blob: cb2d16791ee3a6cd37232c1c8465ddb315575717 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
|
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit cmake
DESCRIPTION="Fast inference of approximately-maximum-likelihood phylogenetic trees"
HOMEPAGE="http://www.microbesonline.org/fasttree/"
SRC_URI="
http://www.microbesonline.org/fasttree/FastTree-${PV}.c
http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-${PV}.c
http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-${PV}.tar.gz
"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="double-precision openmp cpu_flags_x86_sse3"
REQUIRED_USE="?? ( double-precision cpu_flags_x86_sse3 )"
DOCS=( README )
PATCHES=( "${FILESDIR}"/${P}-format-security.patch )
src_unpack() {
mkdir "${S}" || die
cd "${S}" || die
unpack ${A}
cp "${DISTDIR}"/{FastTreeUPGMA-${PV}.c,FastTree-${PV}.c} . || die
cp "${FILESDIR}"/CMakeLists.txt . || die
}
src_configure() {
local mycmakeargs=(
-DVERSION="${PV}"
-DHAS_SSE3=$(usex cpu_flags_x86_sse3)
-DUSE_OPENMP=$(usex openmp)
-DUSE_DOUBLE=$(usex double-precision)
)
cmake_src_configure
}
|
