blob: e07ebe1a613f20efbef29811d44af1893fd9c7e5 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
|
diff --git a/Makefile b/Makefile
index 75fc47a..4a19140 100644
--- a/Makefile
+++ b/Makefile
@@ -15,6 +15,8 @@ CXX = g++
# c) RELEASE mode
################################################################################
+OPT_CXXFLAGS = -O3 -W -Wall -pedantic -funroll-loops
+
OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
# debug mode
@@ -25,7 +27,7 @@ OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
# release mode
#CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -mmmx -msse -msse2 -mfpmath=sse -march=pentium4 -mcpu=pentium4 -funroll-loops -fomit-frame-pointer
-CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -funroll-loops
+CXXFLAGS = $(OPT_CXXFLAGS) -DNDEBUG $(OTHERFLAGS)
################################################################################
# 3) Dependencies
@@ -37,19 +39,19 @@ TARGETS = probcons compare project makegnuplot
all : $(TARGETS)
probcons : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h Main.cc
- $(CXX) $(CXXFLAGS) -lm -o probcons Main.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o probcons Main.cc -lm
compare : MultiSequence.h Sequence.h FileBuffer.h SafeVector.h CompareToRef.cc
- $(CXX) $(CXXFLAGS) -o compare CompareToRef.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o compare CompareToRef.cc
fixref : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h FixRef.cc
- $(CXX) $(CXXFLAGS) -o fixref FixRef.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o fixref FixRef.cc
project : MultiSequence.h Sequence.h SafeVector.h ProjectPairwise.cc
- $(CXX) $(CXXFLAGS) -o project ProjectPairwise.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o project ProjectPairwise.cc
makegnuplot : MakeGnuPlot.cc
- $(CXX) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc
+ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc
.PHONY : clean
clean:
|
