + + test -d $HOME/.skycat || mkdir $HOME/.skycat + echo "`date`: Starting skycat with: $0 ${1+"$@"}" > $HOME/.skycat/log +-exec wish8.4 $SKYCAT_BASE/lib/skycat@PACKAGE_VERSION@/main.tcl ${1+"$@"} | tee -a $HOME/.skycat/log 2>&1 ++exec wish8.5 $SKYCAT_BASE/lib/skycat@PACKAGE_VERSION@/main.tcl ${1+"$@"} | tee -a $HOME/.skycat/log 2>&1 + diff --git a/sci-astronomy/skycat/files/skycat-3.1.2-m4.patch b/sci-astronomy/skycat/files/skycat-3.1.2-m4.patch new file mode 100644 index 000000000000..ff61c99f05ca --- /dev/null +++ b/sci-astronomy/skycat/files/skycat-3.1.2-m4.patch @@ -0,0 +1,150 @@ +--- a/tclconfig/tcl.m4 ++++ b/tclconfig/tcl.m4 +@@ -731,6 +731,50 @@ + ]) + + #-------------------------------------------------------------------- ++# TEA_CONFIG_SYSTEM ++# ++# Determine what the system is (some things cannot be easily checked ++# on a feature-driven basis, alas). This can usually be done via the ++# "uname" command, but there are a few systems, like Next, where ++# this doesn't work. ++# ++# Arguments: ++# none ++# ++# Results: ++# Defines the following var: ++# ++# system - System/platform/version identification code. ++# ++#-------------------------------------------------------------------- ++ ++AC_DEFUN(TEA_CONFIG_SYSTEM, [ ++ AC_MSG_CHECKING([system version]) ++ AC_CACHE_VAL(tcl_cv_sys_version,[ ++ if test -f /usr/lib/NextStep/software_version; then ++ tcl_cv_sys_version=NEXTSTEP-`awk '/3/,/3/' /usr/lib/NextStep/software_version` ++ else ++ tcl_cv_sys_version=`uname -s`-`uname -r` ++ if test "$?" -ne 0 ; then ++ AC_MSG_WARN([can't find uname command]) ++ tcl_cv_sys_version=unknown ++ else ++ # Special check for weird MP-RAS system (uname returns weird ++ # results, and the version is kept in special file). ++ ++ if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then ++ tcl_cv_sys_version=MP-RAS-`awk '{print $3}' /etc/.relid` ++ fi ++ if test "`uname -s`" = "AIX" ; then ++ tcl_cv_sys_version=AIX-`uname -v`.`uname -r` ++ fi ++ fi ++ fi]) ++ AC_MSG_RESULT($tcl_cv_sys_version) ++ system=$tcl_cv_sys_version ++]) ++ ++#-------------------------------------------------------------------- + # TEA_CONFIG_CFLAGS + # + # Try to determine the proper flags to pass to the compiler +@@ -849,30 +893,7 @@ + # for the system. This can usually be done via the "uname" command, but + # there are a few systems, like Next, where this doesn't work. + +- AC_MSG_CHECKING([system version (for dynamic loading)]) +- if test -f /usr/lib/NextStep/software_version; then +- system=NEXTSTEP-`awk '/3/,/3/' /usr/lib/NextStep/software_version` +- else +- system=`uname -s`-`uname -r` +- if test "$?" -ne 0 ; then +- AC_MSG_RESULT([unknown (can't find uname command)]) +- system=unknown +- else +- # Special check for weird MP-RAS system (uname returns weird +- # results, and the version is kept in special file). +- +- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then +- system=MP-RAS-`awk '{print $3}' /etc/.relid'` +- fi +- if test "`uname -s`" = "AIX" ; then +- system=AIX-`uname -v`.`uname -r` +- fi +- if test "${TEA_PLATFORM}" = "windows" ; then +- system=windows +- fi +- AC_MSG_RESULT([$system]) +- fi +- fi ++ TEA_CONFIG_SYSTEM + + # Step 2: check for existence of -ldl library. This is needed because + # Linux can use either -ldl or -ldld for dynamic loading. +@@ -2318,25 +2339,8 @@ + AC_DEFUN(TEA_BLOCKING_STYLE, [ + AC_CHECK_HEADERS(sys/ioctl.h) + AC_CHECK_HEADERS(sys/filio.h) ++ TEA_CONFIG_SYSTEM + AC_MSG_CHECKING([FIONBIO vs. O_NONBLOCK for nonblocking I/O]) +- if test -f /usr/lib/NextStep/software_version; then +- system=NEXTSTEP-`awk '/3/,/3/' /usr/lib/NextStep/software_version` +- else +- system=`uname -s`-`uname -r` +- if test "$?" -ne 0 ; then +- system=unknown +- else +- # Special check for weird MP-RAS system (uname returns weird +- # results, and the version is kept in special file). +- +- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then +- system=MP-RAS-`awk '{print $3}' /etc/.relid'` +- fi +- if test "`uname -s`" = "AIX" ; then +- system=AIX-`uname -v`.`uname -r` +- fi +- fi +- fi + case $system in + # There used to be code here to use FIONBIO under AIX. However, it + # was reported that FIONBIO doesn't work under AIX 3.2.5. Since +@@ -3031,13 +3035,13 @@ + fi + if test "${exec_prefix}" = "NONE" -a x"${prefix_default}" = x"yes" \ + -o x"${exec_prefix_default}" = x"yes" ; then +- #if test x"${TCL_EXEC_PREFIX}" != x; then +- #AC_MSG_NOTICE([--exec-prefix defaulting to TCL_EXEC_PREFIX ${TCL_EXEC_PREFIX}]) +- #exec_prefix=${TCL_EXEC_PREFIX} +- #else ++ if test x"${TCL_EXEC_PREFIX}" != x; then ++ AC_MSG_NOTICE([--exec-prefix defaulting to TCL_EXEC_PREFIX ${TCL_EXEC_PREFIX}]) ++ exec_prefix=${TCL_EXEC_PREFIX} ++ else + AC_MSG_NOTICE([--exec-prefix defaulting to ${prefix}]) + exec_prefix=$prefix +- #fi ++ fi + fi + ]) + +@@ -3169,7 +3173,7 @@ + MAKE_STUB_LIB="\${STLIB_LD} -out:\[$]@ \$(PKG_STUB_OBJECTS)" + else + MAKE_STATIC_LIB="\${STLIB_LD} \[$]@ \$(PKG_OBJECTS)" +- MAKE_SHARED_LIB="\${SHLIB_LD} -o \[$]@ \$(PKG_OBJECTS) \${SHLIB_LD_LIBS}" ++ MAKE_SHARED_LIB="\${SHLIB_LD} -Wl,-soname=\[$]@ -o \[$]@ \$(PKG_OBJECTS) \${SHLIB_LD_LIBS}" + MAKE_STUB_LIB="\${STLIB_LD} \[$]@ \$(PKG_STUB_OBJECTS)" + fi + +@@ -3817,7 +3821,8 @@ + + # check in a few common install locations + if test x"${ac_cv_c_$1config}" = x ; then +- for i in `ls -d ${exec_prefix}/lib 2>/dev/null` \ ++ for i in `ls -d ${libdir} 2>/dev/null` \ ++ `ls -d ${exec_prefix}/lib 2>/dev/null` \ + `ls -d ${prefix}/lib 2>/dev/null` \ + `ls -d /usr/local/lib 2>/dev/null` \ + `ls -d /usr/contrib/lib 2>/dev/null` \ diff --git a/sci-astronomy/skycat/files/skycat-3.1.2-makefile-qa.patch b/sci-astronomy/skycat/files/skycat-3.1.2-makefile-qa.patch new file mode 100644 index 000000000000..e36e1ece665f --- /dev/null +++ b/sci-astronomy/skycat/files/skycat-3.1.2-makefile-qa.patch @@ -0,0 +1,132 @@ +--- a/astrotcl/Makefile.in ++++ b/astrotcl/Makefile.in +@@ -114,7 +114,7 @@ + RANLIB = @RANLIB@ + RANLIB_STUB = @RANLIB_STUB@ + SHLIB_CFLAGS = @SHLIB_CFLAGS@ +-SHLIB_LD = @SHLIB_LD@ ++SHLIB_LD = @SHLIB_LD@ $(LDFLAGS_DEFAULT) + SHLIB_LD_LIBS = @SHLIB_LD_LIBS@ + STLIB_LD = @STLIB_LD@ + #TCL_DEFS = @TCL_DEFS@ +--- a/rtd/Makefile.in ++++ b/rtd/Makefile.in +@@ -123,7 +123,7 @@ + CLEANFILES = @CLEANFILES@ $(TEST_APPS) *.o tests/*.o + EXEEXT = @EXEEXT@ + LDFLAGS_DEFAULT = @LDFLAGS_DEFAULT@ +-MAKE_LIB = @MAKE_LIB@ $(MERGE_OBJECTS) ++MAKE_LIB = @MAKE_LIB@ $(MERGE_OBJECTS) $(SHLIB_LD_LIBS) + MAKE_SHARED_LIB = @MAKE_SHARED_LIB@ + MAKE_STATIC_LIB = @MAKE_STATIC_LIB@ + MAKE_STUB_LIB = @MAKE_STUB_LIB@ +@@ -131,7 +131,7 @@ + RANLIB = @RANLIB@ + RANLIB_STUB = @RANLIB_STUB@ + SHLIB_CFLAGS = @SHLIB_CFLAGS@ +-SHLIB_LD = @SHLIB_LD@ ++SHLIB_LD = @SHLIB_LD@ $(LDFLAGS_DEFAULT) + SHLIB_LD_LIBS = @SHLIB_LD_LIBS@ + STLIB_LD = @STLIB_LD@ + #TCL_DEFS = @TCL_DEFS@ +@@ -442,14 +442,14 @@ + $(AR) r $@ $(RTDEVT_OBJ) + $(RANLIB) $@ + +-$(RTD_SERVER): $(RTD_SERVER_OBJS) +- $(CXXCOMPILE) -o $@ $(RTD_SERVER_OBJS) $(RTDEVT_LIB) @LIBS@ ++$(RTD_SERVER): $(RTD_SERVER_OBJS) $(RTDEVT_LIB) ++ $(CXXCOMPILE) $(LDFLAGS_DEFAULT) -o $@ $(RTD_SERVER_OBJS) $(RTDEVT_LIB) @LIBS@ + +-rtdClient: rtdClient.o +- $(CXXCOMPILE) -o $@ $? $(RTDEVT_LIB) @LIBS@ ++rtdClient: rtdClient.o $(RTDEVT_LIB) ++ $(CXXCOMPILE) $(LDFLAGS_DEFAULT) -o $@ $? $(RTDEVT_LIB) @LIBS@ + +-rtdCubeDisplay: rtdCubeDisplay.o +- $(CXXCOMPILE) -o $@ $? $(RTDEVT_LIB) @LIBS@ ++rtdCubeDisplay: rtdCubeDisplay.o $(RTDEVT_LIB) ++ $(CXXCOMPILE) $(LDFLAGS_DEFAULT) -o $@ $? $(RTDEVT_LIB) @LIBS@ + + #======================================================================== + # RTD Remote access C library +@@ -464,14 +464,14 @@ + #======================================================================== + test: binaries libraries $(TEST_APPS) + +-tImageEvent: tImageEvent.o +- $(CXXCOMPILE) -o $@ $@.o $(RTDEVT_LIB) @LIBS@ ++tImageEvent: tImageEvent.o $(RTDEVT_LIB) ++ $(CXXCOMPILE) $(LDFLAGS_DEFAULT) -o $@ $@.o $(RTDEVT_LIB) @LIBS@ + + trtdRemote: trtdRemote.o +- $(COMPILE) -o $@ $@.o $(RTD_REMOTE_LIB) @LIBS@ ++ $(COMPILE) $(LDFLAGS_DEFAULT) -o $@ $@.o $(RTD_REMOTE_LIB) @LIBS@ + +-tRtd: tRtd.o tRtdEvt.o tRtdEvtData.o +- $(CXXCOMPILE) -o $@ $@.o tRtdEvt.o tRtdEvtData.o \ ++tRtd: tRtd.o tRtdEvt.o tRtdEvtData.o $(PKG_LIB_FILE) ++ $(CXXCOMPILE) $(LDFLAGS_DEFAULT) -o $@ $@.o tRtdEvt.o tRtdEvtData.o \ + @rtd_BUILD_LIB_SPEC@ @TK_LIB_SPEC@ @TCL_LIB_SPEC@ ${LIBS} + + #======================================================================== +--- a/tclutil/Makefile.in ++++ b/tclutil/Makefile.in +@@ -116,7 +116,7 @@ + RANLIB = @RANLIB@ + RANLIB_STUB = @RANLIB_STUB@ + SHLIB_CFLAGS = @SHLIB_CFLAGS@ +-SHLIB_LD = @SHLIB_LD@ ++SHLIB_LD = @SHLIB_LD@ $(LDFLAGS_DEFAULT) + SHLIB_LD_LIBS = @SHLIB_LD_LIBS@ + STLIB_LD = @STLIB_LD@ + #TCL_DEFS = @TCL_DEFS@ +--- a/skycat/Makefile.in ++++ b/skycat/Makefile.in +@@ -112,7 +112,7 @@ + CLEANFILES = @CLEANFILES@ $(TEST_APPS) *.o tests/*.o + EXEEXT = @EXEEXT@ + LDFLAGS_DEFAULT = @LDFLAGS_DEFAULT@ +-MAKE_LIB = @MAKE_LIB@ $(MERGE_OBJECTS) ++MAKE_LIB = @MAKE_LIB@ $(MERGE_OBJECTS) $(SHLIB_LD_LIBS) + MAKE_SHARED_LIB = @MAKE_SHARED_LIB@ + MAKE_STATIC_LIB = @MAKE_STATIC_LIB@ + MAKE_STUB_LIB = @MAKE_STUB_LIB@ +@@ -120,7 +120,7 @@ + RANLIB = @RANLIB@ + RANLIB_STUB = @RANLIB_STUB@ + SHLIB_CFLAGS = @SHLIB_CFLAGS@ +-SHLIB_LD = @SHLIB_LD@ ++SHLIB_LD = @SHLIB_LD@ $(LDFLAGS_DEFAULT) + SHLIB_LD_LIBS = @SHLIB_LD_LIBS@ + STLIB_LD = @STLIB_LD@ + #TCL_DEFS = @TCL_DEFS@ +--- a/cat/Makefile.in ++++ b/cat/Makefile.in +@@ -116,7 +116,7 @@ + CLEANFILES = @CLEANFILES@ $(TEST_APPS) *.result *.tmp *.o tests/*.o + EXEEXT = @EXEEXT@ + LDFLAGS_DEFAULT = @LDFLAGS_DEFAULT@ +-MAKE_LIB = @MAKE_LIB@ $(MERGE_OBJECTS) ++MAKE_LIB = @MAKE_LIB@ $(MERGE_OBJECTS) $(SHLIB_LD_LIBS) + MAKE_SHARED_LIB = @MAKE_SHARED_LIB@ + MAKE_STATIC_LIB = @MAKE_STATIC_LIB@ + MAKE_STUB_LIB = @MAKE_STUB_LIB@ +@@ -124,7 +124,7 @@ + RANLIB = @RANLIB@ + RANLIB_STUB = @RANLIB_STUB@ + SHLIB_CFLAGS = @SHLIB_CFLAGS@ +-SHLIB_LD = @SHLIB_LD@ ++SHLIB_LD = @SHLIB_LD@ $(LDFLAGS_DEFAULT) + SHLIB_LD_LIBS = @SHLIB_LD_LIBS@ + STLIB_LD = @STLIB_LD@ + #TCL_DEFS = @TCL_DEFS@ +@@ -436,7 +436,7 @@ + cxxtests: $(CXX_TEST_APPS) + + $(CXX_TEST_APPS): FORCE +- $(CXXCOMPILE) -o $@ $(srcdir)/tests/$@.C $(TEST_LIBS) $(LIBS) ++ $(CXXCOMPILE) $(LDFLAGS_DEFAULT) -o $@ $(srcdir)/tests/$@.C $(TEST_LIBS) $(LIBS) + cp $(srcdir)/tests/test.table . + -@@LD_LIBRARY_PATH_VAR@=@exec_prefix@/lib; export @LD_LIBRARY_PATH_VAR@ ;\ + $@ > $@.result 2>&1 ;\ diff --git a/sci-astronomy/skycat/files/skycat-3.1.3-remove-tclx-dep.patch b/sci-astronomy/skycat/files/skycat-3.1.3-remove-tclx-dep.patch new file mode 100644 index 000000000000..73061798d370 --- /dev/null +++ b/sci-astronomy/skycat/files/skycat-3.1.3-remove-tclx-dep.patch @@ -0,0 +1,315 @@ +diff -Nur skycat-3.1.3.orig/astrotcl/library/AstrotclInit.tcl skycat-3.1.3/astrotcl/library/AstrotclInit.tcl +--- skycat-3.1.3.orig/astrotcl/library/AstrotclInit.tcl 2017-08-10 16:18:22.100000000 +0000 ++++ skycat-3.1.3/astrotcl/library/AstrotclInit.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -11,7 +11,7 @@ + # pbiereic 24/08/99 created + # abrighto 21/12/05 updated for new version + +-if {![lcontain $auto_path $astrotcl_library]} { ++if { $auto_path ni $astrotcl_library } { + lappend auto_path $astrotcl_library + } + +diff -Nur skycat-3.1.3.orig/cat/library/AstroCat.tcl skycat-3.1.3/cat/library/AstroCat.tcl +--- skycat-3.1.3.orig/cat/library/AstroCat.tcl 2017-08-10 16:18:22.110000000 +0000 ++++ skycat-3.1.3/cat/library/AstroCat.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -145,7 +145,7 @@ + return + } + if {"$onoff" == "on"} { +- lassign [pipe] rfd_ wfd_ ++ lassign [chan pipe] rfd_ wfd_ + fileevent $rfd_ readable [code $this feedback] + $w_.cat feedback $wfd_ + } elseif {[info exists rfd_]} { +diff -Nur skycat-3.1.3.orig/cat/library/AstroImage.tcl skycat-3.1.3/cat/library/AstroImage.tcl +--- skycat-3.1.3.orig/cat/library/AstroImage.tcl 2017-08-10 16:18:22.110000000 +0000 ++++ skycat-3.1.3/cat/library/AstroImage.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -401,7 +401,7 @@ + return + } + if {"$onoff" == "on"} { +- lassign [pipe] rfd_ wfd_ ++ lassign [chan pipe] rfd_ wfd_ + fileevent $rfd_ readable [code $this feedback] + $w_.im feedback $wfd_ + } elseif {[info exists rfd_]} { +diff -Nur skycat-3.1.3.orig/cat/library/CatInit.tcl skycat-3.1.3/cat/library/CatInit.tcl +--- skycat-3.1.3.orig/cat/library/CatInit.tcl 2017-08-10 16:18:22.110000000 +0000 ++++ skycat-3.1.3/cat/library/CatInit.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -12,7 +12,7 @@ + + package require img::xpm + +-if {![lcontain $auto_path $cat_library]} { ++if { $auto_path ni $cat_library } { + lappend auto_path $cat_library + } + +diff -Nur skycat-3.1.3.orig/rtd/library/RtdImageBias.tcl skycat-3.1.3/rtd/library/RtdImageBias.tcl +--- skycat-3.1.3.orig/rtd/library/RtdImageBias.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/RtdImageBias.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -10,6 +10,12 @@ + + itk::usual RtdImageBias {} + ++# see http://wiki.tcl.tk/2028 ++proc lvarpush {var val {ndx end}} { ++ upvar $var args ++ set args [linsert $args $ndx $val] ++} ++ + # RtdImageBias is a class for controlling the subtraction of + # a bias frame. + +diff -Nur skycat-3.1.3.orig/rtd/library/RtdImageFitsHeader.tcl skycat-3.1.3/rtd/library/RtdImageFitsHeader.tcl +--- skycat-3.1.3.orig/rtd/library/RtdImageFitsHeader.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/RtdImageFitsHeader.tcl 2017-08-10 17:41:35.500000000 +0000 +@@ -11,6 +11,8 @@ + # pbiereic 17/02/03 fixed problems with tabnotebook, packing order + # and labels of tabsets + ++package require Tclutil ++ + itk::usual RtdImageFitsHeader {} + + # RtdImageFitsHeader is an itcl widget for displaying the FITS header of all +@@ -156,7 +158,7 @@ + set tconfig_(sort_cols) $sort_cols + set tconfig_(sort_order) $sort_order + +- loop i 0 $num_hdus_ { ++ for {set i 0} {$i < $num_hdus_} {incr i} { + $tabnotebook_(table$i) config -sort_cols $sort_cols \ + -sort_order $sort_order + $tabnotebook_(table$i) new_info +@@ -169,7 +171,7 @@ + global $var + set val [set $var] + set tconfig_($label) $val +- loop i 0 $num_hdus_ { ++ for {set i 0} {$i < $num_hdus_} {incr i} { + $tabnotebook_(table$i) set_option $label Show $val + $tabnotebook_(table$i) new_info + } +@@ -216,7 +218,7 @@ + + set length [string length [$listbox get 0]] + +- loop n $start_idx $end_idx { ++ for {set n $start_idx} {$n < $end_idx} {incr n} { + set row [string tolower [$listbox get $n]] + if {[catch {regexp -indices $string $row indices} idx] } { continue } + if { $idx > 0 } { +@@ -274,7 +276,7 @@ + set hlist [$image_ hdu list] + + set ExtName "HDU 1" +- loop i 0 $hdu_count { ++ for {set i 0} {$i < $hdu_count} {incr i} { + set hdu [expr {$i + 1}] + set list [lindex $hlist $i] + +diff -Nur skycat-3.1.3.orig/rtd/library/RtdImageHduChooser.tcl skycat-3.1.3/rtd/library/RtdImageHduChooser.tcl +--- skycat-3.1.3.orig/rtd/library/RtdImageHduChooser.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/RtdImageHduChooser.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -16,6 +16,7 @@ + # pbiereic 11/10/08 Break image display loop after failure. + # pbiereic 26/11/08 Using 'view update' for HDU images display. + # Using a toplevel window for the HDU images display. ++package require Tclutil + + itk::usual RtdImageHduChooser {} + +@@ -426,7 +427,7 @@ + + private method svinfo {} { + set list [array get ext_ *NAXIS*] +- loop i 0 [llength $list] 2 { ++ for {set i 0} {$i < [llength $list]} {incr i 2} { + lappend newlist "[lindex $list $i] [lindex $list [expr {$i+1}]]" + } + set newlist [lsort -increasing -index 0 $newlist] +diff -Nur skycat-3.1.3.orig/rtd/library/RtdImagePerf.tcl skycat-3.1.3/rtd/library/RtdImagePerf.tcl +--- skycat-3.1.3.orig/rtd/library/RtdImagePerf.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/RtdImagePerf.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -9,6 +9,7 @@ + # D. Hopkinson 31 Jan 97 Created + # P.Biereichel 21/07/97 % display is the default + some bug fixes + # P.Biereichel 01/03/01 Only % display suported + code revised ++package require Tclutil + + itk::usual RtdImagePerf {} + +diff -Nur skycat-3.1.3.orig/rtd/library/RtdImagePick2.tcl skycat-3.1.3/rtd/library/RtdImagePick2.tcl +--- skycat-3.1.3.orig/rtd/library/RtdImagePick2.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/RtdImagePick2.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -62,6 +62,7 @@ + # NOTES + # - In contrast to RtdImagePick, RtdImagePick2 does not use tkwait which may + # cause problem for an inheriting class due to nested calls to tkwait. ++package require Tclutil + + itk::usual RtdImagePick2 { } + +@@ -127,7 +128,7 @@ + {Set the magnification factor of the zoom} \ + -menu [menu $magMenu_] + +- loop i 2 31 { ++ for {set i 2} {$i < 31} {incr i} { + $m.mag add radiobutton -label " ${i}x" \ + -command [code $this scaleZoom $i] \ + -variable $magMenu_ +diff -Nur skycat-3.1.3.orig/rtd/library/RtdInit.tcl skycat-3.1.3/rtd/library/RtdInit.tcl +--- skycat-3.1.3.orig/rtd/library/RtdInit.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/RtdInit.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -10,7 +10,7 @@ + # -------- --------- ---------------------------------------------- + # pbiereic 24/08/99 created + +-if {![lcontain $auto_path $rtd_library]} { ++if { $auto_path ni $rtd_library} { + lappend auto_path $rtd_library + } + +diff -Nur skycat-3.1.3.orig/rtd/library/Rtd.tcl skycat-3.1.3/rtd/library/Rtd.tcl +--- skycat-3.1.3.orig/rtd/library/Rtd.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/Rtd.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -650,7 +650,7 @@ + set t6 "Tcl version:\t[info patchlevel]" + set t7 "Tcl package path:\t$tcl_pkgPath" + set t8 "Package versions:\t" +- foreach el "Tclx Itcl Itk Tkx BLT" { ++ foreach el "Itcl Itk BLT" { + set t8 "$t8$el[package versions $el] " + } + DialogWidget $w_.rtd_about \ +diff -Nur skycat-3.1.3.orig/rtd/library/tRtd.tcl skycat-3.1.3/rtd/library/tRtd.tcl +--- skycat-3.1.3.orig/rtd/library/tRtd.tcl 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/library/tRtd.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -10,6 +10,7 @@ + # who when what + # -------------- --------- ---------------------------------------- + # pbiereic 01/03/01 Created ++package require Tclutil + + itk::usual tRtd {} + +diff -Nur skycat-3.1.3.orig/rtd/util/rmipc.tcl skycat-3.1.3/rtd/util/rmipc.tcl +--- skycat-3.1.3.orig/rtd/util/rmipc.tcl 2017-08-10 16:18:22.130000000 +0000 ++++ skycat-3.1.3/rtd/util/rmipc.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -20,7 +20,7 @@ + } + set f [open "|ipcs $opt"] + while {[gets $f line] != -1} { +- if { ![lcontain $line $env(USER)]} { continue } ++ if { $line ni $env(USER) } { continue } + set num [lindex $line 1] + if {![catch {expr $num}]} { + if {[catch {exec ipcrm $opt $num} msg]} { +diff -Nur skycat-3.1.3.orig/skycat/library/SkycatInit.tcl skycat-3.1.3/skycat/library/SkycatInit.tcl +--- skycat-3.1.3.orig/skycat/library/SkycatInit.tcl 2017-08-10 16:18:22.130000000 +0000 ++++ skycat-3.1.3/skycat/library/SkycatInit.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -12,9 +12,11 @@ + + package require img::xpm + +-if {![lcontain $auto_path $skycat_library]} { ++if { $auto_path ni $skycat_library } { + lappend auto_path $skycat_library + } + + namespace eval skycat {namespace export *} + namespace import -force skycat::* ++namespace import ::tcl::mathfunc::max ++namespace import ::tcl::mathfunc::min +diff -Nur skycat-3.1.3.orig/tclutil/library/Batch.tcl skycat-3.1.3/tclutil/library/Batch.tcl +--- skycat-3.1.3.orig/tclutil/library/Batch.tcl 2017-08-10 16:18:22.130000000 +0000 ++++ skycat-3.1.3/tclutil/library/Batch.tcl 2017-08-10 17:40:54.160000000 +0000 +@@ -15,6 +15,8 @@ + # -------- --------- ---------------------------------------------- + # A.Brighton 20 Dec 95 created + ++package require Expect ++ + itk::usual Batch {} + + # This class is used to evaluate a set of Tcl commands in a separate +@@ -55,7 +57,7 @@ + } + flush stdout + flush stderr +- pipe rfd wfd ++ lassign [chan pipe] rfd wfd + set pid [fork] + if {$pid == 0} { + # child +@@ -65,7 +67,7 @@ + close $fd + puts $wfd $status + close $wfd +- kill [pid] ++ kill [pid] 9 + } else { + set bg_pid_ $pid + fileevent $rfd readable [code $this read_pipe $rfd $wfd] +diff -Nur skycat-3.1.3.orig/tclutil/library/canvastext.tcl skycat-3.1.3/tclutil/library/canvastext.tcl +--- skycat-3.1.3.orig/tclutil/library/canvastext.tcl 2017-08-10 16:18:22.130000000 +0000 ++++ skycat-3.1.3/tclutil/library/canvastext.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -21,7 +21,7 @@ + proc ct_search_forward_char {canvas item char} { + if {![lempty $item]} { + set text [lindex [$canvas itemconfigure $item -text] 4] +- loop i [$canvas index $item insert] [$canvas index $item end] { ++ for {set i [$canvas index $item insert]} {$i < [$canvas index $item end]} {incr i} { + if {$char == [string index $text $i]} { + return $i + } +@@ -37,7 +37,7 @@ + proc ct_search_backward_char {canvas item char} { + if {![lempty $item]} { + set text [lindex [$canvas itemconfigure $item -text] 4] +- loop i [expr {[$canvas index $item insert] - 1}] 0 -1 { ++ for {set i [expr {[$canvas index $item insert] - 1}]} {$i > 0} {decr i} { + if {$char == [string index $text $i]} { + return $i + } +diff -Nur skycat-3.1.3.orig/tclutil/library/itcldoc.tcl skycat-3.1.3/tclutil/library/itcldoc.tcl +--- skycat-3.1.3.orig/tclutil/library/itcldoc.tcl 2017-08-10 16:18:22.130000000 +0000 ++++ skycat-3.1.3/tclutil/library/itcldoc.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -36,7 +36,6 @@ + # A.Brighton 07 Jan 98 created + + package require Itcl +-package require Tclx + + itcl::class ItclDoc { + +diff -Nur skycat-3.1.3.orig/tclutil/library/list.tcl skycat-3.1.3/tclutil/library/list.tcl +--- skycat-3.1.3.orig/tclutil/library/list.tcl 2017-08-10 16:18:22.130000000 +0000 ++++ skycat-3.1.3/tclutil/library/list.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -50,3 +50,9 @@ + } + return $l + } ++ ++proc lempty {list} { ++ if {[catch {llength $list} len]} { return 0 } ++ return [expr {$len == 0}] ++} ++ +diff -Nur skycat-3.1.3.orig/tclutil/library/TclutilInit.tcl skycat-3.1.3/tclutil/library/TclutilInit.tcl +--- skycat-3.1.3.orig/tclutil/library/TclutilInit.tcl 2017-08-10 16:18:22.130000000 +0000 ++++ skycat-3.1.3/tclutil/library/TclutilInit.tcl 2017-08-10 17:38:25.850000000 +0000 +@@ -16,9 +16,8 @@ + + package require Itcl + package require Itk +-package require Tclx + +-if {![lcontain $auto_path $tclutil_library]} { ++if {$auto_path ni $tclutil_library} { + lappend auto_path $tclutil_library + } + diff --git a/sci-astronomy/skycat/files/skycat-3.1.3-string-issues.patch b/sci-astronomy/skycat/files/skycat-3.1.3-string-issues.patch new file mode 100644 index 000000000000..f3e62572a133 --- /dev/null +++ b/sci-astronomy/skycat/files/skycat-3.1.3-string-issues.patch @@ -0,0 +1,57 @@ +diff -Nur skycat-3.1.3.orig/cat/generic/TclAstroCat.C skycat-3.1.3/cat/generic/TclAstroCat.C +--- skycat-3.1.3.orig/cat/generic/TclAstroCat.C 2017-08-10 16:18:22.110000000 +0000 ++++ skycat-3.1.3/cat/generic/TclAstroCat.C 2017-08-10 18:06:22.660000000 +0000 +@@ -75,7 +75,7 @@ + */ + static class TclAstroCatSubCmds { + public: +- char* name; // method name ++ const char* name; // method name + int (TclAstroCat::*fptr)(int argc, char* argv[]); + int min_args; // minimum number of args + int max_args; // maximum number of args +diff -Nur skycat-3.1.3.orig/rtd/generic/BiasData.C skycat-3.1.3/rtd/generic/BiasData.C +--- skycat-3.1.3.orig/rtd/generic/BiasData.C 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/generic/BiasData.C 2017-08-10 18:05:35.520000000 +0000 +@@ -76,7 +76,7 @@ + char* BiasData::file(int nr) + { + if (nr < 0 || nr >=MAXBIAS) +- return '\0'; ++ return ""; + return &files_[nr][0]; + } + +diff -Nur skycat-3.1.3.orig/rtd/generic/RtdPerf.C skycat-3.1.3/rtd/generic/RtdPerf.C +--- skycat-3.1.3.orig/rtd/generic/RtdPerf.C 2017-08-10 16:18:22.120000000 +0000 ++++ skycat-3.1.3/rtd/generic/RtdPerf.C 2017-08-10 18:05:35.520000000 +0000 +@@ -226,18 +226,18 @@ + accGENtime_ = accTCLtime_ = accXtime_ = accFREQtime_ = 0.0; + + // Clear the Tcl variables. +- Tcl_SetVar2(interp_, var, "PERF_COUNT", '\0', TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_COUNT", "", TCL_GLOBAL_ONLY); + +- Tcl_SetVar2(interp_, var, "PERF_FREQ", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_GEN", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_XFUNC", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_TCL", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_TOTAL", '\0', TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_FREQ", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_GEN", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_XFUNC", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_TCL", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_TOTAL", "", TCL_GLOBAL_ONLY); + +- Tcl_SetVar2(interp_, var, "PERF_FREQ_AVE", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_GEN_AVE", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_XFUNC_AVE", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_TCL_AVE", '\0', TCL_GLOBAL_ONLY); +- Tcl_SetVar2(interp_, var, "PERF_TOTAL_AVE", '\0', TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_FREQ_AVE", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_GEN_AVE", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_XFUNC_AVE", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_TCL_AVE", "", TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp_, var, "PERF_TOTAL_AVE", "", TCL_GLOBAL_ONLY); + } + diff --git a/sci-astronomy/skycat/metadata.xml b/sci-astronomy/skycat/metadata.xml new file mode 100644 index 000000000000..6f23b504ba45 --- /dev/null +++ b/sci-astronomy/skycat/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + SkyCat is a tool that combines visualization of images and access + to catalogs and archive data for astronomy. It was developed at + the European Southern Observatory. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/skycat/skycat-3.1.2-r2.ebuild b/sci-astronomy/skycat/skycat-3.1.2-r2.ebuild new file mode 100644 index 000000000000..6d1350d0d559 --- /dev/null +++ b/sci-astronomy/skycat/skycat-3.1.2-r2.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 +inherit autotools flag-o-matic + +DESCRIPTION="ESO astronomical image visualizer with catalog access" +HOMEPAGE="http://archive.eso.org/skycat" +SRC_URI="http://archive.eso.org/cms/tools-documentation/skycat-download/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="threads" + +DEPEND="x11-libs/libXext + >=dev-tcltk/tclx-2.4 + >=dev-tcltk/blt-2.4 + >=dev-tcltk/itcl-3.3 + >=dev-tcltk/iwidgets-4.0.1 + >=dev-tcltk/tkimg-1.3 + sci-libs/cfitsio + sci-astronomy/wcstools" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${P}-m4.patch # fix buggy tcl.m4 for bash3 and add soname + "${FILESDIR}"/${P}-makefile-qa.patch + "${FILESDIR}"/${PN}-3.0.2-systemlibs.patch # use system libs + "${FILESDIR}"/${PN}-3.0.2-tk8.5.patch # need fix for tk-8.5 +) + +src_prepare() { + default + rm -fr astrotcl/{cfitsio,libwcs} \ + || die "Failed to remove included libs" + # prefix it + sed -i \ + -e "s:/usr:${EPREFIX}/usr:g" \ + */configure.in */aclocal.m4 || die + local f + for f in configure.in */configure.in ; do + mv "$f" "${f/.in/.ac}" || die + done + eautoreconf +} + +src_configure() { + append-cppflags -DUSE_INTERP_RESULT # 514604 + econf $(use_enable threads) --enable-merge +} + +src_install() { + default + local d f + for d in tclutil astrotcl rtd cat skycat; do + for f in README CHANGES VERSION; do + newdoc ${f} ${f}.${d} + done + done +} diff --git a/sci-astronomy/skycat/skycat-3.1.3.ebuild b/sci-astronomy/skycat/skycat-3.1.3.ebuild new file mode 100644 index 000000000000..4ade8b0c438b --- /dev/null +++ b/sci-astronomy/skycat/skycat-3.1.3.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools flag-o-matic + +DESCRIPTION="ESO astronomical image visualizer with catalog access" +HOMEPAGE="http://archive.eso.org/skycat" +SRC_URI="http://archive.eso.org/cms/tools-documentation/skycat-download/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="threads" + +DEPEND=" + dev-tcltk/blt:= + dev-tcltk/expect:= + dev-tcltk/itcl:= + dev-tcltk/iwidgets:= + dev-tcltk/tkimg:= + sci-astronomy/wcstools:= + sci-libs/cfitsio:= + x11-libs/libXext:= +" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-3.1.3-string-issues.patch + "${FILESDIR}"/${PN}-3.1.3-remove-tclx-dep.patch + "${FILESDIR}"/${PN}-3.1.2-m4.patch + "${FILESDIR}"/${PN}-3.1.2-makefile-qa.patch + "${FILESDIR}"/${PN}-3.0.2-systemlibs.patch + "${FILESDIR}"/${PN}-3.0.2-tk8.5.patch +) + +src_prepare() { + default + rm -r astrotcl/{cfitsio,libwcs} || die + # prefix it + sed -e "s:/usr:${EPREFIX}/usr:g" \ + -i */configure.in */aclocal.m4 || die + local f + for f in configure.in */configure.in ; do + mv "$f" "${f/.in/.ac}" || die + done + # bug #626162 . lazy sed to avoid a big patch + sed -i -e 's/static char/static unsigned char/g' $(find . -name \*.xbm) || die + eautoreconf +} + +src_configure() { + # bug #514604 + append-cppflags -DUSE_INTERP_RESULT + econf $(use_enable threads) --enable-merge +} + +src_install() { + default + local d f + for d in tclutil astrotcl rtd cat skycat; do + for f in README CHANGES VERSION; do + newdoc ${f} ${f}.${d} + done + done +} diff --git a/sci-astronomy/skymaker/Manifest b/sci-astronomy/skymaker/Manifest new file mode 100644 index 000000000000..1fbe463c47f1 --- /dev/null +++ b/sci-astronomy/skymaker/Manifest @@ -0,0 +1,4 @@ +DIST skymaker-3.10.5.tar.gz 508938 SHA256 a16f9c2bd653763b5e1629e538d49f63882c46291b479b4a4997de84d8e9fb0f SHA512 98bb5a75c21475c6ecf16cb7de333db7faae95fd32c4ac311b44ddf637ffec2c80061b056b070b8d21b1a5a46c0a5a82855e417d25a9d8de02aad2167cb45b43 WHIRLPOOL 485cf8ad6b38b3ec3c5b9544b5c98ffcd24f485630c1228a8a95ef62b3c2b1618aea16cd6ee222cd89ae2080d313dc55eb88aebd2eaadc61b7e378d12bf66fe8 +EBUILD skymaker-3.10.5.ebuild 478 SHA256 d9442858bc1317b490ed24e1775d70b86ff46782971de89ae74868179e94cde5 SHA512 8b5718b7f30c6ee93cd100085db033c9f3f348b71596cc768d7002cf4e46f7a872ac280472b10d788cfe2bfde8e55b7205f974c753060136bdcfc2ed76de75c4 WHIRLPOOL 1e9e0543b908677eae87fb3d1cd93beea0daf6508191a8a9ea7d9cb17e63603262562a4a0278326041d3c8c3340f9480caa18b59f22fd808be9e0dfa1561588c +MISC ChangeLog 324 SHA256 88e4c6c06e02824e6abcf9bc1e24f7a7016a9e3a6479c069353bc31b8e777162 SHA512 b33f4f60c172f49423e22bc9c883254c474381daea38c78eb8c1d2a52ec6da12b07f420830010240ff3dde897b0fc378a01afac70ed8f44fcaeb5eb4dd61cd9b WHIRLPOOL 11c42af325d37e85ef94e1384b28b3f9afdc466d0ea9f22efb40e47e25844b514cea61d1dc6c8ecae153d497908f9d9fe4f20a394d953e2515d265c56d74bcce +MISC metadata.xml 637 SHA256 21b806df0aa7d6837980f697ea1f0a0aca490f42ccd13b56bc4c3a6d7a92e0c1 SHA512 e51f32c21e60a358885cf7255be65b124388a4c753738578237d1d4b2d527e3d3d4e7fb2310e13d65f219293b7329281a343e021551dd4648162476b37c126fa WHIRLPOOL 52c65b82b0f722c94a05852b16aab74513f4cc3bab6977d1601db8d7e32662a06e2a0eff8a08a2ecb52eb416a2dee5160dc38db6358f47e47297368538bf1a97 diff --git a/sci-astronomy/skymaker/metadata.xml b/sci-astronomy/skymaker/metadata.xml new file mode 100644 index 000000000000..a5fb716028ef --- /dev/null +++ b/sci-astronomy/skymaker/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + SkyMaker is a program that simulates astronomical images. It accepts + object lists in ASCII generated by the Stuff program to produce + realistic astronomical fields. There are various options for the user: + build a realistic Point Spread Function, generate a list of stars and + galaxies. Galaxies are modeled analytically. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/skymaker/skymaker-3.10.5.ebuild b/sci-astronomy/skymaker/skymaker-3.10.5.ebuild new file mode 100644 index 000000000000..da9788d145b4 --- /dev/null +++ b/sci-astronomy/skymaker/skymaker-3.10.5.ebuild @@ -0,0 +1,20 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Program that simulates astronomical images" +HOMEPAGE="http://www.astromatic.net/software/skymaker" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" +IUSE="threads" + +RDEPEND="sci-libs/fftw:3.0" +DEPEND="${RDEPEND}" + +src_configure() { + econf $(use_enable threads) +} diff --git a/sci-astronomy/sofa_c/Manifest b/sci-astronomy/sofa_c/Manifest new file mode 100644 index 000000000000..0d519240be37 --- /dev/null +++ b/sci-astronomy/sofa_c/Manifest @@ -0,0 +1,10 @@ +AUX sofa_c-makefile.patch 3345 SHA256 2b605d5829419b49ee79acc9e583eecbde5b7eea429499ddf98fc18a8d4bb726 SHA512 a38248d3912ef68aecbc2ed1b28181378b2c92a470b1447865f1cf9d9475f7fbc584ff1bcf7184e563f298b72b0284c81e4b905757208459cebb9b7cb4dbc26b WHIRLPOOL b9d4509037d514ef67e3230aabbeded48cc86897798d0fc560bea7353afb3bc9c90d5b56c5af445a9d40267721da6c3a9457f17ce0890a557e02e7ac4359229d +DIST sofa_c-20150209_a.tar.gz 1685051 SHA256 b542c5e4ca42d91ada3c66e8d5b86eb9dec085bf1a07d058c01920c6c0b1174a SHA512 45524228db30c388315ce76c1d85db422fac09da3c3ed1442e362a6a2b4a10d27c19ea4a2d51c854280102a99706663622e0375b4afbf096b79877e7602fec4c WHIRLPOOL f4b084145cb3b9c2d722885ed89d2b8298d8fa4a21da25778852d76d20342331c3e7e2c6e28b3d0df04bc9bdf6fc921fe0e60f545ca91dcf69fe86316252006f +DIST sofa_c-20160503_c.tar.gz 1720164 SHA256 202608f75ae51b03fad5599d6efd7226f0c5073f9b409a82fddc7e841f165e16 SHA512 d21f02d0669a8707e8b2d34be4f30b4acc222b4155e7b4e4f9fc54bbabf1edc99b49e66619581bc3427eff8ed1d26668aae86af73f63a5fd21eb73f3339e0f26 WHIRLPOOL b4b276cbed394f423eb945fd95a3de27643e445ed58c90f3dd6d8512a469f775b2c0804a2a2bf9c4807d301bcb2714b5eaa961298787d5d3a6aadf1e43809b1b +DIST sofa_c-20170420.tar.gz 1780577 SHA256 2ca0cc584f9420c72aef5a6c2f8551537e5dd5c1b77d7b189e86e6033120e668 SHA512 f2dd806243e3aec51ea03a54e10e533d4c3c1a69d032d5f3ddd7cd823a75aeed8033491c91366813b8d8e5c0b66e0fd582e6ede03aa7b136311fdd7a4ebf20d3 WHIRLPOOL 32cca3f6342a32cfa2e943b79c168bf55504f8a73614a3f1182e4ed8c295ae10a6ea4ed0f283b20854fcf665468b5794fd86c76c014989674ba781dbe29160df +EBUILD sofa_c-20150209a.ebuild 789 SHA256 333ad7d559b93a865d257fde48f61e1db5757177e5442e96d4b812bfbcff1c78 SHA512 8cad3a409c66b7b49391e231eaba775ca1450a7c0edfe28c5f1eed92fa3d0476d324216be7d4770756a2281024137314ed757f09e777783e4b30bd07567dcf59 WHIRLPOOL 6aff8b0c4d4ce653d327b13d65bd54522b1e138f29bc630dec032f7a4e797a68b9294fd2e0f833e88469a8fb200bbe0538fa92a55af88f672427d7a736e622ed +EBUILD sofa_c-20160503c.ebuild 789 SHA256 151ca8312fbbad747bb619bb6cffaaebbaf617855a82ce28eb03b6d65d6308f3 SHA512 9c05d2c19e0d9a7f47652c4a163f1e91a39252516d3c3f27ef5fc72e4a10f120cce14368ac26f2cd85ff62eeb5dd42c965e721e0e6f7db8ce69243b5462e861a WHIRLPOOL 56c6645dc49b11d07d2e7cd9df1fd2bd2138c673667af02037b261f859e89f95a9396925fcbd8b2f6b38c7bcdae6c5b647fc640ce398fec79128df7032c1d936 +EBUILD sofa_c-20170420.ebuild 793 SHA256 c2baab94934c42636a3255fbd6060b3a968cba83067e7037858f85f7572b7076 SHA512 250743503aee1951afa017502c801f6dcd9b901c8db82abe61c70ebe170e26f553dc48d885455906d8e40b47203fc2d7778555ea80b725375ff1507b90126065 WHIRLPOOL 8f773995740af6fe4f0e328bc32fe60803ae8878a2188fc6594f17714736494b0b11932d307b67d161f4380ebd05d137761fb12f8c325be8408636fd39849262 +MISC ChangeLog 2703 SHA256 77f13d7b645c682b30679c22a0939743d8880697a048cc5c4bb973a0a19b5297 SHA512 741094180a78a307472c0950af2245ed641733c137008d8e11906a3abe9a75ae262b55d75973290f0497b95f8b3ab2056fb3b00df809069dc917a47be4d2e90b WHIRLPOOL 4f7e819bdb3a56dd42f48865b7bf58a59cbbfd1a591659ad59bcfabef5fddf357dcf3b988f6ae219e2f0138c449bf37ce37d40a8bbe59ce8a8fbe8115fa91fab +MISC ChangeLog-2015 668 SHA256 972603bb9cc8dbfee84c82e87d091dfdea818889bda160d725872baddacf1cac SHA512 cf738733d900c15b787cc696b6c78c7f13ebc4c146a852605b1f942230641b23dc68ed069b8e881b0f71e1243c58295e9c573f4eda684c92b65140ba8d39df72 WHIRLPOOL 62eb6816b47d42a62c7e4013e3399e714a918b3e2623a10e7e3e508df827c1148b4566aa80091b4b56b289f8a9430bb2c51c9240f0e969fb4a13e9d22b2a210b +MISC metadata.xml 962 SHA256 90743c1461bd8d94d3184f78bd0af2a6a82a2dc09cc11ff60daf707bed021b5e SHA512 6b390092f6c9b2f1ee65e6152f86ca6bc88cd487994ea4d4a6d73bae70eacb4c3f05c203e679ec58e3b63738da313329834ddbda91f94e54f3feb65091dfc119 WHIRLPOOL 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LINE--------- + +@@ -80,6 +80,11 @@ + SOFA_LIB_NAME = libsofa_c.a + SOFA_LIB = $(SOFA_LIB_DIR)$(SOFA_LIB_NAME) + ++# Name the SOFA/C library in its source and target locations. ++ ++SOFA_SHLIB_NAME = libsofa_c.so ++SOFA_SHLIB = $(SOFA_LIB_DIR)$(SOFA_SHLIB_NAME) ++ + # Name the SOFA/C testbed in its source and target locations. + + SOFA_TEST_NAME = t_sofa_c.c +@@ -88,7 +93,7 @@ + # Name the SOFA/C includes in their source and target locations. + + SOFA_INC_NAMES = sofa.h sofam.h +-SOFA_INC = $(SOFA_INC_DIR)sofa.h $(SOFA_INC_DIR)sofam.h ++SOFA_INC = $(SOFA_INC_NAMES:%=$(SOFA_INC_DIR)%) + + # The list of SOFA/C library object files. + +@@ -321,28 +326,31 @@ + #----------------------------------------------------------------------- + + # Build (but do not install) the library. +-all : $(SOFA_LIB_NAME) ++all : $(SOFA_SHLIB_NAME) + -@ echo "" + -@ echo "*** Now type 'make test'" \ + " to install the library and run tests ***" + -@ echo "" + + # Install the library and header files. +-install $(SOFA_LIB) : $(INSTALL_DIRS) $(SOFA_LIB_NAME) $(SOFA_INC) +- cp $(SOFA_LIB_NAME) $(SOFA_LIB_DIR) ++install: $(INSTALL_DIRS) $(SOFA_SHLIB_NAME) $(SOFA_INC) ++ cp $(SOFA_SHLIB_NAME).0.0 $(SOFA_LIB_DIR) ++ ln -s $(SOFA_SHLIB_NAME).0.0 $(SOFA_SHLIB).0 ++ ln -s $(SOFA_SHLIB_NAME).0 $(SOFA_SHLIB) ++ + + # Deinstall the library and header files. + uninstall: +- - $(RM) $(SOFA_LIB) $(SOFA_INC) ++ - $(RM) $(SOFA_LIB) $(SOFA_SHLIB)* $(SOFA_INC) + + # Test the build. +-check: $(SOFA_TEST_NAME) $(SOFA_INC_NAMES) $(SOFA_LIB_NAME) +- $(CCOMPC) $(CFLAGX) $(SOFA_TEST_NAME) $(SOFA_LIB_NAME) \ ++check: $(SOFA_TEST_NAME) $(SOFA_INC_NAMES) $(SOFA_SHLIB_NAME) ++ $(CCOMPC) $(CFLAGX) $(SOFA_TEST_NAME) $(SOFA_SHLIB_NAME).0.0 \ + -lm -o $(SOFA_TEST) +- ./$(SOFA_TEST) ++ LD_LIBRARY_PATH="$${LD_LIBRARY_PATH}:." ./$(SOFA_TEST) + + # Test the installed library. +-installcheck test: $(SOFA_TEST_NAME) $(SOFA_INC) $(SOFA_LIB) ++installcheck: $(SOFA_TEST_NAME) $(SOFA_INC) $(SOFA_LIB) + $(CCOMPC) $(CFLAGX) $(SOFA_TEST_NAME) -I$(SOFA_INC_DIR) \ + -L$(SOFA_LIB_DIR) -lsofa_c -lm -o $(SOFA_TEST) + ./$(SOFA_TEST) +@@ -353,7 +361,7 @@ + + # Delete all generated binaries in the current directory. + realclean distclean : clean +- - $(RM) $(SOFA_LIB_NAME) $(SOFA_TEST) ++ - $(RM) $(SOFA_LIB_NAME) $(SOFA_SHLIB_NAME)* $(SOFA_TEST) + + # Create the installation directories if not already present. + $(INSTALL_DIRS): +@@ -363,6 +371,10 @@ + $(SOFA_LIB_NAME): $(SOFA_OBS) + ar ru $(SOFA_LIB_NAME) $? + ++$(SOFA_SHLIB_NAME): $(SOFA_OBS) ++ $(CC) $(LDFLAGS) -shared -Wl,-soname,$(SOFA_SHLIB_NAME).0 $? -lm -o $(SOFA_SHLIB_NAME).0.0 ++ ln -sfn $(SOFA_SHLIB_NAME).0.0 $(SOFA_SHLIB_NAME).0 ++ + # Install the header files. + $(SOFA_INC) : $(INSTALL_DIRS) $(SOFA_INC_NAMES) + cp $(SOFA_INC_NAMES) $(SOFA_INC_DIR) diff --git a/sci-astronomy/sofa_c/metadata.xml b/sci-astronomy/sofa_c/metadata.xml new file mode 100644 index 000000000000..d8484b69c201 --- /dev/null +++ b/sci-astronomy/sofa_c/metadata.xml @@ -0,0 +1,26 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + This is a suite of vector/matrix routines and various utilities that + underpin the astronomy algorithms, which include routines for the + following: + * Calendars + * Time Scales + * Earth rotation and sidereal time + * Ephemerides (medium precision) + * Geocentric/geodetic transformations + * Precession, nutation, polar motion + * Star space motion + * Star catalogue conversion + This is the ANSI C version of the library. + The International Astronomical Union's SOFA service has the task of + establishing and maintaining an accessible and authoritative set of + algorithms and procedures that implement standard models used in + fundamental astronomy. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/sofa_c/sofa_c-20150209a.ebuild b/sci-astronomy/sofa_c/sofa_c-20150209a.ebuild new file mode 100644 index 000000000000..e145edaa645c --- /dev/null +++ b/sci-astronomy/sofa_c/sofa_c-20150209a.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs + +YYYY=${PV:0:4} +MMDD=${PV:4:4} +MYPV=${YYYY}${MMDD}_${PV:8:1} + +DESCRIPTION="Library for algorithms for models in fundamental astronomy" +HOMEPAGE=" http://www.iausofa.org/current_C.html" +SRC_URI="http://www.iausofa.org/${YYYY}_${MMDD}_C/${PN}-${MYPV}.tar.gz" + +LICENSE="SOFA" +SLOT=0 +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc" + +RDEPEND="" +DEPEND="" + +PATCHES=( "${FILESDIR}/${PN}-makefile.patch" ) + +S="${WORKDIR}/sofa/${MYPV}/c/src" + +src_prepare() { + default + sed -i -e "s:/lib:/$(get_libdir):" makefile || die + tc-export CC +} + +src_install() { + emake DESTDIR="${ED}" install + cd .. + dodoc 00READ.ME + use doc && dodoc doc/*.lis doc/*.pdf +} diff --git a/sci-astronomy/sofa_c/sofa_c-20160503c.ebuild b/sci-astronomy/sofa_c/sofa_c-20160503c.ebuild new file mode 100644 index 000000000000..00b50264fd84 --- /dev/null +++ b/sci-astronomy/sofa_c/sofa_c-20160503c.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs + +YYYY=${PV:0:4} +MMDD=${PV:4:4} +MYPV=${YYYY}${MMDD}_${PV:8:1} + +DESCRIPTION="Library for algorithms for models in fundamental astronomy" +HOMEPAGE=" http://www.iausofa.org/current_C.html" +SRC_URI="http://www.iausofa.org/${YYYY}_${MMDD}_C/${PN}-${MYPV}.tar.gz" + +LICENSE="SOFA" +SLOT=0 +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc" + +RDEPEND="" +DEPEND="" + +PATCHES=( "${FILESDIR}"/${PN}-makefile.patch ) + +S="${WORKDIR}/sofa/${MYPV}/c/src" + +src_prepare() { + default + sed -i -e "s:/lib:/$(get_libdir):" makefile || die + tc-export CC +} + +src_install() { + emake DESTDIR="${ED}" install + cd .. + dodoc 00READ.ME + use doc && dodoc doc/*.lis doc/*.pdf +} diff --git a/sci-astronomy/sofa_c/sofa_c-20170420.ebuild b/sci-astronomy/sofa_c/sofa_c-20170420.ebuild new file mode 100644 index 000000000000..d8382b0d7524 --- /dev/null +++ b/sci-astronomy/sofa_c/sofa_c-20170420.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs + +YYYY=${PV:0:4} +MMDD=${PV:4:4} +#PP=${PV:8:1} +MYPV=${YYYY}${MMDD} + +DESCRIPTION="Library for algorithms for models in fundamental astronomy" +HOMEPAGE=" http://www.iausofa.org/current_C.html" +SRC_URI="http://www.iausofa.org/${YYYY}_${MMDD}_C/${PN}-${MYPV}.tar.gz" + +LICENSE="SOFA" +SLOT=0 +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc" + +RDEPEND="" +DEPEND="" + +PATCHES=( "${FILESDIR}"/${PN}-makefile.patch ) + +S="${WORKDIR}/sofa/${MYPV}/c/src" + +src_prepare() { + default + sed -i -e "s:/lib:/$(get_libdir):" makefile || die + tc-export CC +} + +src_install() { + emake DESTDIR="${ED}" install + cd .. + dodoc 00READ.ME + use doc && dodoc doc/*.lis doc/*.pdf +} diff --git a/sci-astronomy/stellarium/Manifest b/sci-astronomy/stellarium/Manifest new file mode 100644 index 000000000000..32f36f821ea6 --- /dev/null +++ b/sci-astronomy/stellarium/Manifest @@ -0,0 +1,13 @@ +DIST stars_4_1v0_1.cat 17040932 SHA256 7a2084e5e45610bbffae9448d9552d8a8dd191e5b1a07b0e47d27622fab4a979 SHA512 adf2241d0a8b58eb6b8ad5f885dd8a3a66610a63ae949f17f26e81f1ac8d1094d77879e361a0de3929e0d447b0de77142e0c7de0f1f123bd145e130fbfbe0f9a WHIRLPOOL 36267ddb117ed5100bb491760ec5589f8752bf0c655f45e78f7aad500f00d6dae1fdadd1af5d7663b81b8c2df4afed7cd07c652e056391beb531639739bd866c +DIST stars_5_2v0_1.cat 42580300 SHA256 c4ebd18d05a805308cfac85fe224e3f0a75db6579cae65c935a0954da13f4164 SHA512 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eaff80eed27e4d784d7cae37b0127bfcb1f7d7a3f48709cbd9b57e72f68e20d3d8458390f3f587f3881c17da176cc29045b8cef77ae94ee744ef754363ccc964 WHIRLPOOL 94d297bd0e770272aad1cc4c3d3f5d775627c870d19892207ee78dc4292d084825e355564a6488af110586d52fa8788e809d7b656bb80ba98cb6df56a73681f9 +MISC metadata.xml 894 SHA256 139dc9b4ae8bb8fe8934f88a3952c5151ca77268d867d4d53d03cd6a0c6bd1cd SHA512 45213563f8582d0dcf921f8541732d96b8a8ac1d8ba885290c7d455408bc7d0f21444ce058fc4c0dd69cca716006bdcda51cbd95b8b933f264bec42b05609cd8 WHIRLPOOL 6ec942aa47cef37eded2e19fc507c66f53970a59b3d4bc73870559fadc5e5d19b56de5e709e76b0439c86bcf346c18f56e48f48a939e12b3b7181ad29f6c86c0 diff --git a/sci-astronomy/stellarium/metadata.xml b/sci-astronomy/stellarium/metadata.xml new file mode 100644 index 000000000000..747986196368 --- /dev/null +++ b/sci-astronomy/stellarium/metadata.xml @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mr_bones_@gentoo.org</email> + </maintainer> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + Stellarium is a free open source planetarium for your computer. It + shows a realistic sky in 3D, just like what you see with the naked + eye, binoculars or a telescope. It is being used in planetarium + projectors. +</longdescription> + <use> + <flag name="media">Enable sound and video support</flag> + <flag name="stars">Install extra star catalogs</flag> + <flag name="sound">Enable sound support</flag> + </use> + <upstream> + <remote-id type="sourceforge">stellarium</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-astronomy/stellarium/stellarium-0.14.3.ebuild b/sci-astronomy/stellarium/stellarium-0.14.3.ebuild new file mode 100644 index 000000000000..99024e906021 --- /dev/null +++ b/sci-astronomy/stellarium/stellarium-0.14.3.ebuild @@ -0,0 +1,106 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 +inherit cmake-utils eutils flag-o-matic gnome2-utils + +DESCRIPTION="3D photo-realistic skies in real time" +HOMEPAGE="http://www.stellarium.org/" +SRC_URI=" + mirror://sourceforge/stellarium/${P}.tar.gz + stars? ( + mirror://sourceforge/stellarium/stars_4_1v0_1.cat + mirror://sourceforge/stellarium/stars_5_2v0_1.cat + mirror://sourceforge/stellarium/stars_6_2v0_1.cat + mirror://sourceforge/stellarium/stars_7_2v0_1.cat + mirror://sourceforge/stellarium/stars_8_2v0_1.cat + )" + +LICENSE="GPL-2+" +SLOT="0" +KEYWORDS="amd64 ppc ppc64 x86 ~amd64-linux ~x86-linux" +IUSE="debug nls sound stars" + +RESTRICT="test" + +RDEPEND=" + media-fonts/dejavu + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qtopengl:5 + dev-qt/qtscript:5 + dev-qt/qtnetwork:5 + dev-qt/qtwidgets:5 + virtual/opengl + sys-libs/zlib + sound? ( dev-qt/qtmultimedia:5[widgets] )" +DEPEND="${RDEPEND} + dev-qt/qttest:5 + dev-qt/qtconcurrent:5 + nls? ( dev-qt/linguist-tools:5 )" + +LANGS=( + af ak am ar as ast az be bg bn bo br bs ca cs + cy da de el en en_CA en_GB en_US eo es et eu fa fi fil fr + ga gd gl gu he hi hr hu hy ia id is it ja ka kk kn ko ky + la lb lo lt lv mk ml mn mr ms mt nan nb nl nn oc pa pl pt pt_BR ro + ru se si sk sl sq sr sv sw ta te tg th tl tr tt uk uz vi + zh_CN zh_HK zh_TW zu + ) + +for X in "${LANGS[@]}" ; do + IUSE+=" linguas_${X}" +done + +src_prepare() { + if [[ -n ${LINGUAS} ]] ; then + sed -i \ + -e '/aa ab ae/d' \ + -e "/GETTEXT_CREATE_TRANSLATIONS/a \ ${LINGUAS}" \ + po/stellarium{,-skycultures}/CMakeLists.txt || die #403647 + fi + # Turn off TelescopeControl since dev-qt/qtserialport isn't + # marked stable and is missing keywords besides. + sed -i \ + -e '/SimpleDrawLine/ s:0:1:g' \ + -e '/TelescopeControl/s:1:0:g' \ + CMakeLists.txt || die + sed -i -e '/stellarium Core/s/SerialPort//' src/CMakeLists.txt || die + use debug || append-cppflags -DQT_NO_DEBUG #415769 +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable nls) + $(cmake-utils_use_enable sound) + ) + CMAKE_IN_SOURCE_BUILD=1 cmake-utils_src_configure +} + +src_install() { + DOCS="AUTHORS ChangeLog README" \ + cmake-utils_src_install + + # use the more up-to-date system fonts + rm "${ED}"/usr/share/stellarium/data/DejaVuSans{Mono,}.ttf || die + dosym ../../fonts/dejavu/DejaVuSans.ttf /usr/share/stellarium/data/DejaVuSans.ttf + dosym ../../fonts/dejavu/DejaVuSansMono.ttf /usr/share/stellarium/data/DejaVuSansMono.ttf + + if use stars ; then + insinto /usr/share/${PN}/stars/default + doins "${DISTDIR}"/stars_{4_1,{5,6,7,8}_2}v0_1.cat + fi + newicon doc/images/stellarium-logo.png ${PN}.png +} + +pkg_preinst() { + gnome2_icon_savelist +} + +pkg_postinst() { + gnome2_icon_cache_update +} + +pkg_postrm() { + gnome2_icon_cache_update +} diff --git a/sci-astronomy/stellarium/stellarium-0.16.0-r1.ebuild b/sci-astronomy/stellarium/stellarium-0.16.0-r1.ebuild new file mode 100644 index 000000000000..82634b69b2e6 --- /dev/null +++ b/sci-astronomy/stellarium/stellarium-0.16.0-r1.ebuild @@ -0,0 +1,111 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 +inherit cmake-utils eutils flag-o-matic gnome2-utils l10n + +DESCRIPTION="3D photo-realistic skies in real time" +HOMEPAGE="http://www.stellarium.org/" +SRC_URI=" + mirror://sourceforge/stellarium/${P}.tar.gz + stars? ( + mirror://sourceforge/stellarium/stars_4_1v0_1.cat + mirror://sourceforge/stellarium/stars_5_2v0_1.cat + mirror://sourceforge/stellarium/stars_6_2v0_1.cat + mirror://sourceforge/stellarium/stars_7_2v0_1.cat + mirror://sourceforge/stellarium/stars_8_2v0_1.cat + )" + +LICENSE="GPL-2+" +SLOT="0" +KEYWORDS="~amd64 ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="debug gps media nls stars" + +RESTRICT="test" # There are no tests + +RDEPEND=" + media-fonts/dejavu + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qtopengl:5 + dev-qt/qtscript:5 + dev-qt/qtnetwork:5 + dev-qt/qtprintsupport:5 + dev-qt/qtserialport:5 + dev-qt/qtwidgets:5 + virtual/opengl + sys-libs/zlib + media? ( dev-qt/qtmultimedia:5[widgets] ) + gps? ( dev-qt/qtpositioning:5 ) +" +DEPEND="${RDEPEND} + dev-qt/qttest:5 + dev-qt/qtconcurrent:5 + nls? ( dev-qt/linguist-tools:5 )" + +LANGS=( + af am ar as ast az be bg bn bo br bs ca cs + cy da de el en en-GB en-US eo es et eu fa fi fil fr + ga gd gl gu he hi hr hu hy ia id is it ja ka kk kn ko ky + la lb lo lt lv mk ml mn mr ms nb nl nn oc pa pl pt pt-BR ro + ru se si sk sl sq sr sv sw ta te tg th tl tr tt uk uz vi + zh-CN zh-HK zh-TW zu + ) + +for X in "${LANGS[@]}" ; do + IUSE+=" l10n_${X}" +done +unset X + +src_prepare() { + cmake-utils_src_prepare + if [[ -n ${L10N} ]] ; then + local d + for d in po/* ; do + [[ -e ${d}/CMakeLists.txt ]] || continue + local l loc="" + for l in ${L10N//-/_}; do + [[ -e ${d}/${l}.po ]] && loc="${loc} ${l}" + done + sed -e 's/STRING(REGEX REPLACE ".po" "" \([a-z]*\).*$/SET(\1 '"${loc})/" \ + -i ${d}/CMakeLists.txt || die + done + fi + use debug || append-cppflags -DQT_NO_DEBUG #415769 +} + +src_configure() { + local mycmakeargs=( + -DENABLE_GPS="$(usex gps)" + -DENABLE_NLS="$(usex nls)" + -DENABLE_MEDIA="$(usex media)" + ) + cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + + # use the more up-to-date system fonts + rm "${ED%/}"/usr/share/stellarium/data/DejaVuSans{Mono,}.ttf || die + dosym ../../fonts/dejavu/DejaVuSans.ttf /usr/share/stellarium/data/DejaVuSans.ttf + dosym ../../fonts/dejavu/DejaVuSansMono.ttf /usr/share/stellarium/data/DejaVuSansMono.ttf + + if use stars ; then + insinto /usr/share/${PN}/stars/default + doins "${DISTDIR}"/stars_{4_1,{5,6,7,8}_2}v0_1.cat + fi + newicon doc/images/stellarium-logo.png ${PN}.png +} + +pkg_preinst() { + gnome2_icon_savelist +} + +pkg_postinst() { + gnome2_icon_cache_update +} + +pkg_postrm() { + gnome2_icon_cache_update +} diff --git a/sci-astronomy/stellarium/stellarium-0.16.0.ebuild b/sci-astronomy/stellarium/stellarium-0.16.0.ebuild new file mode 100644 index 000000000000..55c9473a146b --- /dev/null +++ b/sci-astronomy/stellarium/stellarium-0.16.0.ebuild @@ -0,0 +1,110 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 +inherit cmake-utils eutils flag-o-matic gnome2-utils l10n + +DESCRIPTION="3D photo-realistic skies in real time" +HOMEPAGE="http://www.stellarium.org/" +SRC_URI=" + mirror://sourceforge/stellarium/${P}.tar.gz + stars? ( + mirror://sourceforge/stellarium/stars_4_1v0_1.cat + mirror://sourceforge/stellarium/stars_5_2v0_1.cat + mirror://sourceforge/stellarium/stars_6_2v0_1.cat + mirror://sourceforge/stellarium/stars_7_2v0_1.cat + mirror://sourceforge/stellarium/stars_8_2v0_1.cat + )" + +LICENSE="GPL-2+" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="debug media nls stars" + +RESTRICT="test" # There are no tests + +RDEPEND=" + media-fonts/dejavu + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qtopengl:5 + dev-qt/qtscript:5 + dev-qt/qtnetwork:5 + dev-qt/qtprintsupport:5 + dev-qt/qtwidgets:5 + virtual/opengl + sys-libs/zlib + media? ( dev-qt/qtmultimedia:5[widgets] ) +" +DEPEND="${RDEPEND} + dev-qt/qttest:5 + dev-qt/qtconcurrent:5 + nls? ( dev-qt/linguist-tools:5 )" + +LANGS=( + af am ar as ast az be bg bn bo br bs ca cs + cy da de el en en-GB en-US eo es et eu fa fi fil fr + ga gd gl gu he hi hr hu hy ia id is it ja ka kk kn ko ky + la lb lo lt lv mk ml mn mr ms nb nl nn oc pa pl pt pt-BR ro + ru se si sk sl sq sr sv sw ta te tg th tl tr tt uk uz vi + zh-CN zh-HK zh-TW zu + ) + +for X in "${LANGS[@]}" ; do + IUSE+=" l10n_${X}" +done +unset X + +src_prepare() { + cmake-utils_src_prepare + if [[ -n ${L10N} ]] ; then + local d + for d in po/* ; do + [[ -e ${d}/CMakeLists.txt ]] || continue + local l loc="" + for l in ${L10N//-/_}; do + [[ -e ${d}/${l}.po ]] && loc="${loc} ${l}" + done + sed -e 's/STRING(REGEX REPLACE ".po" "" \([a-z]*\).*$/SET(\1 '"${loc})/" \ + -i ${d}/CMakeLists.txt || die + done + fi + sed -i -e '/ADD_PLUGIN(TelescopeControl 1)/s/1/0/' CMakeLists.txt || die + use debug || append-cppflags -DQT_NO_DEBUG #415769 +} + +src_configure() { + local mycmakeargs=( + -DENABLE_GPS=OFF + -DENABLE_NLS="$(usex nls)" + -DENABLE_MEDIA="$(usex media)" + ) + cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + + # use the more up-to-date system fonts + rm "${ED%/}"/usr/share/stellarium/data/DejaVuSans{Mono,}.ttf || die + dosym ../../fonts/dejavu/DejaVuSans.ttf /usr/share/stellarium/data/DejaVuSans.ttf + dosym ../../fonts/dejavu/DejaVuSansMono.ttf /usr/share/stellarium/data/DejaVuSansMono.ttf + + if use stars ; then + insinto /usr/share/${PN}/stars/default + doins "${DISTDIR}"/stars_{4_1,{5,6,7,8}_2}v0_1.cat + fi + newicon doc/images/stellarium-logo.png ${PN}.png +} + +pkg_preinst() { + gnome2_icon_savelist +} + +pkg_postinst() { + gnome2_icon_cache_update +} + +pkg_postrm() { + gnome2_icon_cache_update +} diff --git a/sci-astronomy/stiff/Manifest b/sci-astronomy/stiff/Manifest new file mode 100644 index 000000000000..0aa5f494ee93 --- /dev/null +++ b/sci-astronomy/stiff/Manifest @@ -0,0 +1,5 @@ +DIST stiff-2.4.0.tar.gz 1074161 SHA256 f4e85146c17fe8dcf160d12dc6df08bbd9212bb8444162b2e6ebf03f7513a992 SHA512 c8a293a2d1771b21d8af1194f9a2f582eca1a363964e76b78319c9cc2407332ef5e31dc74c0d10b9d5c7b6ae18ebd35ee59c53ad31c5f3966fabcd03948cadf6 WHIRLPOOL aa3b0d4ee6e2fc7d1fd90d19c815985ddb520c3fe37da6ec7c631675f5277b1d75b72a776a64631beedc57b934899c86eebbdc0b7c54925eb153cff65146e805 +EBUILD stiff-2.4.0.ebuild 765 SHA256 3da42b68674454018c39d8fc3f7524beaf2ca1d75a754a836f3df9d9e6dc4a6f SHA512 69e01e360638f8e3dc47d71c97e6147ea05b66354308779fa7a53685b15dce5b5dae92a602c48b4c172a2af0a903a8e715b596543b7fa8e4568aa9f84dd06ff6 WHIRLPOOL b2d543c630e7b267e33a73986a333f88ba8d2c6db1b7f5e9ae6c135199092a41871e674f53763090b11f923c4b78c8c9667b87a373cd09564fe59bc469ed6611 +MISC ChangeLog 2664 SHA256 d68e856ce61a6c94d29779d10ec32aab64791818578057d334c67deb618ed789 SHA512 43f142b3d5ff7b34f2df37280070e054f1eb19176ebc5bfea5cac9c567866abd8491ec39b2e808222f87ad7223ecbeda925fce9d4e28f7831b2772adcdf51e62 WHIRLPOOL 5e1084056c8627c7cc2c0b90281c9ebf72866dc1bb76340aa95ad21d00efd2082276ddf0180a7d72f49da149b56adca0372b7535376bcfdcb9f40980629486f3 +MISC ChangeLog-2015 1562 SHA256 e421cf62bdd254eccac2c3bc66f96c002fc494c2dc670fad1c4651eee14c87e5 SHA512 cb18d0222b78dd927bbc958e8822ffeea94c1ffb1bd33e0cfd92c313aa7e47e85fd0ab011b287c605c79cfa6b3d01054390125aee8850fa49ae5a5051bab60d5 WHIRLPOOL dcb61a06a3d8e83efda80a52888f82a46c88bf1239d0d84605a62f8dda1b5ba8065bb83e8ff0105a833371ea821c3fa4ae5e336a44221cff246c405b6933faaf +MISC metadata.xml 459 SHA256 d2c2da261aff834703ab93a0c51a1190d8cabbe20ad39c0e54eab952de4c6343 SHA512 8094ed0486f4c7916268a2410e14aabc1e5d97f834449bfc61a058ab1b3d42a67bccc205348286420f7025e1bb16cc376024f07fe38ac95ac9e59bd56cdc5360 WHIRLPOOL 6060bb1cedb3a593df272870629776088ed3921b017250accb35fe1caf797736be9661ec3e24fd7e8cdb12450464d274634efca9850ee2c4825575cfd6a5e9e2 diff --git a/sci-astronomy/stiff/metadata.xml b/sci-astronomy/stiff/metadata.xml new file mode 100644 index 000000000000..e2ab38e6c5c9 --- /dev/null +++ b/sci-astronomy/stiff/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + STIFF is a program that convert scientific FITS images to the + more popular TIFF, in 8 (grayscale) or 24 (true colour: 3 times 8) bits per + pixel. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/stiff/stiff-2.4.0.ebuild b/sci-astronomy/stiff/stiff-2.4.0.ebuild new file mode 100644 index 000000000000..f812d640d0df --- /dev/null +++ b/sci-astronomy/stiff/stiff-2.4.0.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +if [[ ${PV} == "9999" ]] ; then + inherit subversion + ESVN_REPO_URI="https://astromatic.net/pubsvn/software/${PN}/trunk" + SRC_URI="" + KEYWORDS="" +else + SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +fi + +DESCRIPTION="Converts astronomical FITS images to the TIFF format" +HOMEPAGE="http://www.astronomatic.net/software/stiff" + +LICENSE="GPL-3" +SLOT="0" +IUSE="doc threads" + +RDEPEND=" + media-libs/tiff:0= + virtual/jpeg:0 + sys-libs/zlib:0=" +DEPEND="${RDEPEND}" + +src_configure() { + ECONF_SOURCE="${S}" econf $(use_enable threads) +} + +src_install () { + default + use doc && dodoc doc/stiff.pdf +} diff --git a/sci-astronomy/stuff/Manifest b/sci-astronomy/stuff/Manifest new file mode 100644 index 000000000000..8a105c4f24ad --- /dev/null +++ b/sci-astronomy/stuff/Manifest @@ -0,0 +1,4 @@ +DIST stuff-1.26.0.tar.gz 4110495 SHA256 55b2e646f80653c09f023c3627c69126a4da5f9d73b30867bce91bb4465cd1eb SHA512 6b71112e29d06807c8fc880bd33032a08810554afa563f27d5af19a45293b780ab0b7827ad84ad7942bed28fe3b03bb6c1fa3983667d1fbcbb467b32653203f2 WHIRLPOOL daf35d1fc1d26cf248d3ebc010a907df860ade582195f3267d8224e362545fa7b96fd9bacd081f06bb9655b0a4a459e36a1263466b504bae6ce32957b6a7f462 +EBUILD stuff-1.26.0.ebuild 471 SHA256 7529736e609ac99a8a101a9c11317c6a95e84d119f1fcdf19b14e3558776d66a SHA512 264e61b267adca3c75b344a81687e5ddf2ea34a4002ec136e45c15d104ea1c781d1d59f24b756c4ff74e55e35e9567c8b577e71921b58e0ecfaf083e7efd150a WHIRLPOOL 382e5e703e675f63a37fc6badcea24146e3ffb73a393b9a69a0bf773fcc4300b40247b4907bd6cf60deb8161c236d0700cde3bb103c1c1bdb1db50cdd0f08de2 +MISC ChangeLog 315 SHA256 d9789c6920e0c8be84e25ac11fe9f526255fef647990252ccb4ab9baa9932db3 SHA512 12a57507c81619f1a20d5255f575d649344fb0701aa7c75c6e6cc3b451e4e8c3155a7794e528415ce4170c0d8d48697d13e1ea8ba8925ab4db55e5b49749fbdf WHIRLPOOL 67ff9868e36b02d6bba832a38751a164193f8810e75d4b99d995e51dc60280c5340041cbee5dd43c7e262a38960419a095cf7f5defd7cea99e5b37bbdba83f22 +MISC metadata.xml 502 SHA256 369d9f296800a795575b41515fec83775ce87de0e021623fe3db2635e4a8c4cc SHA512 8740ddb8ab5a0b859c833d5c5ae39c7f47e1239aeb64b9c306719076974bfed6ae92d28fdbbb59c5ada4343ecebd44c21007bc1d722b038485b10c0a8bd2e786 WHIRLPOOL 733c459c1f55a880bb5ba5dd58a348532dd53aa78ed1473957a13a51feafdd85c9796f92827b2fc3eb7d52db073827895041c89621d0a5d32e7bcb62e0219cbf diff --git a/sci-astronomy/stuff/metadata.xml b/sci-astronomy/stuff/metadata.xml new file mode 100644 index 000000000000..c3150e8cddb3 --- /dev/null +++ b/sci-astronomy/stuff/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Stuff is a program that simulates “perfect” astronomical + catalogues. It generate object lists in ASCII which can read by the + SkyMaker program to produce realistic astronomical fields. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/stuff/stuff-1.26.0.ebuild b/sci-astronomy/stuff/stuff-1.26.0.ebuild new file mode 100644 index 000000000000..cc672651f264 --- /dev/null +++ b/sci-astronomy/stuff/stuff-1.26.0.ebuild @@ -0,0 +1,20 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Tool for automatic generation of astronomical catalogs" +HOMEPAGE="http://www.astromatic.net/software/stuff/" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" +IUSE="threads" + +RDEPEND="" +DEPEND="${RDEPEND}" + +src_configure() { + econf $(use_enable threads) +} diff --git a/sci-astronomy/swarp/Manifest b/sci-astronomy/swarp/Manifest new file mode 100644 index 000000000000..fa54ae759c9a --- /dev/null +++ b/sci-astronomy/swarp/Manifest @@ -0,0 +1,5 @@ +DIST swarp-2.38.0.tar.gz 2063462 SHA256 f54a637f6c17ef2d94f767da641afea9bec726c31501cb828d9b948b1507c7c4 SHA512 80f4ade59738df3d4c9b47bda04148b53c6ba995d523fa8d1e02fb5d952b6078a53cc7d273849a033505de127a4f318b95adf2bf5a2dc38e8cc9bdaf5658487a WHIRLPOOL e328be5011ac0a89858ce7420d57715f2a178012b81f649953f63bbac6ae5a75c86905c01f58c4bc0a2149b41291e3092e40dbfd302667a1fcb7b2aa9688ac40 +EBUILD swarp-2.38.0.ebuild 517 SHA256 2ec776ece03fc7ee7b6b772b80672c9e5e4df7c26906a79cee9fba71a3d3b53b SHA512 dd3ba10ab520b797815457c3c745287716cb2361ad46774e008a770d76279a94520d9f0b413a0ff848f309cee274e34f037cefc7a3e4ae6b277dab966483f192 WHIRLPOOL 85cb2e53a75f221ea5049bd643465f1f2569db9fdb354fab75d43403274edd80aed723108282843269e5ce1b12292f6bf7db556c794b0565111ba2b7cb098ce7 +MISC ChangeLog 2673 SHA256 61fa5850677302e35e43e84cd131dbb00995befe380127574cdaa603f8307156 SHA512 fc93bf0a0b6872d2575074f32457f30fa7d9b0911d2824c8ca1081b00bb9393a5c5cb42a856808bdd9a3ebe3ee797c348776f9d57cd25b913a4b625041601dcf WHIRLPOOL 6e4d1c149d468b97530fc8f436c440de07749467354d3c635113e5e1a4725832c2155f12e54f8c1630c4d45f329dee1d638a4e5da1dade2ad71682a06d81a876 +MISC ChangeLog-2015 1982 SHA256 292729fa91ea647638d5a87451fa532d35b194a5fa6e626692ef02a546543bf8 SHA512 23bed6f7b17a6a45333aee6979d9ffb4e422f7945ba8b2119ff23917657b70b1fbac152f88e0847a660462f35ee989aa5b061bedec727f1aa942c3885f088ca5 WHIRLPOOL b7aaa65f24985cab6f1fc177e1ff6775832092d5e8d1cb4cba622dcb85b19c6e0444de06abe6377662c8f092499154c4a31c3e479813a0c83539bf72375a1b81 +MISC metadata.xml 406 SHA256 605e336039eb0fc73c357e79697644a44115f1b50111520aac2d87e0b6265376 SHA512 86551a8f0b0395339611995107cb9de4ebabe2fb4638539c3f77c08e7874dbb529cc3de610570eaf3b49be725f03389200d8e010c0c36d3b8af03900c9e6b9de WHIRLPOOL 0607afb86bb7adb84a882961f71fb8d33abc3984e7b550905af52d58f90879def484471b1b6d6e999a536f8dba8dbc957a9b8ac5b18e8853ed7a735ca3f73d64 diff --git a/sci-astronomy/swarp/metadata.xml b/sci-astronomy/swarp/metadata.xml new file mode 100644 index 000000000000..988b2feef665 --- /dev/null +++ b/sci-astronomy/swarp/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + SWarp takes astronomical FITS images with a WCS-like projection, + resample and stack them all. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/swarp/swarp-2.38.0.ebuild b/sci-astronomy/swarp/swarp-2.38.0.ebuild new file mode 100644 index 000000000000..3e8d9fc54134 --- /dev/null +++ b/sci-astronomy/swarp/swarp-2.38.0.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Resample and coadd astronomical FITS images" +HOMEPAGE="http://www.astromatic.net/software/swarp" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" + +IUSE="doc threads" + +RDEPEND="" +DEPEND="${RDEPEND}" + +src_configure() { + econf $(use_enable threads) +} + +src_install () { + default + use doc && dodoc doc/* +} diff --git a/sci-astronomy/wcslib/Manifest b/sci-astronomy/wcslib/Manifest new file mode 100644 index 000000000000..4c00c52a6f10 --- /dev/null +++ b/sci-astronomy/wcslib/Manifest @@ -0,0 +1,7 @@ +DIST wcslib-5.15.tar.bz2 2222193 SHA256 8bbe40a7b055578d1a6b77e92a733d2a01ce439814ea9e5a8d8bbc23c68b56e8 SHA512 b98111d7ca4b14dd479b56a368fd89a4d6f5d3741a61edeecc4a738def35bf448b68daf6a553fe88d4c84f91f5fcab3bc8d3ead1dccbd4e7c4190f31de2242ef WHIRLPOOL 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5c9a572e8cf41b650da3a7f98cc8abe331386c896193366b7ed6d73052208c5ab89ce8b68434268f2420da8a770a2368c2e5f90fb3c43d4c7257cbdcd0dea244 WHIRLPOOL 686450b9f33f141a5943944de63de1585ad62e3c2c95438d8a71983be9efae255e0af27e89e6ed8e9acf182def8484acab08460005587ab9dd0d679c6772ba5e +MISC ChangeLog 3639 SHA256 9f190a32735bbc2e3121d06a19ee3c041e22f4d78024d3668249ea967e07d9cf SHA512 31808cc37112a0fbdfb6b3636134f2cf5d72eaef7ff7411286a5c76b4f969882d14514879716478dca29a590c27c99191047a469d8414c23b44f0abed41f97f4 WHIRLPOOL 504c6bb0c81feaaabdc69a5f95e6639bc8164d062d2c5a634467c16eb4e6934d44ad0de6ddd7a9f60e58632e1239a48e8e694f8b53824bde11a2cc0ad7cc2e5a +MISC ChangeLog-2015 7248 SHA256 eaf8c8b07a1fdbc22992e175ae52f7de3e552e13b0cb8ce68b5a50d6befafb45 SHA512 63f7294fc2e50000fd6eabf560ce3d4516b8cbf4d8cbddddc3c65a5329b1823c424a7c8977c0eddd63f434e5efc256e313bbc03e7e71ef0ff22322543d1fe1c5 WHIRLPOOL f986a9289a47896b9dbd670a1de79aa2d2394d5cf61f7aa2fc72fe3ebda6a63da1b3cb8169f40c43da7a2ef83f49167f554fbe3ad96a6f458f62acc5a910a946 +MISC metadata.xml 976 SHA256 f040ad8248dc33be5fd52f95a974de1a777b665b147a2948cbb59305f466d5c1 SHA512 cd4bc1614ea120e04ced965a92fdd343db9e4d1a6046b57efd503674547cfa45ce6a03bb3a2d34a472dccd885d598cbf3cd3d9d9fe182a2fc067a801e8eb9577 WHIRLPOOL 1b8f512c4da0b4163a51158e6b2aa2923d5f9f774f6dd6c348190898a85078e142afe5d7efd1f8a5c8e2ae73f06b52a03e39542d1b15594d96a98ef79f23c8c6 diff --git a/sci-astronomy/wcslib/metadata.xml b/sci-astronomy/wcslib/metadata.xml new file mode 100644 index 000000000000..f74e78465e2d --- /dev/null +++ b/sci-astronomy/wcslib/metadata.xml @@ -0,0 +1,26 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription lang="en"> + WCSLIB is a C library, supplied with a full set of Fortran wrappers, + that implements the "World Coordinate System" (WCS) convention in FITS + (Flexible Image Transport System). It also includes a PGPLOT-based routine, + PGSBOX, for drawing general curvilinear coordinate graticules and a number of + utility programs. +</longdescription> + <use> + <flag name="fits"> + Enable support for the FITS format through <pkg>sci-libs/cfitsio</pkg> + </flag> + <flag name="pgplot"> + Builds PGBSOX routines, needs <pkg>sci-libs/pgplot</pkg> library + </flag> + <flag name="tools"> + Builds and installs extra command line utilities for WCS checking + </flag> + </use> +</pkgmetadata> diff --git a/sci-astronomy/wcslib/wcslib-5.15.ebuild b/sci-astronomy/wcslib/wcslib-5.15.ebuild new file mode 100644 index 000000000000..035f15d89123 --- /dev/null +++ b/sci-astronomy/wcslib/wcslib-5.15.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit fortran-2 + +DESCRIPTION="Astronomical World Coordinate System transformations library" +HOMEPAGE="http://www.atnf.csiro.au/people/mcalabre/WCS/" +SRC_URI="ftp://ftp.atnf.csiro.au/pub/software/${PN}/${P}.tar.bz2" + +SLOT="0/5" +LICENSE="LGPL-3" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc fortran fits pgplot static-libs +tools" + +RDEPEND=" + fits? ( sci-libs/cfitsio:0= ) + pgplot? ( sci-libs/pgplot:0= )" +DEPEND="${RDEPEND} + sys-devel/flex + virtual/pkgconfig" + +src_configure() { + local myconf=( + --docdir="${EPREFIX}"/usr/share/doc/${PF} + --htmldir="${EPREFIX}"/usr/share/doc/${PF} + $(use_enable fortran) + $(use_enable tools utils) + ) + # hacks because cfitsio and pgplot directories are hard-coded + if use fits; then + myconf+=( + --with-cfitsioinc="${EPREFIX}/usr/include" + --with-cfitsiolib="${EPREFIX}/usr/$(get_libdir)" + ) + else + myconf+=( --without-cfitsio ) + fi + if use pgplot; then + myconf+=( + --with-pgplotinc="${EPREFIX}/usr/include" + --with-pgplotlib="${EPREFIX}/usr/$(get_libdir)" + ) + else + myconf+=( --without-pgplot ) + fi + econf ${myconf[@]} + sed -i -e 's/COPYING\*//' GNUmakefile || die +} + +src_compile() { + # nasty makefile, debugging means probably full rewrite + emake -j1 +} + +src_test() { + emake -j1 check +} + +src_install () { + default + # static libs share the same symbols as shared (i.e. compiled with PIC) + # so they are not compiled twice + use static-libs || rm "${ED}"/usr/$(get_libdir)/lib*.a + use doc || rm -r \ + "${ED}"/usr/share/doc/${PF}/html \ + "${ED}"/usr/share/doc/${PF}/*.pdf +} diff --git a/sci-astronomy/wcslib/wcslib-5.16.ebuild b/sci-astronomy/wcslib/wcslib-5.16.ebuild new file mode 100644 index 000000000000..7b3cdbfbdf79 --- /dev/null +++ b/sci-astronomy/wcslib/wcslib-5.16.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit fortran-2 + +DESCRIPTION="Astronomical World Coordinate System transformations library" +HOMEPAGE="http://www.atnf.csiro.au/people/mcalabre/WCS/" +SRC_URI="ftp://ftp.atnf.csiro.au/pub/software/${PN}/${P}.tar.bz2" + +SLOT="0/5" +LICENSE="LGPL-3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc fortran fits pgplot static-libs +tools" + +RDEPEND=" + fits? ( sci-libs/cfitsio:0= ) + pgplot? ( sci-libs/pgplot:0= )" +DEPEND="${RDEPEND} + sys-devel/flex + virtual/pkgconfig" + +src_configure() { + local myconf=( + --docdir="${EPREFIX}"/usr/share/doc/${PF} + --htmldir="${EPREFIX}"/usr/share/doc/${PF} + $(use_enable fortran) + $(use_enable tools utils) + ) + # hacks because cfitsio and pgplot directories are hard-coded + if use fits; then + myconf+=( + --with-cfitsioinc="${EPREFIX}/usr/include" + --with-cfitsiolib="${EPREFIX}/usr/$(get_libdir)" + ) + else + myconf+=( --without-cfitsio ) + fi + if use pgplot; then + myconf+=( + --with-pgplotinc="${EPREFIX}/usr/include" + --with-pgplotlib="${EPREFIX}/usr/$(get_libdir)" + ) + else + myconf+=( --without-pgplot ) + fi + econf ${myconf[@]} + sed -i -e 's/COPYING\*//' GNUmakefile || die +} + +src_compile() { + # nasty makefile, debugging means probably full rewrite + emake -j1 +} + +src_test() { + emake -j1 check +} + +src_install () { + default + # static libs share the same symbols as shared (i.e. compiled with PIC) + # so they are not compiled twice + use static-libs || rm "${ED}"/usr/$(get_libdir)/lib*.a + use doc || rm -r \ + "${ED}"/usr/share/doc/${PF}/html \ + "${ED}"/usr/share/doc/${PF}/*.pdf +} diff --git a/sci-astronomy/wcstools/Manifest b/sci-astronomy/wcstools/Manifest new file mode 100644 index 000000000000..115405cbbaf4 --- /dev/null +++ b/sci-astronomy/wcstools/Manifest @@ -0,0 +1,13 @@ +AUX Makefile.am 2016 SHA256 529ff2dade6922561c0be9ca8b57167e9aad95a10eaa4df14bddb4831d18007e SHA512 13f516405481b358c8a9e4a9e83fee28b6f846a000c0143c2e1dca61cf2afacea9aade3ccf3fa5cd9b7f1a4d6b965c4ec1ce002c614e9b5e52137cbf1abcd60b WHIRLPOOL 4b846faf6a6b2cd5ebd9d6aa4ade18c4dd02bab97a0872385ee27cc4b773ae72535ec027e83f2b6fd93e1c82ac554f8d3a39984cb7e3d1ae014a1228b0b07094 +AUX Makefile.libwcs.am 709 SHA256 77cfe0d3ce8293354d3133e20c29839fef702d7c7634bdce6f448d58be1f03a3 SHA512 7fc901ec0daa55e11028c457a9d8f1735ba559bcf5dcc1fb18cd6ffca121b01c17be6c938f89c599298c45be166ef8917b6ddd0bc5ce86f461c0668deb8d8918 WHIRLPOOL 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imcat imhead immatch \ + imrot imsize imstar imwcs scat sethead addpix getpix setpix sky2xy \ + keyhead skycoor subpix xy2sky wcshead conpix gettab newfits getfits \ + imstack imextract sumpix wcsremap getcol wcsgetdate imfill imsmooth imresize \ + fileroot filename filext char2sp sp2char wcscrlf isnum isrange isfits \ + isfile simpos bincat + +# these ones don't need libwcs +wcscrlf_SOURCES = crlf.c +filename_SOURCES = filename.c +filedir_SOURCES = filedir.c +fileroot_SOURCES = fileroot.c +filext_SOURCES = filext.c +isrange_SOURCES = isrange.c + +LDADD = $(top_builddir)/libwcs/libwcstools.la + +bincat_SOURCES = bincat.c +getcol_SOURCES = getcol.c +wcsgetdate_SOURCES = getdate.c +gethead_SOURCES = gethead.c +getfits_SOURCES = getfits.c +getpix_SOURCES = getpix.c +gettab_SOURCES = gettab.c +imcat_SOURCES = imcat.c +imsize_SOURCES = imsize.c +imstar_SOURCES = imstar.c +imwcs_SOURCES = imwcs.c +immatch_SOURCES = immatch.c +scat_SOURCES = scat.c +setpix_SOURCES = setpix.c +skycoor_SOURCES = skycoor.c +sumpix_SOURCES = sumpix.c +xy2sky_SOURCES = xy2sky.c +simpos_SOURCES = simpos.c + +addpix_SOURCES = addpix.c +char2sp_SOURCES = char2sp.c +conpix_SOURCES = conpix.c +cphead_SOURCES = cphead.c +delwcs_SOURCES = delwcs.c +delhead_SOURCES = delhead.c +edhead_SOURCES = edhead.c +fixpix_SOURCES = fixpix.c +i2f_SOURCES = i2f.c +imfill_SOURCES = imfill.c +imresize_SOURCES = imresize.c +imsmooth_SOURCES = imsmooth.c +imhead_SOURCES = imhead.c +imrot_SOURCES = imrot.c +imstack_SOURCES = imstack.c +imextract_SOURCES = imextract.c +isfile_SOURCES = isfile.c +isnum_SOURCES = isnum.c +keyhead_SOURCES = keyhead.c +newfits_SOURCES = newfits.c +wcsremap_SOURCES = remap.c +sethead_SOURCES = sethead.c +sky2xy_SOURCES = sky2xy.c +sp2char_SOURCES = sp2char.c +subpix_SOURCES = subpix.c +wcshead_SOURCES = wcshead.c diff --git a/sci-astronomy/wcstools/files/Makefile.libwcs.am b/sci-astronomy/wcstools/files/Makefile.libwcs.am new file mode 100644 index 000000000000..5905aa3d7955 --- /dev/null +++ b/sci-astronomy/wcstools/files/Makefile.libwcs.am @@ -0,0 +1,17 @@ +lib_LTLIBRARIES = libwcstools.la +libwcstools_la_SOURCES = \ + imsetwcs.c imgetwcs.c matchstar.c findstar.c daoread.c wcscon.c \ + fitswcs.c wcsinit.c wcs.c ty2read.c webread.c tmcread.c \ + gscread.c gsc2read.c ujcread.c uacread.c ubcread.c ucacread.c \ + sdssread.c tabread.c binread.c ctgread.c actread.c catutil.c \ + skybotread.c imrotate.c fitsfile.c imhfile.c \ + hget.c hput.c imio.c dateutil.c imutil.c \ + worldpos.c tnxpos.c zpxpos.c dsspos.c platepos.c \ + sortstar.c platefit.c iget.c fileutil.c \ + wcslib.c lin.c cel.c proj.c sph.c wcstrig.c distort.c poly.c + +wcsdir = $(includedir)/wcs +wcs_HEADERS = \ + wcscat.h wcslib.h wcs.h lwcs.h fitshead.h fitsfile.h imio.h + +noinst_HEADERS = fitsfile1.h wcscat1.h diff --git a/sci-astronomy/wcstools/files/configure.ac b/sci-astronomy/wcstools/files/configure.ac new file mode 100644 index 000000000000..3a46108cd304 --- /dev/null +++ b/sci-astronomy/wcstools/files/configure.ac @@ -0,0 +1,9 @@ +AC_INIT([wcstools], [3.9.x] , [http://tdc-www.harvard.edu/wcstools/]) +AM_INIT_AUTOMAKE([foreign]) +AC_CONFIG_HEADERS([config.h]) + +AC_PROG_CC +LT_INIT([disable-static]) +AC_CHECK_LIB([m], [sin]) +AC_CONFIG_FILES([libwcs/Makefile Makefile wcstools.pc]) +AC_OUTPUT diff --git a/sci-astronomy/wcstools/files/wcstools-3.9.4-compiler-warning.patch b/sci-astronomy/wcstools/files/wcstools-3.9.4-compiler-warning.patch new file mode 100644 index 000000000000..ff81820d404a --- /dev/null +++ b/sci-astronomy/wcstools/files/wcstools-3.9.4-compiler-warning.patch @@ -0,0 +1,34 @@ +From: Ole Streicher <debian@liska.ath.cx> +Date: Fri, 5 Aug 2016 16:17:42 +0200 +Subject: Fix some compiler warnings. + +--- + libwcs/imhfile.c | 2 +- + libwcs/webread.c | 1 + + 2 files changed, 2 insertions(+), 1 deletion(-) + +diff --git a/libwcs/imhfile.c b/libwcs/imhfile.c +index b618686..4279d3c 100644 +--- a/libwcs/imhfile.c ++++ b/libwcs/imhfile.c +@@ -1075,7 +1075,7 @@ char *hdrname; /* IRAF image header file pathname */ + + /* add name */ + newpixname[len] = '\0'; +- (void)strncat (newpixname, pixname, SZ_IM2PIXFILE); ++ (void)strncat (newpixname, pixname, SZ_IM2PIXFILE - len); + } + + /* Pixel file has same name as header file, but with .pix extension */ +diff --git a/libwcs/webread.c b/libwcs/webread.c +index 1f5c518..cd9cba9 100644 +--- a/libwcs/webread.c ++++ b/libwcs/webread.c +@@ -32,6 +32,7 @@ + #include <stdlib.h> + #include <unistd.h> + #include <string.h> ++#include <ctype.h> + #include <math.h> + #include "wcs.h" + #include "fitsfile.h" diff --git a/sci-astronomy/wcstools/files/wcstools-3.9.4-fix-tests.patch b/sci-astronomy/wcstools/files/wcstools-3.9.4-fix-tests.patch new file mode 100644 index 000000000000..d8679578f408 --- /dev/null +++ b/sci-astronomy/wcstools/files/wcstools-3.9.4-fix-tests.patch @@ -0,0 +1,34 @@ +From: Ole Streicher <debian@liska.ath.cx> +Date: Fri, 5 Aug 2016 16:17:42 +0200 +Subject: Fix several bugs that appear in during the mayhem tests. + +--- + cphead.c | 2 +- + getpix.c | 1 + + 2 files changed, 2 insertions(+), 1 deletion(-) + +diff --git a/cphead.c b/cphead.c +index 0c025dd..2b34f12 100644 +--- a/cphead.c ++++ b/cphead.c +@@ -148,7 +148,7 @@ char **av; + free (kwd); + kwd = kwdnew; + } +- for (ikwd = nkwd; i < nkwd+nkwd1+32; i++) { ++ for (ikwd = nkwd; ikwd < nkwd+nkwd1+32; ikwd++) { + kwd[ikwd] = (char *) calloc (32, 1); + } + strcpy (kwd[nkwd], "RA"); +diff --git a/getpix.c b/getpix.c +index ccb38f0..64cc571 100644 +--- a/getpix.c ++++ b/getpix.c +@@ -83,6 +83,7 @@ char **av; + char *crange; /* Column range string */ + char *rstr; + char *dstr = NULL; ++ char rastr[32], decstr[32]; + char *cstr; + int systemp; + int i; diff --git a/sci-astronomy/wcstools/files/wcstools-3.9.4-haspm.patch b/sci-astronomy/wcstools/files/wcstools-3.9.4-haspm.patch new file mode 100644 index 000000000000..427c476edb95 --- /dev/null +++ b/sci-astronomy/wcstools/files/wcstools-3.9.4-haspm.patch @@ -0,0 +1,22 @@ +From: Ole Streicher <olebole@debian.org> +Date: Fri, 5 Aug 2016 16:17:42 +0200 +Subject: Fix uninitialized value for haspm in RASortStars() + +This fixes a crash with 'imstar -s'. +--- + libwcs/sortstar.c | 2 ++ + 1 file changed, 2 insertions(+) + +diff --git a/libwcs/sortstar.c b/libwcs/sortstar.c +index 0123c64..f77555f 100644 +--- a/libwcs/sortstar.c ++++ b/libwcs/sortstar.c +@@ -856,6 +856,8 @@ int log; /* If >0, log progress every time mod number written */ + hasnum = 1; + if (spra != NULL && spdec != NULL) + haspm = 1; ++ else ++ haspm = 0; + if (sx != NULL && sy != NULL) + hasxy = 1; + else diff --git a/sci-astronomy/wcstools/files/wcstools-3.9.4-spelling.patch b/sci-astronomy/wcstools/files/wcstools-3.9.4-spelling.patch new file mode 100644 index 000000000000..d655c345c257 --- /dev/null +++ b/sci-astronomy/wcstools/files/wcstools-3.9.4-spelling.patch @@ -0,0 +1,242 @@ +From: Ole Streicher <debian@liska.ath.cx> +Date: Fri, 5 Aug 2016 16:17:42 +0200 +Subject: Spellfixes and manpage fixes + +--- + edhead.c | 2 +- + immatch.c | 2 +- + imwcs.c | 4 ++-- + libwcs/fitsfile.c | 10 +++++----- + libwcs/imhfile.c | 4 ++-- + man/man1/edhead.1 | 2 +- + man/man1/imcat.1 | 2 +- + man/man1/imgsc.1 | 4 ++-- + man/man1/imua2.1 | 2 +- + man/man1/keyhead.1 | 2 +- + man/man1/skycoor.1 | 2 +- + man/man1/sua2.1 | 2 +- + man/man1/susa2.1 | 2 +- + 13 files changed, 20 insertions(+), 20 deletions(-) + +diff --git a/edhead.c b/edhead.c +index 1fe33e2..494cb4d 100644 +--- a/edhead.c ++++ b/edhead.c +@@ -109,7 +109,7 @@ usage () + exit (-1); + fprintf (stderr,"Edit header of FITS or IRAF image file\n"); + fprintf(stderr,"usage: edhead [-nv] [-e editor] file.fits file.imh...\n"); +- fprintf(stderr," -e: Set editor, overiding environment EDITOR \n"); ++ fprintf(stderr," -e: Set editor, overriding environment EDITOR \n"); + fprintf(stderr," -n: write new file, else overwrite \n"); + fprintf(stderr," -v: verbose\n"); + exit (1); +diff --git a/immatch.c b/immatch.c +index 02af222..59b4826 100644 +--- a/immatch.c ++++ b/immatch.c +@@ -383,7 +383,7 @@ char **av; + + /* If reference catalog is not set, exit with an error message */ + if (refcatname == NULL) { +- PrintUsage ("* Must specifiy a reference catalog using -c or alias."); ++ PrintUsage ("* Must specify a reference catalog using -c or alias."); + } + + /* Process image files from list file */ +diff --git a/imwcs.c b/imwcs.c +index c32cffd..6639198 100644 +--- a/imwcs.c ++++ b/imwcs.c +@@ -285,7 +285,7 @@ char **av; + ac--; + break; + +- case 'o': /* Specifiy output image filename */ ++ case 'o': /* Specify output image filename */ + if (ac < 2) + PrintUsage (str); + if (*(av+1)[0] == '-' || *(str+1) != (char)0) +@@ -476,7 +476,7 @@ char **av; + + /* If reference catalog is not set, exit with an error message */ + if (refcatname == NULL && matchfile == NULL) { +- PrintUsage ("* Must specifiy a reference catalog using -c or alias."); ++ PrintUsage ("* Must specify a reference catalog using -c or alias."); + } + + if (!writeheader && !verbose) { +diff --git a/libwcs/fitsfile.c b/libwcs/fitsfile.c +index 2c3e709..a2f0d0f 100644 +--- a/libwcs/fitsfile.c ++++ b/libwcs/fitsfile.c +@@ -1583,7 +1583,7 @@ char *image; /* FITS image pixels */ + if (!access (filename, 0)) { + fd = open (filename, O_WRONLY); + if (fd < 3) { +- snprintf (fitserrmsg,79, "FITSWIMAGE: file %s not writeable\n", filename); ++ snprintf (fitserrmsg,79, "FITSWIMAGE: file %s not writable\n", filename); + return (0); + } + } +@@ -1622,7 +1622,7 @@ char *image; /* FITS image pixels */ + if (!access (filename, 0)) { + fd = open (filename, O_WRONLY); + if (fd < 3) { +- snprintf (fitserrmsg,79, "FITSWEXT: file %s not writeable\n", ++ snprintf (fitserrmsg,79, "FITSWEXT: file %s not writable\n", + filename); + return (0); + } +@@ -1884,7 +1884,7 @@ char *filename0; /* Name of input FITS image file */ + if (!access (filename, 0)) { + fdout = open (filename, O_WRONLY); + if (fdout < 3) { +- snprintf (fitserrmsg,79, "FITSCIMAGE: file %s not writeable\n", filename); ++ snprintf (fitserrmsg,79, "FITSCIMAGE: file %s not writable\n", filename); + return (0); + } + } +@@ -1970,7 +1970,7 @@ char *header; /* FITS image header */ + if (!access (filename, 0)) { + fd = open (filename, O_WRONLY); + if (fd < 3) { +- snprintf (fitserrmsg, 79, "FITSWHEAD: file %s not writeable\n", filename); ++ snprintf (fitserrmsg, 79, "FITSWHEAD: file %s not writable\n", filename); + return (0); + } + } +@@ -2072,7 +2072,7 @@ char *header; /* FITS image header */ + if (ext != NULL) + *ext = cext; + if (fd < 3) { +- snprintf (fitserrmsg, 79, "FITSWEXHEAD: file %s not writeable\n", filename); ++ snprintf (fitserrmsg, 79, "FITSWEXHEAD: file %s not writable\n", filename); + return (-1); + } + +diff --git a/libwcs/imhfile.c b/libwcs/imhfile.c +index 4279d3c..25f82ac 100644 +--- a/libwcs/imhfile.c ++++ b/libwcs/imhfile.c +@@ -896,7 +896,7 @@ char *fitsheader; /* FITS image header */ + if (!access (hdrname, 0)) { + fd = open (hdrname, O_WRONLY); + if (fd < 3) { +- fprintf (stderr, "IRAFWIMAGE: file %s not writeable\n", hdrname); ++ fprintf (stderr, "IRAFWIMAGE: file %s not writable\n", hdrname); + return (0); + } + } +@@ -993,7 +993,7 @@ char *image; /* IRAF image */ + if (!access (pixname, 0)) { + fd = open (pixname, O_WRONLY); + if (fd < 3) { +- fprintf (stderr, "IRAFWIMAGE: file %s not writeable\n", pixname); ++ fprintf (stderr, "IRAFWIMAGE: file %s not writable\n", pixname); + return (0); + } + } +diff --git a/man/man1/edhead.1 b/man/man1/edhead.1 +index 543487c..74dbedf 100644 +--- a/man/man1/edhead.1 ++++ b/man/man1/edhead.1 +@@ -11,7 +11,7 @@ takes care of trailing spaces so they can be ignored while using the editor. + .SH Options + .TP + .B \-e <editor path> +-Set editor, overiding environment EDITOR ++Set editor, overriding environment EDITOR + .TP + .B \-n + Write a new file with .e before the file type extension. The default is +diff --git a/man/man1/imcat.1 b/man/man1/imcat.1 +index a1cac13..e975af6 100644 +--- a/man/man1/imcat.1 ++++ b/man/man1/imcat.1 +@@ -4,7 +4,7 @@ imcat \- List catalog stars in FITS and IRAF image files + .SH Synopsis + imcat [options] FITS or IRAF file(s) + .SH Description +-Search given catalog withing area described by the world coordinate ++Search given catalog within area described by the world coordinate + system in an image header. May be called as imuac to search the USNO A 1.0 + catalog, imusac to search the USNO SA 1.0 catalog, or imgsc to search + the HST Guide Star Catalog. +diff --git a/man/man1/imgsc.1 b/man/man1/imgsc.1 +index 604b072..aa64b2c 100644 +--- a/man/man1/imgsc.1 ++++ b/man/man1/imgsc.1 +@@ -1,10 +1,10 @@ +-.TH imgsc(1) WCS "14 April 1998" ++.TH imgsc 1 WCSTools "14 April 1998" + .SH Name + imgsc \- Find HST GSC stars in FITS or IRAF image files + .SH Synopsis + imgsc [options] FITS or IRAF file(s) + .SH Description +-Search the HST Guide Star Catalog withing the area described by the world ++Search the HST Guide Star Catalog within the area described by the world + coordinate system in an image header. This is a link to imcat rather than + a separate executable. + .SH Options +diff --git a/man/man1/imua2.1 b/man/man1/imua2.1 +index 4acbc8b..22b896f 100644 +--- a/man/man1/imua2.1 ++++ b/man/man1/imua2.1 +@@ -78,7 +78,7 @@ Sort by RA instead of flux + Tab table to standard output as well as file + .TP + .B \-u <plate> +-Accept only stars from thsi plate (default all) ++Accept only stars from this plate (default all) + .TP + .B \-v + Verbose listing of processing intermediate results +diff --git a/man/man1/keyhead.1 b/man/man1/keyhead.1 +index 4d1dfb1..fea7652 100644 +--- a/man/man1/keyhead.1 ++++ b/man/man1/keyhead.1 +@@ -7,7 +7,7 @@ sethead [\-hknv] <FITS or IRAF file> kw1=kw1a kw2=kwd2a ... kwn=kwdna + Change the names of keywords in FITS or IRAF image headers. Each current + image keyword whose entry is to be modified should be followed by an + equal sign and a second keyword, with no intervening spaces. +-If the \-r option is used, the value of the second keyword is transfered ++If the \-r option is used, the value of the second keyword is transferred + to that of the first. Otherwise, the name of the first keyword is changed + to the second keyword. + To change keywords in a list of files, substitute @<listfile> for the file +diff --git a/man/man1/skycoor.1 b/man/man1/skycoor.1 +index c3b3d2b..2126c29 100644 +--- a/man/man1/skycoor.1 ++++ b/man/man1/skycoor.1 +@@ -1,4 +1,4 @@ +-.TH skycoor(1) WCSTools "9 November 2001" ++.TH skycoor 1 WCSTools "9 November 2001" + .SH Name + skycoor \- Convert coordinates + .SH Synopsis +diff --git a/man/man1/sua2.1 b/man/man1/sua2.1 +index b28c89a..d29d126 100644 +--- a/man/man1/sua2.1 ++++ b/man/man1/sua2.1 +@@ -1,6 +1,6 @@ + .TH sua2 1 WCS "19 November 1999" + .SH Name +-Find USNO-A2.0 Catalog stars in a square on the sky ++sua2 \- Find USNO-A2.0 Catalog stars in a square on the sky + .SH Synopsis + sua2 [options] ra dec system + .SH Description +diff --git a/man/man1/susa2.1 b/man/man1/susa2.1 +index 06409e2..8d03886 100644 +--- a/man/man1/susa2.1 ++++ b/man/man1/susa2.1 +@@ -1,6 +1,6 @@ + .TH susa2 1 WCS "9 June 2000" + .SH Name +-Find USNO-SA2.0 Catalog stars in a square on the sky ++susa2 \- Find USNO-SA2.0 Catalog stars in a square on the sky + .SH Synopsis + susac [options] [\-b or \-j] ra dec + .SH Description diff --git a/sci-astronomy/wcstools/files/wcstools.pc.in b/sci-astronomy/wcstools/files/wcstools.pc.in new file mode 100644 index 000000000000..c8eb8b094a0a --- /dev/null +++ b/sci-astronomy/wcstools/files/wcstools.pc.in @@ -0,0 +1,13 @@ +prefix=@prefix@ +exec_prefix=@exec_prefix@ +libdir=@libdir@ +includedir=@includedir@ + +Name: @PACKAGE_NAME@ +Description: World Coordinate System Library and Tools +Version: @PACKAGE_VERSION@ +URL: http://tdc-www.harvard.edu/wcstools/ +Libs: -L${libdir} -lwcstools +Libs.private: -lm +Cflags: -I${includedir}/wcs + diff --git a/sci-astronomy/wcstools/metadata.xml b/sci-astronomy/wcstools/metadata.xml new file mode 100644 index 000000000000..94f4f60be350 --- /dev/null +++ b/sci-astronomy/wcstools/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Astronomers often need to relate positions on an image of the sky to + positions on the real sky to identify catalogued objects in images, + tell other people where to look to find an identified object, or to + compute motions of planets, satellites, asteroids, or comets. WCSTools + is a package of programs and a library of utility subroutines for + setting and using the world coordinate systems (WCS) in the headers of + the most common astronomical image formats, FITS and IRAF .imh, to + relate image pixels to sky coordinates. + The Gentoo package is using GNU autotools to produce portable shared + and static libraried. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/wcstools/wcstools-3.9.5.ebuild b/sci-astronomy/wcstools/wcstools-3.9.5.ebuild new file mode 100644 index 000000000000..641bebc84fb2 --- /dev/null +++ b/sci-astronomy/wcstools/wcstools-3.9.5.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils autotools + +DESCRIPTION="World Coordinate System library for astronomical FITS images" +HOMEPAGE="http://tdc-www.harvard.edu/software/wcstools" +SRC_URI="${HOMEPAGE}/${P}.tar.gz" + +LICENSE="GPL-2 LGPL-2.1" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DOCS=( Readme Programs NEWS ) + +PATCHES=( + "${FILESDIR}"/${PN}-3.9.4-spelling.patch + "${FILESDIR}"/${PN}-3.9.4-haspm.patch + "${FILESDIR}"/${PN}-3.9.4-fix-tests.patch + "${FILESDIR}"/${PN}-3.9.4-compiler-warning.patch +) + +src_prepare() { + default + einfo "Copying gentoo autotools files" + local f + for f in "${FILESDIR}"/{configure.ac,wcstools.pc.in,Makefile.am}; do + cp ${f} "${S}"/ || die + done + cp "${FILESDIR}"/Makefile.libwcs.am "${S}"/libwcs/Makefile.am || die + # avoid colliding with fixdos, getdate and remap from other packages + sed -i \ + -e 's/getdate/wcsgetdate/' \ + -e 's/crlf/wcscrlf/' \ + -e 's/remap/wcsremap/' \ + -e "s/3.... Programs/${PV} Programs/" \ + wcstools || die + eautoreconf +} + +src_test() { + einfo "Testing various wcstools programs" + ./newfits -a 10 -j 248 41 -p 0.15 test.fits || die "test newfits failed" + ./sethead test.fits A=1 B=1 || die "test sethead failed" + [[ "$(./gethead test.fits RA)" == "16:32:00.0000" ]] \ + || die "test gethead failed" + rm test.fits +} + +src_install() { + default + doman man/man1/* + newdoc libwcs/NEWS NEWS.libwcs + newdoc libwcs/Readme Readme.libwcs + +} + +pkg_postinst() { + elog "The following execs have been renamed to avoid colliding" + elog "with other packages:" + elog " getdate -> wcsgetdate" + elog " crlf -> wcscrlf" + elog " remap -> wcsremap" +} diff --git a/sci-astronomy/weightwatcher/Manifest b/sci-astronomy/weightwatcher/Manifest new file mode 100644 index 000000000000..8dc89b653571 --- /dev/null +++ b/sci-astronomy/weightwatcher/Manifest @@ -0,0 +1,4 @@ +DIST weightwatcher-1.12.tar.gz 460583 SHA256 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lang="en"> + WeightWatcher is a program that combines weight-maps, flag-maps and + polygon data in order to produce control maps which can directly be + used in astronomical image-processing packages like Drizzle, + <pkg>sci-astronomy/sextractor</pkg> or <pkg>sci-astronomy/swarp</pkg>. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/weightwatcher/weightwatcher-1.12.ebuild b/sci-astronomy/weightwatcher/weightwatcher-1.12.ebuild new file mode 100644 index 000000000000..8df45c762e4f --- /dev/null +++ b/sci-astronomy/weightwatcher/weightwatcher-1.12.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Combine weight maps and polygon for astronomical images weighting" +HOMEPAGE="http://www.astromatic.net/software/weightwatcher/" +SRC_URI="http://www.astromatic.net/download/${PN}/${P}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="GPL-3" +SLOT="0" +IUSE="doc" + +RDEPEND="" +DEPEND="${RDEPEND}" + +src_install () { + default + use doc && dodoc doc/* +} diff --git a/sci-astronomy/xephem/Manifest b/sci-astronomy/xephem/Manifest new file mode 100644 index 000000000000..82173f0ae2f5 --- /dev/null +++ b/sci-astronomy/xephem/Manifest @@ -0,0 +1,7 @@ +AUX xephem-3.7.7-implicits.patch 305 SHA256 c512083980a72c03ca37cfc1db4d23bf7a6a4fa343cae41ec50bf790d9f50846 SHA512 220186bb7f72fe0de6ca75a67df7b1a4d4cc57cc4768d565dc8225e20df93738c7bdd62bde6297941d1ec6638800950ef56e355de8ca1e3e8192b903b021adba WHIRLPOOL ce6bf19fdcced1059b62f7b73f4eb79dc6028aabea85e33733220c4cb431b6a91306f9d12aaabe5d0b9a8bd54c6384237ccb6deea48c119b0a0583e37dcc66b5 +AUX xephem-3.7.7-respect_env_vars.patch 3781 SHA256 13c7f579f76300d8efd28e721094d826bdfda173ff1795be380b2a2d368bc7cb SHA512 84a9697c3b05ed28bcc59f4b30807aad76c3228e1aec3db898995d36cae3ef58557ff984a57f60b99e15dd04670a65061451dc00437498c14ed081c0cf06830d WHIRLPOOL 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bd6b43cc78b6ece7d7550a887f12b1050eba37bba61853cf09b2cbea44f74bbba911987909cabe1e48d4c13b1458b8be024745d1502515ee8246117922439295 diff --git a/sci-astronomy/xephem/files/xephem-3.7.7-implicits.patch b/sci-astronomy/xephem/files/xephem-3.7.7-implicits.patch new file mode 100644 index 000000000000..4c340711e0e8 --- /dev/null +++ b/sci-astronomy/xephem/files/xephem-3.7.7-implicits.patch @@ -0,0 +1,12 @@ +sunmenu.c:920:3: warning: implicit declaration of function ‘strptime’ + +--- a/GUI/xephem/sunmenu.c ++++ b/GUI/xephem/sunmenu.c +@@ -1,6 +1,7 @@ + /* code to manage the sun display + */ + ++#define _XOPEN_SOURCE /* See feature_test_macros(7) */ + #include <stdio.h> + #include <stdlib.h> + #include <errno.h> diff --git a/sci-astronomy/xephem/files/xephem-3.7.7-respect_env_vars.patch b/sci-astronomy/xephem/files/xephem-3.7.7-respect_env_vars.patch new file mode 100644 index 000000000000..e916bd339782 --- /dev/null +++ b/sci-astronomy/xephem/files/xephem-3.7.7-respect_env_vars.patch @@ -0,0 +1,137 @@ +diff -ruN a/GUI/xephem/Makefile b/GUI/xephem/Makefile +--- a/GUI/xephem/Makefile 2015-08-09 22:36:50.000000000 +0100 ++++ b/GUI/xephem/Makefile 2016-01-24 09:34:24.378578717 +0000 +@@ -10,9 +10,9 @@ + # one executable, xephem. + + # These -I and -L flags point to the supporting XEphem libraries +-LIBINC = -I../../libastro -I../../libip -I../../liblilxml -I../../libjpegd -I../../libpng -I../../libz +-LIBLNK = -L../../libastro -L../../libip -L../../liblilxml -L../../libjpegd -L../../libpng -L../../libz +-LIBLIB = -lastro -lip -llilxml -ljpegd -lpng -lz ++LIBINC = -I../../libastro -I../../libip -I../../liblilxml ++LIBLNK = -L../../libastro -L../../libip -L../../liblilxml ++LIBLIB = -lastro -lip -llilxml -ljpeg -lpng -lz + + # MOTIFI is the directory containing the Xm directory of include files. + # MOTIFL is the directory containing the libXm.a library. +@@ -30,12 +30,9 @@ + endif + + # for linux and Apple OS X +-CC = gcc +-CLDFLAGS = -g +-CFLAGS = $(LIBINC) $(CLDFLAGS) -O2 -Wall -I$(MOTIFI) -I/opt/X11/include +-LDFLAGS = $(LIBLNK) $(CLDFLAGS) -L$(MOTIFL) -L/opt/X11/lib + XLIBS = -lXm -lXp -lXt -lXext -lXmu -lX11 +-LIBS = $(XLIBS) $(LIBLIB) -lm ++CFLAGS := $(LIBINC) $(CFLAGS) ++LIBS = $(LIBLNK) $(XLIBS) $(LIBLIB) -lm + + # static linking on Apple using X11 libs from ports + # CC = gcc +@@ -68,9 +65,9 @@ + # MOTIFI = -I/usr/include + # MOTIFL = -L/usr/lib + # CC = cc +-# CLDFLAGS = ++# CLDFLAGS = + # CFLAGS = $(LIBINC) $(CLDFLAGS) -O -I$(MOTIFI) +-# LDFLAGS = $(LIBLNK) $(CLDFLAGS) -L$(MOTIFL) ++# LDFLAGS = $(LIBLNK) $(CLDFLAGS) -L$(MOTIFL) + # XLIBS = -lXm -lXt -lX11 + # LIBS = $(XLIBS) $(LIBLIB) -lsocket -lnsl -lc -lm /usr/ucblib/libucb.a + # Note: if you get regex undefined, add -lgen to the end of LIBS. +@@ -195,12 +192,9 @@ + nroff -man $? > $@ + + libs: +- cd ../../libastro; make +- cd ../../libip; make +- cd ../../libjpegd; make +- cd ../../liblilxml; make +- cd ../../libpng; make +- cd ../../libz; make ++ $(MAKE) -C ../../libastro ++ $(MAKE) -C ../../libip ++ $(MAKE) -C ../../liblilxml + + clean: + rm -fr *.o ../../lib*/*.[ao] +diff -ruN a/libastro/Makefile b/libastro/Makefile +--- a/libastro/Makefile 2006-02-24 03:37:31.000000000 +0000 ++++ b/libastro/Makefile 2016-01-24 09:30:28.745982455 +0000 +@@ -4,8 +4,6 @@ + # compiler and flags + + # gcc +-CC = gcc +-CFLAGS= -O2 -Wall + + # macosx universal binary + # CFLAGS= -O2 -Wall -arch i386 -arch ppc +@@ -83,11 +81,11 @@ + vsop87_data.o + + libastro.a: $(HS) $(OBJS) +- ar rv $@ $(OBJS) +- ranlib $@ ++ $(AR) rv $@ $(OBJS) ++ $(RANLIB) $@ + + libastro.so: $(HS) $(OBJS) +- $(CC) -shared -o $@ $(OBJS) ++ $(CC) $(LDFLAGS) -shared -o $@ $(OBJS) + + clobber: + rm -f *.o libastro.a +diff -ruN a/libip/Makefile b/libip/Makefile +--- a/libip/Makefile 2009-01-05 20:53:46.000000000 +0000 ++++ b/libip/Makefile 2016-01-24 09:30:28.745982455 +0000 +@@ -2,8 +2,7 @@ + # (C) 2001 Elwood Charles Downey + + # gcc +-CC = gcc +-CFLAGS= -I../libastro -O2 -Wall ++CFLAGS += -I../libastro + + # macosx universal binary + # CFLAGS= -I../libastro -O2 -Wall -arch i386 -arch ppc +@@ -36,11 +35,11 @@ + HS = ip.h fsmatch.h + + libip.a: $(HS) $(OBJS) +- ar rv $@ $(OBJS) +- ranlib $@ ++ $(AR) rv $@ $(OBJS) ++ $(RANLIB) $@ + + libip.so: $(OBJS) +- gcc -shared -o $@ $(OBJS) ++ $(CC) $(LDFLAGS) -shared -o $@ $(OBJS) + + clobber: + rm -f *.o libip.a +diff -ruN a/liblilxml/Makefile b/liblilxml/Makefile +--- a/liblilxml/Makefile 2006-02-24 03:37:32.000000000 +0000 ++++ b/liblilxml/Makefile 2016-01-24 09:30:28.745982455 +0000 +@@ -4,8 +4,6 @@ + # compiler and flags + + # gcc +-CC = gcc +-CFLAGS= -O2 -Wall + + # macosx universal binary + # CFLAGS= -O2 -Wall -arch i386 -arch ppc +@@ -27,8 +25,8 @@ + OBJS = lilxml.o base64.o + + liblilxml.a: $(HS) $(OBJS) +- ar r $@ $(OBJS) +- ranlib $@ ++ $(AR) r $@ $(OBJS) ++ $(RANLIB) $@ + + liltest: liltest.o liblilxml.a + $(CC) $(LDFLAGS) -o liltest liltest.o liblilxml.a diff --git a/sci-astronomy/xephem/metadata.xml b/sci-astronomy/xephem/metadata.xml new file mode 100644 index 000000000000..f75d933bc7ec --- /dev/null +++ b/sci-astronomy/xephem/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + Xephem is an interactive astronomical ephemeris program for X Windows + systems. It computes heliocentric, geocentric and topocentric + information for fixed celestial objects and objects in heliocentric + and geocentric orbits; has built-in support for all planet positions; + the moons of Jupiter, Saturn and Earth; Mars' and Jupiter's central + meridian longitude; Saturn's rings; and Jupiter's Great Red Spot. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/xephem/xephem-3.7.7.ebuild b/sci-astronomy/xephem/xephem-3.7.7.ebuild new file mode 100644 index 000000000000..ad77acbd7215 --- /dev/null +++ b/sci-astronomy/xephem/xephem-3.7.7.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils toolchain-funcs + +DESCRIPTION="Interactive tool for astronomical ephemeris and sky simulation" +HOMEPAGE="http://www.clearskyinstitute.com/xephem" +SRC_URI="http://97.74.56.125/free/${P}.tar.gz" + +LICENSE="XEphem" +SLOT=0 +KEYWORDS="amd64 ppc ppc64 x86 ~x86-fbsd ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=">=x11-libs/motif-2.3:0 + virtual/jpeg:0= + media-libs/libpng:0=" +DEPEND="${RDEPEND} + sys-apps/groff" + +PATCHES=( + "${FILESDIR}/${P}-respect_env_vars.patch" + "${FILESDIR}/${P}-implicits.patch" +) + +src_prepare() { + default + echo > "${T}"/XEphem "XEphem.ShareDir: /usr/share/${PN}" + echo > "${T}"/99xephem "XEHELPURL=/usr/share/doc/${PF}/html/xephem.html" +} + +src_compile() { + tc-export CC AR RANLIB + emake -C GUI/xephem +} + +src_install() { + insinto /usr/share/X11/app-defaults + has_version '<x11-base/xorg-x11-7.0' && insinto /etc/X11/app-defaults + doins "${T}"/XEphem + doenvd "${T}"/99xephem + dodoc README + + cd GUI/xephem + dobin xephem + doman xephem.1 + newicon XEphem.png ${PN}.png + insinto /usr/share/${PN} + doins -r auxil catalogs fifos fits gallery lo + insinto /usr/share/doc/${PF}/html + doins -r help/* + make_desktop_entry xephem XEphem ${PN} +} diff --git a/sci-astronomy/xfitsview/Manifest b/sci-astronomy/xfitsview/Manifest new file mode 100644 index 000000000000..ec51c60e0f80 --- /dev/null +++ b/sci-astronomy/xfitsview/Manifest @@ -0,0 +1,6 @@ +AUX xfitsview-2.2-build_system.patch 1316 SHA256 00a7235b5d85d94cf1309be4eecb42321eaab5716a0b94ffd349bf9663c5feb5 SHA512 a8d40252424f7c49fbe7fd3b6d2d6f5fbbdb0b09c01d1aff0854cf55576106dfba29ec63557ac7e3b06971a502413e901e3ccc7bc8443d36937b17495e87cdaf WHIRLPOOL 363b62323c807a70b7068cf38b930f1f97139bcfa9920561da4737a0ff8b93e4c95fe05c042cd25919c459e259b8d4e7d19b7dd578ec4e85a33caa56d9ba179c +DIST xfitsview2.2.tgz 290959 SHA256 f47649ad0091fa555aae13a0c539cd378591df28613b8572195baf77eea74fbb SHA512 01e57f0dd9c7320b86683a2235e7a779828f19c34b9380d5127bad85941e8861fd86f17a276f7ec60038d9e3bc4c8df54cc6291b70f8c7ecce4ef17cfb92b1b9 WHIRLPOOL 2a933d5fd2dcc06b4af949060bcc7094735c8440b3eb24c7b1a8275e3673132e1b1c6733af3eadb944e7f3b4edb38126953246a08d7a2236ba8a5a5fb8220f4c +EBUILD xfitsview-2.2-r2.ebuild 704 SHA256 aff837d8c2ab27995d9e07894efa32b0447a738caf1162742e1d0238b89b8a5f SHA512 b82c13d884fff8ae6b84901075b4de982145d288deec1b95c1e83e62e111d0ef99d435ab8917d8acd653de9dfd40e71d9c3dee2c3a187fd009a6177838aea16e WHIRLPOOL 269f3eb9209d2c263acadc7e510d248a66f8d4bb21e4b4d1eaed6fe3ae3a10bc8713ccef4452f9892d7a3196f060a633699ea5a6f0df06ac1e49289d8e555903 +MISC ChangeLog 3054 SHA256 670006ba8a9f66c6e55ec74f991e9bfa31414629057ebc1e2ff24ecc971733c7 SHA512 98051f16a5fc6bb5911619aa0cfbd5cc6c16e9f05e1a7877b4da2bdf067061df6deee6257b296d6e2488eebf87fc92e1a27cca4a0028eb031f7cbdcc9d787819 WHIRLPOOL 014f87677db07f18794c9a8bff083b588bfe4c73432dcdad4481a9c2cd6a3de3b8e321eb1f1291c3a5feff6ad55ea073ed1211b1f1c38f7976d408219944952e +MISC ChangeLog-2015 1701 SHA256 19a4a159f5a415a5299192b57425ee11086f9a42fb77d57e1146ebd782fb14ed SHA512 902c938245a8e327b8aa2c97349e6754d74f4773333a9459e327be996fd6861f2329b95ba6ad27ed7816463fd31aa207ed9ace01787553d6f630acca103b0111 WHIRLPOOL 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CFLAGS = -Iinclude -Ifitssubs @MOTIF_CPPFLAGS@ @X_CFLAGS@ \ + $(DEBUG) $(OSFLAGS) @CFLAGS@ +-LIBS = @MOTIF_LIBS@ -lfitsLib +-LDFLAGS = @MOTIF_LDFLAGS@ @X_LIBS@ -L$(LIBDIR) ++LIBS = @MOTIF_LIBS@ @X_LIBS@ -L$(LIBDIR) -lfitsLib ++LDFLAGS = @LDFLAGS@ @MOTIF_LDFLAGS@ + + all: $(TARGETS) + + # update source/object directory + srcupdate: +- cd src; $(MAKE) ++ $(MAKE) -C src + + # update fitssubs source/object directory + fitsupdate: +- cd fitssubs; $(MAKE) ++ $(MAKE) -C fitssubs + + # update fitssubs library directory +-libupdate: +- cd lib; $(MAKE) RANLIB="$(RANLIB)" ++libupdate: fitsupdate srcupdate ++ $(MAKE) RANLIB="$(RANLIB)" -C lib + + # Link Obitview +-XFITSview: lib/$(ARCH)/libfitsLib.a src/*.c XFITSview.c +- $(CC) XFITSview.c -o XFITSview $(CFLAGS) src/*.o $(LDFLAGS) $(LIBS) ++XFITSview: XFITSview.c libupdate ++ $(CC) $(LDFLAGS) XFITSview.c -o XFITSview $(CFLAGS) src/*.o $(LIBS) + + # make gzipped tar backup of directory + backup: +--- a/fitssubs/Makefile.in ++++ b/fitssubs/Makefile.in +@@ -69,7 +69,7 @@ + + + # create library directory if needed +-../lib/$(ARCH): ../lib ++$(LIBDIR): ../lib + mkdir ../lib/$(ARCH) + + clean: diff --git a/sci-astronomy/xfitsview/metadata.xml b/sci-astronomy/xfitsview/metadata.xml new file mode 100644 index 000000000000..72e2a3d58ec3 --- /dev/null +++ b/sci-astronomy/xfitsview/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-astronomy@gentoo.org</email> + <name>Gentoo Astronomy Project</name> +</maintainer> +<longdescription lang="en"> + XFITSview is a Graphical User Interface based on the Motif library to + visualize astronomical images in the FITS format. It's a fairly simple + program useful for doing simple astrometry. +</longdescription> +</pkgmetadata> diff --git a/sci-astronomy/xfitsview/xfitsview-2.2-r2.ebuild b/sci-astronomy/xfitsview/xfitsview-2.2-r2.ebuild new file mode 100644 index 000000000000..ff1ebd1455cc --- /dev/null +++ b/sci-astronomy/xfitsview/xfitsview-2.2-r2.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +MY_PN=XFITSview +MY_P=${MY_PN}${PV} + +DESCRIPTION="Viewer for astronomical images in FITS format" +HOMEPAGE="http://www.nrao.edu/software/fitsview/" +SRC_URI="ftp://ftp.cv.nrao.edu/fits/os-support/unix/xfitsview/${PN}${PV}.tgz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND=">=x11-libs/motif-2.3:0" +RDEPEND="${DEPEND}" + +S=${WORKDIR}/${MY_PN} + +DOCS=( README changes notes.text ) +PATCHES=( "${FILESDIR}"/${P}-build_system.patch ) + +src_prepare() { + default + find "${S}" -name '*old.c' -delete || die +} + +src_install() { + dobin XFITSview + einstalldocs +} |