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path: root/sci-chemistry/autodock_vina/files/autodock_vina-1.2.5-gentoo.patch
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diff -urN AutoDock-Vina-1.2.5.orig/build/linux/debug/Makefile AutoDock-Vina-1.2.5/build/linux/debug/Makefile
--- AutoDock-Vina-1.2.5.orig/build/linux/debug/Makefile	2024-03-05 13:23:49.210511903 +0300
+++ AutoDock-Vina-1.2.5/build/linux/debug/Makefile	2024-03-05 13:25:34.028499976 +0300
@@ -1,7 +1,7 @@
 BASE=/usr
 BOOST_VERSION=
 BOOST_INCLUDE = $(BASE)/include
-C_PLATFORM=-static -pthread
+C_PLATFORM=-pthread
 GPP=g++
 C_OPTIONS= -g -std=gnu++11
 BOOST_LIB_VERSION=
diff -urN AutoDock-Vina-1.2.5.orig/build/linux/release/Makefile AutoDock-Vina-1.2.5/build/linux/release/Makefile
--- AutoDock-Vina-1.2.5.orig/build/linux/release/Makefile	2024-03-05 13:23:49.213845279 +0300
+++ AutoDock-Vina-1.2.5/build/linux/release/Makefile	2024-03-05 13:26:10.285621339 +0300
@@ -1,7 +1,7 @@
 BASE=/usr/local
 BOOST_VERSION=
 BOOST_INCLUDE = $(BASE)/include
-C_PLATFORM=-static -pthread
+C_PLATFORM=-pthread
 GPP=g++
 C_OPTIONS= -O3 -DNDEBUG -std=c++11
 BOOST_LIB_VERSION=
diff -urN AutoDock-Vina-1.2.5.orig/build/makefile_common AutoDock-Vina-1.2.5/build/makefile_common
--- AutoDock-Vina-1.2.5.orig/build/makefile_common	2024-03-05 13:23:49.213845279 +0300
+++ AutoDock-Vina-1.2.5/build/makefile_common	2024-03-05 13:28:30.557370911 +0300
@@ -14,7 +14,7 @@
 #CC = ${GPP} ${C_PLATFORM} -ansi -pedantic -Wno-long-long ${C_OPTIONS} $(INCFLAGS)
 CC = ${GPP} ${C_PLATFORM} -ansi -Wno-long-long ${C_OPTIONS} $(INCFLAGS)
 
-LDFLAGS = -L$(BASE)/lib -L.
+LDFLAGS = -L.
 
 # test if boost_thread-mt exists, this is
 # necessary as some versions of boost only
@@ -32,22 +32,22 @@
 ifeq ($(BOOST_STATIC), y)
 LIBS = ${BASE}/lib/libboost_system${BOOST_LIB_VERSION}.a ${BASE}/lib/libboost_thread${threadmt}${BOOST_LIB_VERSION}.a ${BASE}/lib/libboost_serialization${BOOST_LIB_VERSION}.a ${BASE}/lib/libboost_filesystem${BOOST_LIB_VERSION}.a ${BASE}/lib/libboost_program_options${BOOST_LIB_VERSION}.a
 else
-LIBS = -l boost_system${BOOST_LIB_VERSION} -l boost_thread${threadmt}${BOOST_LIB_VERSION} -l boost_serialization${BOOST_LIB_VERSION} -l boost_filesystem${BOOST_LIB_VERSION} -l boost_program_options${BOOST_LIB_VERSION}#-l pthread
+LIBS = -l boost_system -l boost_thread -l boost_serialization -l boost_filesystem -l boost_program_options -l pthread
 endif
 
 .SUFFIXES: .cpp .o
 
 %.o : ../../../src/lib/%.cpp 
-	$(CC) $(CFLAGS) -o $@ -c $< 
+	$(CC) $(CXXFLAGS) -o $@ -c $< 
 
 %.o : ../../../src/design/%.cpp 
-	$(CC) $(CFLAGS) -I ../../../src/lib -o $@ -c $< 
+	$(CC) $(CXXFLAGS) -I ../../../src/lib -o $@ -c $< 
 	
 %.o : ../../../src/main/%.cpp 
-	$(CC) $(CFLAGS) -I ../../../src/lib -o $@ -c $< 
+	$(CC) $(CXXFLAGS) -I ../../../src/lib -o $@ -c $< 
 
 %.o : ../../../src/split/%.cpp 
-	$(CC) $(CFLAGS) -I ../../../src/lib -o $@ -c $< 
+	$(CC) $(CXXFLAGS) -I ../../../src/lib -o $@ -c $< 
 
 all: vina vina_split