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-rw-r--r--sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.4.ebuild40
-rw-r--r--sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.5.ebuild4
-rw-r--r--sci-chemistry/GromacsWrapper/Manifest4
-rw-r--r--sci-chemistry/Manifest.gzbin8527 -> 8532 bytes
-rw-r--r--sci-chemistry/chemical-mime-data/Manifest9
-rw-r--r--sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r4.ebuild52
-rw-r--r--sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.95_pre20171122.ebuild6
-rw-r--r--sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-drop-turbomole-vibrational.patch20
-rw-r--r--sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-namespace-svg.patch16
-rw-r--r--sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-pigz.patch16
-rw-r--r--sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-rsvg-convert-r2.patch36
-rw-r--r--sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-turbomole.patch57
12 files changed, 5 insertions, 255 deletions
diff --git a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.4.ebuild b/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.4.ebuild
deleted file mode 100644
index e5c508fd6ca1..000000000000
--- a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.4.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-DISTUTILS_USE_PEP517=setuptools
-
-if [[ ${PV} = *9999* ]]; then
- scm_eclass=git-r3
- EGIT_REPO_URI="https://github.com/Becksteinlab/${PN}.git"
- EGIT_BRANCH="develop"
- SRC_URI=""
-else
- scm_eclass=vcs-snapshot
- SRC_URI="https://github.com/Becksteinlab/${PN}/archive/release-${PV}.tar.gz -> ${P}.tar.gz"
- KEYWORDS="~amd64 ~x86"
-fi
-
-inherit distutils-r1 ${scm_eclass}
-
-DESCRIPTION="Python framework for Gromacs"
-HOMEPAGE="https://gromacswrapper.readthedocs.io"
-
-LICENSE="GPL-3 LGPL-3"
-SLOT="0"
-IUSE=""
-
-RDEPEND="
- dev-python/six[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- sci-libs/numkit[${PYTHON_USEDEP}]
-"
-BDEPEND="
- ${RDEPEND}
- test? ( >=dev-python/pandas-0.17[${PYTHON_USEDEP}] )
-"
-
-distutils_enable_tests pytest
diff --git a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.5.ebuild b/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.5.ebuild
index e5c508fd6ca1..92f160defd29 100644
--- a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.5.ebuild
+++ b/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.5.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -10,7 +10,6 @@ if [[ ${PV} = *9999* ]]; then
scm_eclass=git-r3
EGIT_REPO_URI="https://github.com/Becksteinlab/${PN}.git"
EGIT_BRANCH="develop"
- SRC_URI=""
else
scm_eclass=vcs-snapshot
SRC_URI="https://github.com/Becksteinlab/${PN}/archive/release-${PV}.tar.gz -> ${P}.tar.gz"
@@ -24,7 +23,6 @@ HOMEPAGE="https://gromacswrapper.readthedocs.io"
LICENSE="GPL-3 LGPL-3"
SLOT="0"
-IUSE=""
RDEPEND="
dev-python/six[${PYTHON_USEDEP}]
diff --git a/sci-chemistry/GromacsWrapper/Manifest b/sci-chemistry/GromacsWrapper/Manifest
index 59c53091950e..f9dc12e907fd 100644
--- a/sci-chemistry/GromacsWrapper/Manifest
+++ b/sci-chemistry/GromacsWrapper/Manifest
@@ -1,5 +1,3 @@
-DIST GromacsWrapper-0.8.4.tar.gz 1955167 BLAKE2B 59f0301263eefaa4d7c139b34a48172c218a76f0f9488477d6203d9cd732098468dae5a73ff46aa74eb2b4433268c77bc265e506129e4c14a357042453d5f97f SHA512 822edc33c77ca4dbfbc1e4172686744345ed3c0d2305f4b19abab15576a1433bbb3b23b96f637398ad4f72cd5414d96ee531ab4a329d3acb462d90b95437a6a5
DIST GromacsWrapper-0.8.5.tar.gz 1958570 BLAKE2B b8f79721a7566117206818144fc7087c4634d7fb71c77abef63dd9565a0655ce6b4a259ea5bf9cb3b5bc13df8f428f58e514f7871192d27a6d463e758e27f4b3 SHA512 8800afdbe92edad35df58e825546797ede1738b9029df0fb57a96e377d7be94f3d21fe1df9d5cb4490d12b984972d63d87e673d3d33af60a7dc8d0453574a5c6
-EBUILD GromacsWrapper-0.8.4.ebuild 911 BLAKE2B 827ac820482bd41895e02a218041fb1668899d7c80e95ee51021a92d6f7fe36452d1012330118266958f8313694b9c655cc32ddf995d62f3b08aad508c912301 SHA512 6d0f23fcc82cfd0097768a98a1d5755fb003437734f2c6ac90ccff21aa8a8c69bac8f7c0dd4803711e249ff66e513b906394394b71313b2a48f9f0bc37b2ce7e
-EBUILD GromacsWrapper-0.8.5.ebuild 911 BLAKE2B 827ac820482bd41895e02a218041fb1668899d7c80e95ee51021a92d6f7fe36452d1012330118266958f8313694b9c655cc32ddf995d62f3b08aad508c912301 SHA512 6d0f23fcc82cfd0097768a98a1d5755fb003437734f2c6ac90ccff21aa8a8c69bac8f7c0dd4803711e249ff66e513b906394394b71313b2a48f9f0bc37b2ce7e
+EBUILD GromacsWrapper-0.8.5.ebuild 891 BLAKE2B f337e51328aa8d4f3ae1c63080a2dfe016b5eb7ddfceea41ac6f8b4429dcb25d62f0c6b16614333240f7386eef99377c20a71293eecb5227909fd7d3008ffaee SHA512 5d19ef9c50dc98316d4891f36b9a4bed7bd31fc20e44c2ec4833ab39d33f7200ff9a336825050ed50b67679f1c6e49aaf1a60ef5997ac7e5ee8d8be5a5c031d2
MISC metadata.xml 483 BLAKE2B 1d8a7e888d8b95bd229ef72894ba02f583e3e3958f9cd5733ab6b466312bac0b0f5a9004135caa37a3ef137e8782fa93ff4bb90f35f31c058d8c528025b193d0 SHA512 70e5dc653ff21a0395b946e5f3548320d2abb8c63ae9f3ce04be6768e20b02ce55a612a2ad12b6c2262529ab753ca9fda02d9bdae7f6ac859bca49bbbad6f75f
diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index c4dade297655..e2d3b7d6c932 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/sci-chemistry/chemical-mime-data/Manifest b/sci-chemistry/chemical-mime-data/Manifest
index 84729e6ca668..997736f7550a 100644
--- a/sci-chemistry/chemical-mime-data/Manifest
+++ b/sci-chemistry/chemical-mime-data/Manifest
@@ -1,11 +1,4 @@
-AUX chemical-mime-data-0.1.94-drop-turbomole-vibrational.patch 934 BLAKE2B 8c35adddc5dbed044a68c1f0f485faf01ae4d6fb4724e82956e9e73292e2b7e37f527a8225fce3fa4b3c6629038086f30912b8bce21d704244dc18ba52673f8a SHA512 f1ca2c08b33f77ccc1355edbbba53971e4c09ed004ec35554617d57cb6dd90c9a8a712ebfe1c7e0b01d9a97790004a048029a9e96323e7a105e9b15408a0d4cd
-AUX chemical-mime-data-0.1.94-namespace-svg.patch 798 BLAKE2B 4ab826dd3c76234c903a740b2e59dd4403d01aff856327d31c6707ab4563931d9fe4d9d57bdc19d6102d63d860eb2d88220844b934aa63cc3be984621ac52d28 SHA512 64addfac817a7f056f381515561b4311936410dc46385a3ded8c65f8fbc3d5dda731c4ec02e9369299c8122e7c43a6dc53005a4957e4165bbf958f683708513d
-AUX chemical-mime-data-0.1.94-pigz.patch 481 BLAKE2B dee47e41645b5d196326fb7439e1a96b3d46983fa9c9ec4295b17676d51f966f48ff51668203e59f18580939337d83d5ae904ef33fe2044dcc62fedd90fcb82e SHA512 a16839c1b88486ed26b4987a22594d0c3d45254d31157560135bdba008e5caa0a372d11e7db858564f1eca75452d2e43509899a91c2a8872465ea06277a1fb6c
-AUX chemical-mime-data-0.1.94-rsvg-convert-r2.patch 1305 BLAKE2B 22809dbd6c769a0dcc88d65c3454702021d9d6e082a50fce9a5f3a28743aafdbcb5e153a90ee43f7a42d4ccd5f98465f91f872e7fabf69086b8ecf1336a60e49 SHA512 4bea8dae65e28657ff75b5b613137c0f89f6de185db79297642616f208e841ba56181044eee194c619bad2c3bfb62454b7839b720d2f32fca0e768b75c842683
-AUX chemical-mime-data-0.1.94-turbomole.patch 2451 BLAKE2B 86b4b08b2af4503e0f8a525ebaa4231a3d0d3727c951b9e957c9fdac790bc41b7f01092350099a64cce66dbb61bc4cbd3654ef91834310c6c7cd1dc156ca87e8 SHA512 1bfa8818d159f0f917a24a06b0bfe926f0854f4242d8c2dbbedcd4210ffd38a459298862dc1d1aedbbe648a933db99c5d647c5409af74f88b03dd3033946df54
AUX chemical-mime-data-0.1.95-turbomole.patch 1924 BLAKE2B 6536df960d2fc87f9d9f5ebb0dcf0a1935d8efa0e811174585e0123c09cb5de55adfb2777b2a130a82b72c4ca66befab8a3790801d0e4d6674cb04c417b91226 SHA512 2eda91dc48a2924c1dce635c4490685f2ec65f7b10c04f85fb7af406d12eed11197be215221c019267fab6e8ba48249ba6a50bdf2ebf30e6b9d021d54df234df
-DIST chemical-mime-data-0.1.94.tar.bz2 146077 BLAKE2B 9996c240446dc9571b6b4afbcdc6cf16a08e11314da9f785490b1b20933b6d18a333132492e30315c08f4441c048ec593a111815253050cfb5ab562aadb784f1 SHA512 7f3d967149f27ab1de53c948dc055959e661e1be9d778e3d56d06bea95769da7770ab5fb66afab6607747ef91ffb1dbbcf921e5f06e3303351781968594b5f00
DIST chemical-mime-data-0.1.95_pre20171122.tar.gz 84515 BLAKE2B 42f76b44408c04e5a254c17502ea2c297727bb58fa3e86b8bca7f0c4c056ae7400b31f06b7d0c64b0712e97ab8a1f82549f44a3677720cd37a301ba99adb3d7a SHA512 a031e7a5bc31a74adcd8e5d827de71b6e0eafdceba16cf6f7407aa0266a9a082b0011963b315d2369f39abf45c4b41cedafccddbc2171673bf96ccbea51a4790
-EBUILD chemical-mime-data-0.1.94-r4.ebuild 1104 BLAKE2B ba7db79e81270fee4f4a2f31b0930f4af5b1601a9481c494ffa812322ef4e44a3803ec2e5bb89b1707ee7723aa112a9b1a8509e93885ea969343f5dc2ecd4fb0 SHA512 a6fd009228745e68bf4ccb589fde3e935b6955be4641e0d02863d683e8a790d0a7abd49df2084adf4dfd47a9b28aabd02c36e7262ceba1c326dcf185dbd77454
-EBUILD chemical-mime-data-0.1.95_pre20171122.ebuild 1243 BLAKE2B 3138a766695780978467e8cbecb1ee5c378a60d68e9b6916a1fa551d9f35780e39058d15a0f3532d40d779b5ad450dec431488bbf9aae3f67568620f0ab7a08c SHA512 363c8bb18212f84718e3a74b5d02fba3060fab69e18f4e0e9b5ad95676ec702a6c7fde1d706f8d94f3f73e9fb0f093fffde708a4434dbe98c9a02ab65c01355f
+EBUILD chemical-mime-data-0.1.95_pre20171122.ebuild 1234 BLAKE2B c8a398a7e66aaec2c977f93f98bb7ac57a9fde8fbf557547217a09120592b9a58c3460d388db2e355fa6515f51291769dadf54d85c7b0fb29a284eeeb166596e SHA512 672a7781cbfd3ea3c0396498ae74f1b615e5d7c945c61f3e69ab0e241db68b4096eb18b7c6faed37456b095a4680ea9490f0eea02cc5c8913734940248f0672a
MISC metadata.xml 403 BLAKE2B 57e1752722094936b1d76d3198ee397d233b3069df3ef15a60b2f25989418736a9d8672b53d78259a2d4f50fa6e5a635331cf1003dd2cbf87f66a60c85e0ba07 SHA512 c689663c874f6b8d63153fd84326dc5b00b733e98f04d763506f4fff4cbee3e642c5b4633ec3b6a6b5d2950928ba318e226eef85ee25cc8ff00c1dc25a87c3b5
diff --git a/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r4.ebuild b/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r4.ebuild
deleted file mode 100644
index e11f018ac371..000000000000
--- a/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r4.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-inherit autotools xdg
-
-DESCRIPTION="A collection of data files to add support for chemical MIME types"
-HOMEPAGE="https://github.com/dleidert/chemical-mime"
-SRC_URI="https://downloads.sourceforge.net/${PN/-data/}/${P}.tar.bz2"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm arm64 x86"
-IUSE=""
-
-RDEPEND="
- x11-misc/shared-mime-info
-"
-DEPEND="${RDEPEND}"
-BDEPEND="
- dev-util/intltool
- dev-util/desktop-file-utils
- dev-libs/libxslt
- || (
- gnome-base/librsvg
- media-gfx/imagemagick[xml,png,svg]
- )
- media-gfx/imagemagick[png]
- virtual/pkgconfig
-"
-
-PATCHES=(
- "${FILESDIR}"/${P}-turbomole.patch
- "${FILESDIR}"/${P}-pigz.patch
- "${FILESDIR}"/${P}-namespace-svg.patch
- "${FILESDIR}"/${P}-rsvg-convert-r2.patch
- # https://github.com/dleidert/chemical-mime/issues/1
- "${FILESDIR}"/${P}-drop-turbomole-vibrational.patch
-)
-
-src_prepare() {
- xdg_src_prepare
- eautoreconf
-}
-
-src_configure() {
- econf \
- --disable-update-database \
- --without-gnome-mime \
- --without-pixmaps \
- --without-kde-mime
-}
diff --git a/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.95_pre20171122.ebuild b/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.95_pre20171122.ebuild
index 64827ef8db67..b6291c211fa1 100644
--- a/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.95_pre20171122.ebuild
+++ b/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.95_pre20171122.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -8,11 +8,11 @@ DESCRIPTION="A collection of data files to add support for chemical MIME types"
HOMEPAGE="https://github.com/dleidert/chemical-mime"
COMMIT="4fd66e3b3b7d922555d1e25587908b036805c45b"
SRC_URI="https://github.com/dleidert/chemical-mime/archive/${COMMIT}.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/${PN/-data/}-${COMMIT}"
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="amd64 arm arm64 x86"
-IUSE=""
RDEPEND="x11-misc/shared-mime-info"
DEPEND="${RDEPEND}"
@@ -28,8 +28,6 @@ PATCHES=(
"${FILESDIR}"/${PN}-0.1.95-turbomole.patch
)
-S="${WORKDIR}/${PN/-data/}-${COMMIT}"
-
src_prepare() {
default
# https://github.com/dleidert/chemical-mime/issues/4
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-drop-turbomole-vibrational.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-drop-turbomole-vibrational.patch
deleted file mode 100644
index 4c25b1a18343..000000000000
--- a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-drop-turbomole-vibrational.patch
+++ /dev/null
@@ -1,20 +0,0 @@
-diff -up chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in.turbomole_vibration chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in
---- chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in.turbomole_vibration 2020-01-29 17:32:45.000000000 +0100
-+++ chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in 2020-01-29 17:32:45.000000000 +0100
-@@ -1401,16 +1401,6 @@
- <specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
- </mime-type>
-
-- <mime-type type="chemical/x-turbomole-vibrational" support="yes">
-- <_comment>Turbomole Vibrational Data File</_comment>
-- <glob pattern="???"/>
-- <sub-class-of type="text/plain"/>
-- <icon kde="qc"/>
-- <supported-by>
-- <application name="viewmol"/>
-- </supported-by>
-- <specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
-- </mime-type>
-
- <mime-type type="chemical/x-vamas-iso14976" cm:support="no">
- <_comment>VAMAS document</_comment>
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-namespace-svg.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-namespace-svg.patch
deleted file mode 100644
index 9860261af403..000000000000
--- a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-namespace-svg.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- icons/hicolor/gnome-mime-chemical.svg | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/icons/hicolor/gnome-mime-chemical.svg b/icons/hicolor/gnome-mime-chemical.svg
-index 1a8d428..804514c 100644
---- a/icons/hicolor/gnome-mime-chemical.svg
-+++ b/icons/hicolor/gnome-mime-chemical.svg
-@@ -5,7 +5,7 @@
- <!ENTITY ns_svg "http://www.w3.org/2000/svg">
- <!ENTITY ns_xlink "http://www.w3.org/1999/xlink">
- ]>
--<svg xmlns="&ns_svg;" xmlns:xlink="&ns_xlink;" xmlns:a="http://ns.adobe.com/AdobeSVGViewerExtensions/3.0/"
-+<svg xmlns:svg="&ns_svg;" xmlns:xlink="&ns_xlink;" xmlns:a="http://ns.adobe.com/AdobeSVGViewerExtensions/3.0/"
- width="128" height="128" viewBox="0 0 128 128" overflow="visible" enable-background="new 0 0 128 128" xml:space="preserve">
- <g id="Layer_1">
- <g>
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-pigz.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-pigz.patch
deleted file mode 100644
index 8b5ccfbc3fd9..000000000000
--- a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-pigz.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- Makefile.am | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/Makefile.am b/Makefile.am
-index 96e03ab..ba0847a 100644
---- a/icons/hicolor/Makefile.am
-+++ b/icons/hicolor/Makefile.am
-@@ -21,7 +21,7 @@ icon_sizes = 16 22 24 32 36 48 64 72 96 128 192
- if BOOL_HICOLOR_THEME
-
- .svg.svgz:
-- gzip $< -c > $@
-+ gzip -c $< > $@
- for size in $(icon_sizes) ; do \
- if test "x$(RSVG)" != "x" ; then \
- $(RSVG) -w $${size} -h $${size} -f png $< $*_$${size}.png ; \
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-rsvg-convert-r2.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-rsvg-convert-r2.patch
deleted file mode 100644
index 55039f8be07e..000000000000
--- a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-rsvg-convert-r2.patch
+++ /dev/null
@@ -1,36 +0,0 @@
---- a/configure.ac.old 2020-03-20 23:32:05.866604992 +0100
-+++ b/configure.ac 2020-03-20 23:32:30.866022834 +0100
-@@ -97,14 +97,12 @@
- AC_PATH_PROG([CONVERT], [convert], [no])
- AC_SUBST([CONVERT])
-
--if test "x$enable_convert" != "xyes" -a "x$CONVERT" = "xno" ; then
-- AC_ARG_VAR(
-- [RSVG],
-- [The 'rsvg' binary with path. Use it to define or override the location of 'rsvg'.]
-- )
-- AC_PATH_PROG([RSVG], [rsvg], [no])
-- AC_SUBST([RSVG])
--fi
-+AC_ARG_VAR(
-+ [RSVG],
-+ [The 'rsvg' binary with path. Use it to define or override the location of 'rsvg'.]
-+)
-+AC_PATH_PROG([RSVG], [rsvg-convert], [no])
-+AC_SUBST([RSVG])
-
- if test "x$RSVG" = "xno" -a "x$CONVERT" = "xno" ; then
- AC_MSG_ERROR([Cannot find rsvg (librsvg binary) or convert (imagemagick). Please install one of them.])
---- a/icons/hicolor/Makefile.am.old 2020-03-20 23:32:54.292414381 +0100
-+++ b/icons/hicolor/Makefile.am 2020-03-20 23:33:40.052179227 +0100
-@@ -23,8 +23,8 @@
- .svg.svgz:
- gzip $< -c > $@
- for size in $(icon_sizes) ; do \
-- if test "x$(RSVG)" != "x" ; then \
-- $(RSVG) -w $${size} -h $${size} -f png $< $*_$${size}.png ; \
-+ if test "x$(RSVG)" != "xno" ; then \
-+ $(RSVG) -w $${size} -h $${size} -f png $< --output $*_$${size}.png ; \
- else \
- $(CONVERT) $< -resize $${size}x$${size} $*_$${size}.png ; \
- fi \
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-turbomole.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-turbomole.patch
deleted file mode 100644
index 852d6b0605be..000000000000
--- a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-turbomole.patch
+++ /dev/null
@@ -1,57 +0,0 @@
-diff -up chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in.turbomole chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in
---- chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in.turbomole 2009-08-10 09:37:06.000000000 +0200
-+++ chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in 2009-08-10 09:40:57.000000000 +0200
-@@ -1290,7 +1290,7 @@
- <specification url="http://ca.expasy.org/sprot/userman.html"/>
- </mime-type>
-
-- <mime-type type="chemical/x-turbomole-basis" support="no">
-+ <mime-type type="chemical/x-turbomole-basis" support="yes">
- <_comment>Turbomole Basis Set File</_comment>
- <glob pattern="basis"/>
- <sub-class-of type="text/plain"/>
-@@ -1304,7 +1304,7 @@
- <specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
- </mime-type>
-
-- <mime-type type="chemical/x-turbomole-control" support="no">
-+ <mime-type type="chemical/x-turbomole-control" support="yes">
- <_comment>Turbomole Control File</_comment>
- <glob pattern="control"/>
- <sub-class-of type="text/plain"/>
-@@ -1320,7 +1320,7 @@
- <specification url="http://www.cosmologic.de/data/DOK_HTML/node230.html"/>
- </mime-type>
-
-- <mime-type type="chemical/x-turbomole-coord" support="no">
-+ <mime-type type="chemical/x-turbomole-coord" support="yes">
- <_comment>Turbomole Coordinate File</_comment>
- <glob pattern="coord"/>
- <glob pattern="*.tmol"/>
-@@ -1335,7 +1335,7 @@
- <specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
- </mime-type>
-
-- <mime-type type="chemical/x-turbomole-grad" support="no">
-+ <mime-type type="chemical/x-turbomole-grad" support="yes">
- <_comment>Turbomole Gradient File</_comment>
- <glob pattern="gradient"/>
- <sub-class-of type="text/plain"/>
-@@ -1383,7 +1383,7 @@
- <specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
- </mime-type>
-
-- <mime-type type="chemical/x-turbomole-scfmo" support="no">
-+ <mime-type type="chemical/x-turbomole-scfmo" support="yes">
- <_comment>Turbomole SCF Molecular Orbital File</_comment>
- <acronym>MO</acronym>
- <expanded-acronym>Molecular Orbital</expanded-acronym>
-@@ -1401,7 +1401,7 @@
- <specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
- </mime-type>
-
-- <mime-type type="chemical/x-turbomole-vibrational" support="no">
-+ <mime-type type="chemical/x-turbomole-vibrational" support="yes">
- <_comment>Turbomole Vibrational Data File</_comment>
- <glob pattern="???"/>
- <sub-class-of type="text/plain"/>