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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit toolchain-funcs
DESCRIPTION="An MPI implemention of the ClustalW general purpose multiple alignment algorithm"
HOMEPAGE="http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php"
SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="mpi-njtree static-pairalign"
DEPEND="virtual/mpi"
RDEPEND="${DEPEND}"
PATCHES=(
"${FILESDIR}"/${P}-makefile.patch
"${FILESDIR}"/${P}-fno-common.patch
)
src_prepare() {
default
if use mpi-njtree; then
sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \
die "Failed to configure MPI code for NJ trees"
fi
if use static-pairalign; then
sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \
die "Failed to configure static scheduling for pair alignments"
fi
}
src_install() {
dobin clustalw-mpi
newdoc README.clustalw-mpi README
}
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