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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
MY_PV="${PV/_}"
MY_P="${PN}${MY_PV}"
DESCRIPTION="Intelligent algorithms for DNA searches"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="
ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${MY_P}.tar.gz
https://dev.gentoo.org/~mgorny/dist/${P}-patchset.tar.bz2
"
S="${WORKDIR}"/${MY_P}
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="doc"
RDEPEND="~sci-biology/hmmer-2.3.2"
DEPEND="${RDEPEND}"
BDEPEND="
app-shells/tcsh
dev-lang/perl
virtual/latex-base
"
PATCHES=(
"${WORKDIR}"/${P}-patchset/${P}-glibc-2.10.patch
"${WORKDIR}"/${P}-patchset/${P}-cflags.patch
)
src_prepare() {
default
cd docs || die
cat ../src/models/*.tex ../src/dynlibsrc/*.tex | perl gettex.pl > temp.tex || die
cat wise2api.tex temp.tex apiend.tex > api.tex || die
eapply "${FILESDIR}"/${PN}-api.tex.patch
}
src_compile() {
tc-export CC
emake -C src all
if use doc; then
cd docs || die
for i in api appendix dynamite wise2 wise3arch; do
latex ${i} || die
latex ${i} || die
dvips ${i}.dvi -o || die
done
fi
}
src_test() {
cd src || die
WISECONFIGDIR="${S}/wisecfg" emake test
}
src_install() {
dobin src/bin/* src/dynlibsrc/testgendb
insinto /usr/share/${PN}
doins -r wisecfg
use doc && dodoc docs/*.ps
newenvd "${WORKDIR}"/${P}-patchset/${PN}-env 24wise
}
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