diff options
Diffstat (limited to 'sci-mathematics/gfan')
| -rw-r--r-- | sci-mathematics/gfan/Manifest | 7 | ||||
| -rw-r--r-- | sci-mathematics/gfan/files/gfan-0.5-double-declare-fix.patch | 12 | ||||
| -rw-r--r-- | sci-mathematics/gfan/files/gfan-0.5-gcc6.1-compat.patch | 70 | ||||
| -rw-r--r-- | sci-mathematics/gfan/gfan-0.5-r1.ebuild | 38 | ||||
| -rw-r--r-- | sci-mathematics/gfan/metadata.xml | 11 |
5 files changed, 138 insertions, 0 deletions
diff --git a/sci-mathematics/gfan/Manifest b/sci-mathematics/gfan/Manifest new file mode 100644 index 000000000000..da9c53936ee1 --- /dev/null +++ b/sci-mathematics/gfan/Manifest @@ -0,0 +1,7 @@ +AUX gfan-0.5-double-declare-fix.patch 470 SHA256 3dbd642c4bfb349b89d85ff1eb366b58e9895233c92e4580ba98dfab8a3dca66 SHA512 25f340d5636c1cc719328a00561d9c4e5ab3a67633a9fb0ceb23ca0c771fe579f60678649affdf5be76d189f43a986eecd13a91d9681e847ed8b7c1c4c4ed118 WHIRLPOOL 2bf21ff8abc64d565e96e455a587b3ae6860ad34e4be54d91fe21086f6e7cbc9df22c71e03980e8cfe58fc8262523e1e1e14bace2d8d720135d0b32043f26029 +AUX gfan-0.5-gcc6.1-compat.patch 2000 SHA256 8f6b870a63e58c12af3eb714bf7213b19957ea3a3552452ab8e2c88aa1180447 SHA512 daf9527baf68299063ccdd82b53e92a63584fd5cf432b2d889c4aad08ccff0a31c0a75a7b6defd018021df4f46831ed7727a1bd6ea1b0da1fe9a924f9b208fe9 WHIRLPOOL a12e3799416d6feee4bd36eeb4c0a8e547d0da30d91cd58ebde8d78e78d5741e39d30a0df6004ded89c1cd6b92d60aa7793653bfeb184bf773f416a5d3e4df96 +DIST gfan0.5.tar.gz 1134987 SHA256 d7307c8979220adc0a7ce5acf472178a6c280c963967df6241392ed9954cc1fb SHA512 11a9657adcd5b39f73244450c09b132d8cd19474d0f9151c0127682bc16847537e4096d39e8a0a63b5c6aef6720e54a72bfd361a5271808d5a5595fd2df494fa WHIRLPOOL d01a196972a1b0e87e161b3100fb0ec004fa304f6b9e258321e1bf60724826d4d0fa7b3632c8fb7d5789b6f07a2d934ad35501132a68905f8fed7d4a08bd8ed2 +EBUILD gfan-0.5-r1.ebuild 856 SHA256 5e4c8f5100590c4cd520a7232f8ad9db39475088ad8762d78c03bfaba35e5aeb SHA512 b44f8316297138a2d1c0570b1fbaaa2a26122c28746ddec3bef31319e8ce319bd75084d480dcad61b867988da43d4d632c13a71e3afd732ac7daf0daa3c5509c WHIRLPOOL 27acfea0e08f56626ee1e9be24b132ada2ad34fa34f7c7929b21ebdff64ac8a8f7375da6c408ff8e41ea26bb7709f7379542d1a8fb3e85014752135ce551eec1 +MISC ChangeLog 3063 SHA256 93682d69d05e77aad2e2c78ae3ad728ca9d3480d0511477ff8aad3ba1679c681 SHA512 0bc81e991b5843690af45e232838872dd24a5453590de7c604ac9b98907532375c41acad0e660302c4b5c9ce0d56850e0cfa589558a74faa3329b37d530e4af4 WHIRLPOOL ce757bf7e59e7e7c03d72d91bfb0ab754e17fb8d5e4202f6d542a7e1b7c778ef96b956c1e652939e5a64f1e433b597df77657f460ac77b135c61368271bb98cc +MISC ChangeLog-2015 1836 SHA256 a8321729d8f1c33da45768da76dcf508fbc5067cac6f4d918631cf56c1ca3b32 SHA512 a849940ed46b2635e4eabace0f9f68f3edad66fe700b56a3503e29e23b8d7b2f1f2bc7028cadf06b7d5ab099873c6cd62aa501a946f19c8d505ea870c5ba0ca8 WHIRLPOOL d233f8327efe8ea93074dc7989a1bb0075c5e476dde55835279b3438be5719226fa49838c95944e7fee2efedba61d48fb84559d425e76bab30263fadbd06109b +MISC metadata.xml 398 SHA256 b9c457186c0f8142244dfd6816846213388f328a249295f0a38299b2f5421d61 SHA512 ac0668f6b8af01557b5a29a5aab5f6064f77eaed62e3fc080a5c808a62310dedd935271f58035e7c9b340df582922d2a960f67f148d61779a9a64fc1fbf7457e WHIRLPOOL 7c869ccf772dff7c53e3b4f1543f440f49c26c1520d779bc0f6a818ec47623f7d1a962c8ab095cc20a6df2a72e8099e8593faf6225831c6ccade01606e5ee790 diff --git a/sci-mathematics/gfan/files/gfan-0.5-double-declare-fix.patch b/sci-mathematics/gfan/files/gfan-0.5-double-declare-fix.patch new file mode 100644 index 000000000000..239540884011 --- /dev/null +++ b/sci-mathematics/gfan/files/gfan-0.5-double-declare-fix.patch @@ -0,0 +1,12 @@ +diff -U 3 -dHrN gfan0.5/app_minkowski.cpp gfan0.5-new/app_minkowski.cpp +--- gfan0.5/app_minkowski.cpp 2011-01-23 12:21:47.000000000 -0500 ++++ gfan0.5-new/app_minkowski.cpp 2012-06-29 15:23:48.604280985 -0400 +@@ -160,7 +160,7 @@ + //log0 fprintf(Stderr,"4"); + f.insert(c); + //log0 fprintf(Stderr,"5\n"); +- static int i; ++ // static int i; + //log0 fprintf(Stderr,"inserted:%i\n",++i); + } + log1 fprintf(Stderr,"Resolving symmetries.\n"); diff --git a/sci-mathematics/gfan/files/gfan-0.5-gcc6.1-compat.patch b/sci-mathematics/gfan/files/gfan-0.5-gcc6.1-compat.patch new file mode 100644 index 000000000000..8479557b61bb --- /dev/null +++ b/sci-mathematics/gfan/files/gfan-0.5-gcc6.1-compat.patch @@ -0,0 +1,70 @@ +--- a/app_fiberpolytope.cpp ++++ b/app_fiberpolytope.cpp +@@ -63,7 +63,7 @@ + + /* If the vector configuration B does not have full rank then + change coordinates. */ +- if(rank(B)!=B.getHeight()) ++ if(rank_(B)!=B.getHeight()) + { + FieldMatrix M=integerMatrixToFieldMatrix(B,Q); + M.reduce(false,true);//force integer operations - preserving volume +@@ -83,7 +83,7 @@ + log1 debug<<"Done computing restricting cone\n"; + + debug<<B.getRows(); +- debug<<int(rank(B)); ++ debug<<int(rank_(B)); + + Triangulation2 t(B); + log1 debug<<"Computing initial triangulation\n"; +@@ -143,7 +143,7 @@ + */ + /* If the vector configuration A does not have full rank then + change coordinates. */ +-/* if(rank(A)!=A.getHeight()) ++/* if(rank_(A)!=A.getHeight()) + { + FieldMatrix M=integerMatrixToFieldMatrix(A,Q); + M.reduce(false,true);//force integer operations - preserving volume +--- a/app_secondaryfan.cpp ++++ b/app_secondaryfan.cpp +@@ -307,7 +307,7 @@ + + if(scaleOption.getValue()) + { +- if(rank(A)!=A.getHeight()) ++ if(rank_(A)!=A.getHeight()) + { + cerr << "The vector configuration must have full rank in order to use the scale option.\n"; + assert(0); +@@ -342,7 +342,7 @@ + + /* If the vector configuration A does not have full rank then + change coordinates. */ +- if(rank(A)!=A.getHeight()) ++ if(rank_(A)!=A.getHeight()) + { + FieldMatrix M=integerMatrixToFieldMatrix(A,Q); + M.reduce(false,true);//force integer operations - preserving volume +--- a/matrix.cpp ++++ b/matrix.cpp +@@ -61,7 +61,7 @@ + + #include "linalg.h" + +-int rank(IntegerMatrix const &m) ++int rank_(IntegerMatrix const &m) + { + return integerMatrixToFieldMatrix(m,Q).rank(); + } +--- a/matrix.h ++++ b/matrix.h +@@ -147,6 +147,6 @@ + + FloatMatrix integerToFloatMatrix(IntegerMatrix const &m); + IntegerVector flattenMatrix(IntegerMatrix const &m); +-int rank(IntegerMatrix const &m); ++int rank_(IntegerMatrix const &m); + + #endif diff --git a/sci-mathematics/gfan/gfan-0.5-r1.ebuild b/sci-mathematics/gfan/gfan-0.5-r1.ebuild new file mode 100644 index 000000000000..ec591ee19578 --- /dev/null +++ b/sci-mathematics/gfan/gfan-0.5-r1.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils toolchain-funcs + +DESCRIPTION="computes Groebner fans and tropical varities" +HOMEPAGE="http://www.math.tu-berlin.de/~jensen/software/gfan/gfan.html" +SRC_URI="http://www.math.tu-berlin.de/~jensen/software/gfan/${PN}${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND="dev-libs/gmp[cxx] + sci-libs/cddlib" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${PN}${PV}/" + +PATCHES=( + "${FILESDIR}/${P}-double-declare-fix.patch" + "${FILESDIR}/${P}-gcc6.1-compat.patch" + ) + +src_prepare () { + default + sed -i -e "s/-O2/${CXXFLAGS}/" \ + -e "/GPROFFLAG =/d" \ + -e "s/g++/$(tc-getCXX)/" \ + -e "s/\$(CCLINKER)/& \$(LDFLAGS)/" Makefile || die +} + +src_install() { + emake PREFIX="${ED}/usr" install +} diff --git a/sci-mathematics/gfan/metadata.xml b/sci-mathematics/gfan/metadata.xml new file mode 100644 index 000000000000..abc08ece6082 --- /dev/null +++ b/sci-mathematics/gfan/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-mathematics@gentoo.org</email> + <name>Gentoo Mathematics Project</name> + </maintainer> +<longdescription lang="en"> + gfan is a computer algebra tool to compute Groebner fans and tropical varieties. +</longdescription> +</pkgmetadata> |