4 files changed, 0 insertions, 363 deletions
diff --git a/sci-physics/Manifest.gz b/sci-physics/Manifest.gz
index 8520716f06bb..ee1d685e4880 100644
--- a/sci-physics/Manifest.gz
+++ b/sci-physics/Manifest.gz
diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest
index 704f0661bb12..19c4753bf425 100644
--- a/sci-physics/root/Manifest
+++ b/sci-physics/root/Manifest
@@ -4,13 +4,11 @@ AUX root-6.12.04-no-opengl.patch 763 BLAKE2B 7f93aac3941dd5906768cd07c87a421137d
 AUX root-6.12.04-z3.patch 1155 BLAKE2B 31d099bb260a030d88fcfbe0c9c5a7953738619b216da4140e087b29fead0bfd05bd22aa75da99521689decfb54caa23e0b50a9be9c34fe2fd75596b99b13092 SHA512 ca82ed6f3a0eb9e0ae13a0c354eab0a7c9c18e93ef444418f5786decdd8600184a6c2d5deb6d54d1a852076988645a0fbd215459cd15f5569f54606d74ee3e18
 AUX root-6.12.06_cling-runtime-sysroot.patch 989 BLAKE2B 8202cc8f2bf72cc25642d0a03ba26c3969069b291a6a22188879dbedbf0c3c496149f79f671d0eb51d81d0ee36565660d136b4741f5d018c2b05325ff08381f0 SHA512 c96dee9843da1051c54bd6870ef0a04714944ffe1f86800c9a51b8eb8ef84107d3315d3a708dcc0b651248af4bec362c7f31695514505045aeda9c793d40dc58
 AUX root-6.14.06-oracle.patch 666 BLAKE2B 8ca54fa3d6d836805a88f3ff713e34c1d5db8ffabe4eab7d213d4e0d6a3750cbe0bc8fd14e40ff98f3a4a225b641ebfc6abcf0d34034f90718b0567935bb0209 SHA512 095678f4b3e277cf9b3cd64e0811e20d9c486f2ed524792e55b087441e652ea7b9ee9c2358319ae2be6e4b35828873669d5b9c89f61d68aaa76db62abc4c5a46
-AUX root-6.16.00-disable-header-search.patch 1670 BLAKE2B cc9fda55bc867585432d9acb7dcde6cefa022226c84034bd5c4ba6e286d083ac330ac16ae0f119b5aaf3763cc93ada8c6592096333f55b6ff374ccdd09592e33 SHA512 99e8998c18e70ea9e352abf9839252319e3d8a53bac3a0f777d81e48b88bfd235a6e8386eceb1b50e1202b53088a82cbe6e1576e9137e0e5db59da7cb1761bae
 DIST root_v6.12.06.source.tar.gz 162284452 BLAKE2B 944b5e899677bab40842d7ec969ff08cfa470e63be9a02b948a49ae088e8da72ce433a5071d9196bfd98f71e6861b1bda285354012620eee6c61cffcee71a0c8 SHA512 3d44749ccfc3d40a2f516ae53ef40fb244ed785eee0dbc18ff822bbb811a15b943039d30282ef5358a283d485e62531880c877ec77a86089503b06d6f37e42e1
 DIST root_v6.14.08.source.tar.gz 162474562 BLAKE2B f8bfdabb4d91bbdfbab0b17626fff1f8aa265292996d857025cbd1543306f3ec540a1afb080788bfc7149ea835932b59d7c54dcd802354e31294ba2e5e9d2366 SHA512 827e39efbf3c69429a0a256127ca9f87550d9084c34c715bddccbf87a8c111c367b9a0ac6882aac747c9b48f4a3effb3747b4df567429910c93ee64dfe35df5b
 DIST root_v6.16.00.source.tar.gz 164836293 BLAKE2B 9d8f02631bdc1fa1775cbdaf50dd1feacd9b3c86b81d679ba6f0ca3c5787cd1d22ef7c33358b608361a01ad4f0aff3e8c749649d24773a35c52ce87f808d08f5 SHA512 17e5b9815973773e30ff83c2f4028e9e93691c1ecb824c162c8b3e02d1f6666fb8e0b72a5d0652a90032af146d92d271cbffcd634fb6fe6a63bdf46d672789bf
 EBUILD root-6.12.06-r9.ebuild 7754 BLAKE2B 312e1b90cffa62547d03ea7274b5812df3a690539a03464c89c681c9589b3895a075bc83fe056a7507f5afd25b3744200ad0b90cb617debb59bffd3a280efcf8 SHA512 3016c0308adf200ab1b4a06752bb40d04df4de63bbe846b0afb89c1555af7779677711a4e78ce6ee90c6d27e4c471ab3c46bd46812b46b6f40c0d6ba024cfe11
 EBUILD root-6.14.08-r2.ebuild 8018 BLAKE2B 3553813ada68f33a841265dfdf5c81c1243e06cc9881739d600d2c7ae35c99fe56b882f11e8a23680b77e5b39d9465b2d7bdf5c84ba0daf5fddcc672980d2dd4 SHA512 437ae540021e46f02fba66a816c860180da6b7fd30d780697b67e81492faf239932219c0799acea367e164ccb4e32fcf781c3f071ad340bb5fd1791b82478d22
-EBUILD root-6.16.00-r1.ebuild 8104 BLAKE2B b6669f9dec7cdb59eba38a282a3d9e4c9fe55e10e8c3782cc593b6e925d1d9a5c0b6872000a8f0587356c111b5a2fa9bbbda7b2f12a83e67449b4d9d8fe7ca83 SHA512 ca85f4a383d2fe8abd68bc9d3ec606ef5d7d8bb47216ad3a5272185370a8497c9b1f3668a9135900fa64b7c7897b4b12c0d4d910001667047aa564f6089e9e17
 EBUILD root-6.16.00.ebuild 8047 BLAKE2B ee28bae5ee066baa9ab753927ca9e30331955238e22bc3cce402a1a2dfd29ee29579dc504128467e2b5aae2cefe30e0fdc359b760caf388618f5d3fd201c2a38 SHA512 4e6aef4125629df5e1a3a2cf8b394155fe63fc0c6afd94155329fd443cfaad392aacd6eea903f489dbb16be2b1925a6a9a011e11a478e182f728eff3b74e5608
 EBUILD root-9999.ebuild 8307 BLAKE2B 1932ca3501767e729fab5658681c75d75ea7b839fda2f43777f5ff76d9cfbdd589793378cda3119f5e1457d48ffe42d116d628ccc36148c270b67e56af407068 SHA512 b6ee00de46d9ced77e54182b750810bd7548de48ce8aa63f4a898b5df7604fe06685cfc7015b2a61556ae1c8284f93ccd5492559285ef232b14881ac9c461aa5
 MISC metadata.xml 3079 BLAKE2B a67a71c5dcde9c3d05420b7edefeee32a8e623e10d03f75169a02044377106641ed6dc96c65aa71f42c94c4b29777c0267e9163870cbb392e1dc7715b8ccc542 SHA512 24bb9b7d0d0263f363639f4861a071bfb7f1bdd5e15ec4b166c44114b25343edb008f7ac896dd899cbcdd068abd762aa84924a6e50384ee214de28beb08cfd2a
diff --git a/sci-physics/root/files/root-6.16.00-disable-header-search.patch b/sci-physics/root/files/root-6.16.00-disable-header-search.patch
deleted file mode 100644
index 06748eb64312..000000000000
--- a/sci-physics/root/files/root-6.16.00-disable-header-search.patch
+++ /dev/null
@@ -1,38 +0,0 @@
-From: Benda Xu <heroxbd@gentoo.org>
-Date: 2019-03-23
-Subject: Remove header expansion logic from module cmake helper.
-
-Description: ROOT module cmake helper by default expands header inclusion to
-absolute path.  In Gentoo, that will capture PORTAGE_TMPDIR resulting in various
-runtime bugs. By removing this convolved logic, headers are untouched and become
-more predictible for rootcling at runtime.
-
-Typical bug it solves:
-
-  Error in cling::AutoloadingVisitor::InsertIntoAutoloadingState:
-    Missing FileEntry for /var/tmp/portage/sci-physics/JSAP-479/work/JSAP-479/DataType/JPSimOutput.hh
-    requested to autoload type JPSimTruthTree_t
-  Error in cling::AutoloadingVisitor::InsertIntoAutoloadingState:
-    Missing FileEntry for /var/tmp/portage/sci-physics/JSAP-479/work/JSAP-479/DataType/JPSimOutput.hh
-    requested to autoload type JPSimTriggerInfoTree_t
-
-Forwarded: No need. Gentoo specific.
-
---- a/cmake/modules/RootNewMacros.cmake	2019-01-23 16:23:37.000000000 +0800
-+++ b/cmake/modules/RootNewMacros.cmake	2019-02-25 00:18:04.000000000 +0800
-@@ -250,14 +250,7 @@ function(ROOT_GENERATE_DICTIONARY dictio
-       list(APPEND headerfiles ${fp})
-       list(APPEND _list_of_header_dependencies ${fp})
-     else()
--      find_file(headerFile ${fp} HINTS ${localinclude} ${incdirs} NO_DEFAULT_PATH)
--      find_file(headerFile ${fp} NO_SYSTEM_ENVIRONMENT_PATH)
--      if(headerFile)
--        list(APPEND headerfiles ${headerFile})
--        list(APPEND _list_of_header_dependencies ${headerFile})
--      else()
--        list(APPEND headerfiles ${fp})
--      endif()
-+      list(APPEND headerfiles ${fp})
-       unset(headerFile CACHE)
-     endif()
-   endforeach()
diff --git a/sci-physics/root/root-6.16.00-r1.ebuild b/sci-physics/root/root-6.16.00-r1.ebuild
deleted file mode 100644
index b6b7b6b7a011..000000000000
--- a/sci-physics/root/root-6.16.00-r1.ebuild
+++ /dev/null
@@ -1,323 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-CMAKE_BUILD_TYPE=Release
-# ninja does not work due to fortran
-CMAKE_MAKEFILE_GENERATOR=emake
-FORTRAN_NEEDED="fortran"
-PYTHON_COMPAT=( python2_7 python3_{4,5,6,7} )
-
-inherit cmake-utils cuda eapi7-ver elisp-common eutils fortran-2 \
-	llvm prefix python-single-r1 toolchain-funcs
-
-DESCRIPTION="C++ data analysis framework and interpreter from CERN"
-HOMEPAGE="https://root.cern"
-SRC_URI="https://root.cern/download/${PN}_v${PV}.source.tar.gz"
-
-IUSE="+X aqua +asimage +c++11 c++14 c++17 cuda +davix emacs +examples
-	fits fftw fortran +gdml graphviz +gsl http jemalloc kerberos ldap
-	libcxx memstat +minuit mysql odbc +opengl oracle postgres prefix
-	pythia6 pythia8 +python qt5 R +roofit root7 shadow sqlite +ssl
-	table +tbb test +threads +tiff +tmva +unuran vc xinetd +xml xrootd
-	zeroconf"
-
-SLOT="$(ver_cut 1-2)/$(ver_cut 3)"
-LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA"
-KEYWORDS="~amd64 ~x86"
-
-REQUIRED_USE="
-	^^ ( c++11 c++14 c++17 )
-	cuda? ( tmva !c++17 )
-	!X? ( !asimage !opengl !qt5 !tiff )
-	davix? ( ssl xml )
-	python? ( ${PYTHON_REQUIRED_USE} )
-	qt5? ( root7 )
-	root7? ( || ( c++14 c++17 ) )
-	tmva? ( gsl )
-"
-
-CDEPEND="
-	app-arch/lz4
-	app-arch/xz-utils
-	fortran? ( dev-lang/cfortran )
-	dev-libs/libpcre:3
-	dev-libs/xxhash
-	media-fonts/dejavu
-	media-libs/freetype:2
-	media-libs/libpng:0=
-	sys-devel/llvm:5=
-	sys-libs/ncurses:=
-	sys-libs/zlib
-	X? (
-		x11-libs/libX11:0
-		x11-libs/libXext:0
-		x11-libs/libXft:0
-		x11-libs/libXpm:0
-		opengl? (
-			media-libs/ftgl:0=
-			media-libs/glew:0=
-			virtual/opengl
-			virtual/glu
-			x11-libs/gl2ps:0=
-		)
-		qt5? (
-			dev-qt/qtcore:5
-			dev-qt/qtgui:5
-			dev-qt/qtwebengine:5[widgets]
-		)
-	)
-	asimage? ( || (
-		media-libs/libafterimage[gif,jpeg,png,tiff?]
-		>=x11-wm/afterstep-2.2.11[gif,jpeg,png,tiff?]
-	) )
-	zeroconf? ( net-dns/avahi[mdnsresponder-compat] )
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-9.0 )
-	davix? ( net-libs/davix )
-	emacs? ( virtual/emacs )
-	fftw? ( sci-libs/fftw:3.0= )
-	fits? ( sci-libs/cfitsio:0= )
-	graphviz? ( media-gfx/graphviz )
-	gsl? ( sci-libs/gsl:= )
-	http? ( dev-libs/fcgi:0= )
-	jemalloc? ( dev-libs/jemalloc )
-	kerberos? ( virtual/krb5 )
-	ldap? ( net-nds/openldap:0= )
-	libcxx? ( sys-libs/libcxx )
-	unuran? ( sci-mathematics/unuran:0= )
-	minuit? ( !sci-libs/minuit )
-	mysql? ( dev-db/mysql-connector-c )
-	odbc? ( || ( dev-db/libiodbc dev-db/unixODBC ) )
-	oracle? ( dev-db/oracle-instantclient-basic )
-	postgres? ( dev-db/postgresql:= )
-	pythia6? ( sci-physics/pythia:6 )
-	pythia8? ( sci-physics/pythia:8 )
-	python? ( ${PYTHON_DEPS} )
-	R? ( dev-lang/R )
-	shadow? ( virtual/shadow )
-	sqlite? ( dev-db/sqlite:3 )
-	ssl? ( dev-libs/openssl:0= )
-	tbb? ( >=dev-cpp/tbb-2018 )
-	tmva? ( dev-python/numpy[${PYTHON_USEDEP}] )
-	vc? ( dev-libs/vc:= )
-	xml? ( dev-libs/libxml2:2= )
-	xrootd? ( net-libs/xrootd:0= )
-"
-
-DEPEND="${CDEPEND}
-	virtual/pkgconfig"
-
-RDEPEND="${CDEPEND}
-	xinetd? ( sys-apps/xinetd )"
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-6.12.06_cling-runtime-sysroot.patch
-	"${FILESDIR}"/${PN}-6.16.00-disable-header-search.patch
-)
-
-pkg_setup() {
-	LLVM_MAX_SLOT=5 llvm_pkg_setup
-
-	use fortran && fortran-2_pkg_setup
-	use python && python-single-r1_pkg_setup
-
-	elog "There are extra options on packages not available in Gentoo."
-	elog "You can use the environment variable EXTRA_ECONF to enable"
-	elog "these packages. For example, for Vdt you would set:"
-	elog "EXTRA_ECONF=\"-Dbuiltin_vdt=ON -Dvdt=ON\""
-}
-
-src_prepare() {
-	cmake-utils_src_prepare
-
-	sed -i "/CLING_BUILD_PLUGINS/d" interpreter/CMakeLists.txt || die
-
-	# CSS should use local images
-	sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed"
-
-	hprefixify core/clingutils/CMakeLists.txt
-}
-
-# Note: ROOT uses bundled clang because it is patched and API-incompatible
-#       with vanilla clang. The patches enable the C++ interpreter to work.
-#       Since ROOT installs many files into /etc (>100MB in total) that don't
-#       really belong there, we install it into another directory to avoid
-#       making /etc too big.
-
-src_configure() {
-	local mycmakeargs=(
-		-DCMAKE_C_FLAGS="${CFLAGS}"
-		-DCMAKE_CXX_FLAGS="${CXXFLAGS}"
-		-DPYTHON_EXECUTABLE="${PYTHON}"
-		-DLLVM_CONFIG="$(type -P "${CHOST}-llvm-config")"
-		-DCMAKE_INSTALL_PREFIX="${EPREFIX%/}/usr/lib/${PN}/$(ver_cut 1-2)"
-		-DCMAKE_INSTALL_MANDIR="${EPREFIX%/}/usr/lib/${PN}/$(ver_cut 1-2)/share/man"
-		-DCMAKE_INSTALL_LIBDIR="lib"
-		-DDEFAULT_SYSROOT="${EPREFIX}"
-		-DCLING_BUILD_PLUGINS=OFF
-		-Dexplicitlink=ON
-		-Dexceptions=ON
-		-Dfail-on-missing=ON
-		-Dgnuinstall=OFF
-		-Dshared=ON
-		-Dsoversion=ON
-		-Dbuiltin_llvm=OFF
-		-Dbuiltin_clang=ON
-		-Dbuiltin_afterimage=OFF
-		-Dbuiltin_cfitsio=OFF
-		-Dbuiltin_davix=OFF
-		-Dbuiltin_fftw3=OFF
-		-Dbuiltin_freetype=OFF
-		-Dbuiltin_ftgl=OFF
-		-Dbuiltin_gl2ps=OFF
-		-Dbuiltin_glew=OFF
-		-Dbuiltin_gsl=OFF
-		-Dbuiltin_lz4=OFF
-		-Dbuiltin_lzma=OFF
-		-Dbuiltin_openssl=OFF
-		-Dbuiltin_pcre=OFF
-		-Dbuiltin_tbb=OFF
-		-Dbuiltin_unuran=OFF
-		-Dbuiltin_vc=OFF
-		-Dbuiltin_vdt=OFF
-		-Dbuiltin_veccore=OFF
-		-Dbuiltin_xrootd=OFF
-		-Dbuiltin_xxhash=OFF
-		-Dbuiltin_zlib=OFF
-		-Dx11=$(usex X)
-		-Dxft=$(usex X)
-		-Dafdsmgrd=OFF
-		-Dafs=OFF # not implemented
-		-Dalien=OFF
-		-Dasimage=$(usex asimage)
-		-Dastiff=$(usex tiff)
-		-Dbonjour=$(usex zeroconf)
-		-Dlibcxx=$(usex libcxx)
-		-Dccache=OFF # use ccache via portage
-		-Dcastor=OFF
-		-Dchirp=OFF
-		-Dclad=OFF
-		-Dcling=ON # cling=OFF is broken
-		-Dcocoa=$(usex aqua)
-		-Dcuda=$(usex cuda)
-		-Dcxx11=$(usex c++11)
-		-Dcxx14=$(usex c++14)
-		-Dcxx17=$(usex c++17)
-		-Dcxxmodules=OFF # requires clang, unstable
-		-Ddavix=$(usex davix)
-		-Ddcache=OFF
-		-Dfftw3=$(usex fftw)
-		-Dfitsio=$(usex fits)
-		-Dfortran=$(usex fortran)
-		-Dftgl=$(usex opengl)
-		-Dgdml=$(usex gdml)
-		-Dgenvector=ON # genvector=OFF ignored
-		-Dgeocad=OFF
-		-Dgfal=OFF
-		-Dgl2ps=$(usex opengl)
-		-Dglite=OFF # not implemented
-		-Dglobus=OFF
-		-Dgminimal=OFF
-		-Dgsl_shared=$(usex gsl)
-		-Dgviz=$(usex graphviz)
-		-Dhdfs=OFF
-		-Dhttp=$(usex http)
-		-Dimt=$(usex tbb)
-		-Djemalloc=$(usex jemalloc)
-		-Dkrb5=$(usex kerberos)
-		-Dldap=$(usex ldap)
-		-Dmathmore=$(usex gsl)
-		-Dmemstat=$(usex memstat)
-		-Dminimal=OFF
-		-Dminuit2=$(usex minuit)
-		-Dminuit=$(usex minuit)
-		-Dmonalisa=OFF
-		-Dmysql=$(usex mysql)
-		-Dodbc=$(usex odbc)
-		-Dopengl=$(usex opengl)
-		-Doracle=$(usex oracle)
-		-Dpch=ON # pch=OFF is broken
-		-Dpgsql=$(usex postgres)
-		-Dpythia6=$(usex pythia6)
-		-Dpythia8=$(usex pythia8)
-		-Dpython=$(usex python)
-		-Dqt5web=$(usex qt5)
-		-Dqtgsi=OFF
-		-Dqt=OFF
-		-Drfio=OFF
-		-Droofit=$(usex roofit)
-		-Droot7=$(usex root7)
-		-Drootbench=OFF
-		-Droottest=OFF
-		-Drpath=OFF
-		-Druby=OFF # deprecated and broken
-		-Druntime_cxxmodules=OFF # does not work yet
-		-Dr=$(usex R)
-		-Dsapdb=OFF # not implemented
-		-Dshadowpw=$(usex shadow)
-		-Dsqlite=$(usex sqlite)
-		-Dsrp=OFF # not implemented
-		-Dssl=$(usex ssl)
-		-Dtable=$(usex table)
-		-Dtcmalloc=OFF
-		-Dtesting=$(usex test)
-		-Dthread=$(usex threads)
-		-Dtmva=$(usex tmva)
-		-Dtmva-cpu=$(usex tmva)
-		-Dtmva-gpu=$(usex cuda)
-		-Dunuran=$(usex unuran)
-		-Dvc=$(usex vc)
-		-Dvdt=OFF
-		-Dveccore=OFF
-		-Dxml=$(usex xml)
-		-Dxrootd=$(usex xrootd)
-		${EXTRA_ECONF}
-	)
-
-	cmake-utils_src_configure
-}
-
-src_compile() {
-	# needed for hsimple.root
-	addwrite /dev/random
-	cmake-utils_src_compile
-}
-
-src_install() {
-	cmake-utils_src_install
-
-	ROOTSYS=${EPREFIX%/}/usr/lib/${PN}/$(ver_cut 1-2)
-	ROOTENV=$((9999 - $(ver_cut 2)))${PN}-$(ver_cut 1-2)
-
-	cat > ${ROOTENV} <<- EOF || die
-	MANPATH="${ROOTSYS}/share/man"
-	PATH="${ROOTSYS}/bin"
-	ROOTPATH="${ROOTSYS}/bin"
-	LDPATH="${ROOTSYS}/lib"
-	EOF
-
-	if use python; then
-		echo "PYTHONPATH=\"${ROOTSYS}/lib\"" >> ${ROOTENV} || die
-	fi
-
-	doenvd ${ROOTENV}
-
-	if use emacs; then
-		elisp-install ${PN}-$(ver_cut 1-2) "${BUILD_DIR}"/root-help.el
-	fi
-
-	pushd "${D}/${ROOTSYS}" > /dev/null
-
-	rm -r test emacs bin/*.{csh,sh,fish} || die
-
-	if ! use examples; then
-		rm -r tutorials || die
-	fi
-
-	# create versioned symlinks for binaries
-	cd bin;
-	for exe in *; do
-		dosym "${exe}" "/usr/lib/${PN}/$(ver_cut 1-2)/bin/${exe}-$(ver_cut 1-2)"
-	done
-}