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-rw-r--r--sci-chemistry/Manifest.gzbin8208 -> 8206 bytes
-rw-r--r--sci-chemistry/dssp/Manifest2
-rw-r--r--sci-chemistry/dssp/dssp-4.4.10.ebuild4
-rw-r--r--sci-chemistry/gnome-chemistry-utils/Manifest3
-rw-r--r--sci-chemistry/gnome-chemistry-utils/files/gnome-chemistry-utils-fix_pointer_types.patch30
-rw-r--r--sci-chemistry/gnome-chemistry-utils/gnome-chemistry-utils-0.14.17_p6-r2.ebuild8
-rw-r--r--sci-chemistry/vmd/Manifest4
-rw-r--r--sci-chemistry/vmd/vmd-1.9.4_alpha57-r2.ebuild (renamed from sci-chemistry/vmd/vmd-1.9.4_alpha57.ebuild)2
-rw-r--r--sci-chemistry/vmd/vmd-1.9.4_alpha57-r3.ebuild (renamed from sci-chemistry/vmd/vmd-1.9.4_alpha57-r1.ebuild)2
9 files changed, 44 insertions, 11 deletions
diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index e511ad5ee570..d843e08ae2e9 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index aebec65cb5f0..f2ac48471677 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -8,7 +8,7 @@ DIST dssp-4.4.7.tar.gz 163831 BLAKE2B 195c8fb183df00105098967850b01c0d6acf776f7c
DIST dssp-4.4.8.tar.gz 164050 BLAKE2B 0f048b5425f3ecb0e9278da81e2274e817b5ba5ed33a372d0e4c0b0d0600f9ebee2b125f7411dcc4af5d56e2f86cf0d7f10608467b24dd886ca559f7c4b60e6a SHA512 a21c79e56662d926e8476ffc7ccd84dec182a7bbd98c08b3df61ed88c99ee82e1522b69156cdea0abf96d93bc69a0a491b04662a9312d2681785116074151a61
EBUILD dssp-2.2.1-r3.ebuild 870 BLAKE2B 9b7542d9ec45b60f5671830e5068e1d1cbcca4b82cf22cc0e2d9804c221f9977cfade439cc6e41a67375b438faca3ffa64fdec23db2b417b58615513fd60ad44 SHA512 964bfd70d98a80e6afd7f28fc6bf7359bbde105e77903211cec04c5adcdce273f1d7142a6d206d644300a1185cba1352bf584499d864809dadad69b2023e50d0
EBUILD dssp-3.0.11.ebuild 875 BLAKE2B 6344416239b93804755b1829dcfcb9e8e461606c217938945bb2fc75e9680f2849b39bdbf0ed361592e703fea493a2dacabca498b26e696c969735a585e5d183 SHA512 353f4f5d7b1b195753c738ecc9fb17b429cdeada757806f5cf9a3da65c6318e3885d2c92fa904d5b3a546756eb87ec90787d158e8a9450b4730dd97b45af970d
-EBUILD dssp-4.4.10.ebuild 1329 BLAKE2B 61d8909411ff687ba6b11449b0c3acd307c28ac5901fe360886b980d49b88e301cbd539d794503e789e73973ce1ae6aa965e1846cf7453d41df96285a1710cdf SHA512 d3beb704dc3a3783c79ac73fdfdebf74e82fa15d8d7d792124a529c7a208e6349b8035585d0ee96eecaf13ef81ecaa407c2ee22edd8bfdbe5befc945ca5453a6
+EBUILD dssp-4.4.10.ebuild 1328 BLAKE2B 4e01021b9817c33434a3316aae5f44311735b243a0bea273b5b983629a3668f6a23ff7dfb5cf38b6128b925cac8236ba9d1df68fb5ad0692906b2e9ea2e2015d SHA512 c90c5543a7bea86cb8bc8534608518b8dc262767505d77e0de57c79c8d7d973152cba9985c85ac23c0deda1b1e5b92535274d94d98e79a73c4d2cbfb70edabab
EBUILD dssp-4.4.7.ebuild 1329 BLAKE2B 61d8909411ff687ba6b11449b0c3acd307c28ac5901fe360886b980d49b88e301cbd539d794503e789e73973ce1ae6aa965e1846cf7453d41df96285a1710cdf SHA512 d3beb704dc3a3783c79ac73fdfdebf74e82fa15d8d7d792124a529c7a208e6349b8035585d0ee96eecaf13ef81ecaa407c2ee22edd8bfdbe5befc945ca5453a6
EBUILD dssp-4.4.8.ebuild 1329 BLAKE2B 61d8909411ff687ba6b11449b0c3acd307c28ac5901fe360886b980d49b88e301cbd539d794503e789e73973ce1ae6aa965e1846cf7453d41df96285a1710cdf SHA512 d3beb704dc3a3783c79ac73fdfdebf74e82fa15d8d7d792124a529c7a208e6349b8035585d0ee96eecaf13ef81ecaa407c2ee22edd8bfdbe5befc945ca5453a6
MISC metadata.xml 295 BLAKE2B 4355bbe00822cc702acdf70031ab9cd1f2a8f6e076d71016c1783f2a6c052c2da0a1a4a1860062562bb837161787f2481fa6f49c4319c546482a263ebe149bb0 SHA512 ace35ca21c614a7c0cbdea2496be3190a907295053566707c1875836a306cc9e9c96816cca6ce2b514935f6fcd494d2e813f4d94ba88552cd7b86831f30501f4
diff --git a/sci-chemistry/dssp/dssp-4.4.10.ebuild b/sci-chemistry/dssp/dssp-4.4.10.ebuild
index d5e51fe40fec..52cf9b1a6a0f 100644
--- a/sci-chemistry/dssp/dssp-4.4.10.ebuild
+++ b/sci-chemistry/dssp/dssp-4.4.10.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2024 Gentoo Authors
+# Copyright 1999-2025 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -10,7 +10,7 @@ SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${
LICENSE="BSD-2"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 ~x86"
# doc disabled as it only generates a PDF from the manpage for now
# https://github.com/PDB-REDO/dssp/issues/64
#IUSE="doc"
diff --git a/sci-chemistry/gnome-chemistry-utils/Manifest b/sci-chemistry/gnome-chemistry-utils/Manifest
index 1c4c1feed099..688b32a6b985 100644
--- a/sci-chemistry/gnome-chemistry-utils/Manifest
+++ b/sci-chemistry/gnome-chemistry-utils/Manifest
@@ -1,4 +1,5 @@
+AUX gnome-chemistry-utils-fix_pointer_types.patch 1295 BLAKE2B 8e63f293480a5ccef0331850b2a1c69c608dcd50518fd9bca3fd84226a50ff92c1a20fbe547b1490c2959983ec908ebe1579b7ed3455ef62c89115a61db9769f SHA512 ebf12fffa69eaa5278c2fb65e87ce8314b5fa3e7dfeeb86185e02f08fe588c510da8ec71efbb020df3c11adf83f70143d2a01fafa1e04fc30494cd90f673904e
DIST gnome-chemistry-utils-0.14.17.tar.xz 5911248 BLAKE2B 5d3bb4afbe3d3f620912e810717f08674d56a11c384b1fb239788cfbbb625797e8c52de2b6d940ae7f3d83847533afedd6ed961b1fa0ea1cec62dda88de1a6df SHA512 01bb964e1484e028c5965f1de74798422b448823047fcadf668dc76e98b3e214939a2f031d0182c717c4376f490e5969a4604ee66d1763e6b480032d7ae97468
DIST gnome-chemistry-utils_0.14.17-6.debian.tar.xz 68528 BLAKE2B 2e4d318a5b91ca7963829c40c5d732a0ffa7fd9f4a32a6727f4926d2d4ec57989f50bd6839da49b4fa71dc533830bd0926205e952f08d04c08320e76ab51914c SHA512 8c6fad95c5d5e0895666fb9fb880364a9e3ab89761893b812c2cf835265acb40abe6b40def0960e1b38a0eea441310a3c1af608a2bcea37d5558533c9151e309
-EBUILD gnome-chemistry-utils-0.14.17_p6-r2.ebuild 1691 BLAKE2B ff8933db92a10d4eac0cbf4b781156e4ce6bed7c4fca7e67dc01b4ca47b5279ef49eba75ce4e01c42148c40dd3596b07df0fffd4fa347ed2522ae39019d75e85 SHA512 69b7c9890769ea5a93becd166bc10b3c4fd21b14bef2c2a7e06a1191447529e5851dbb60ade7d8d9f60365ce91c33c11b7c36b9f692b69a70ef1cf60902ba511
+EBUILD gnome-chemistry-utils-0.14.17_p6-r2.ebuild 1758 BLAKE2B b96f8cf3e2958df3f72332753befacc68f1a5e73124c3d885329d0732be0f095d27d6f01afbec3afcbb374bba0d305d00199ade1b18ac3e9b6c99ae1e4c0d245 SHA512 e6e417fdc870a33c27c0c4dcff14d3c671aa6ca27bf16d237367003ffeae0499a59a6cdb77e50a62c7a0350a2ebdae5f0e9aadaa8e0a50c9045581465da9af60
MISC metadata.xml 337 BLAKE2B f6895ff4b84e03d81d69b69efe05fc3bf246153e09afa56323c853c7b9b8e775d25173d24c82e2f2e66f5db42430c433e82940d91d47a99b51679af13b0d17ae SHA512 8a22e6a36ad43faeb635a12d977eed127f30f977915bfed2379b2187d33e05f2bbbc937977e168b47af5adb3fe26f964439d5d16e7a44dcd7f12faf7b84e60b1
diff --git a/sci-chemistry/gnome-chemistry-utils/files/gnome-chemistry-utils-fix_pointer_types.patch b/sci-chemistry/gnome-chemistry-utils/files/gnome-chemistry-utils-fix_pointer_types.patch
new file mode 100644
index 000000000000..256a008b9f7d
--- /dev/null
+++ b/sci-chemistry/gnome-chemistry-utils/files/gnome-chemistry-utils-fix_pointer_types.patch
@@ -0,0 +1,30 @@
+diff -Naur gnome-chemistry-utils-0.14.17_orig/libs/gccv/text.cc gnome-chemistry-utils-0.14.17_mod/libs/gccv/text.cc
+--- gnome-chemistry-utils-0.14.17_orig/libs/gccv/text.cc 2017-02-12 10:10:09.000000000 +0100
++++ gnome-chemistry-utils-0.14.17_mod/libs/gccv/text.cc 2024-09-02 22:58:57.724923903 +0200
+@@ -1126,7 +1126,7 @@
+ if (event->state & GDK_CONTROL_MASK) {
+ /* move to end of word */
+ char const* s = m_Text.c_str ();
+- char *p = g_utf8_next_char (s + m_CurPos);
++ char const* p = g_utf8_next_char (s + m_CurPos);
+ while (*p && (!g_unichar_isgraph (g_utf8_get_char(p)) || g_unichar_ispunct (g_utf8_get_char(p))))
+ p = g_utf8_next_char (p);
+ while (g_unichar_isgraph (g_utf8_get_char(p)) && !g_unichar_ispunct (g_utf8_get_char(p)))
+@@ -1137,7 +1137,7 @@
+ Invalidate ();
+ } else {
+ char const* s = m_Text.c_str ();
+- char *p = g_utf8_next_char (s + m_CurPos);
++ char const* p = g_utf8_next_char (s + m_CurPos);
+ if (!p)
+ break;
+ m_CurPos = p - s;
+@@ -1224,7 +1224,7 @@
+ if (m_CurPos == m_Text.length ())
+ break;
+ char const* s = m_Text.c_str ();
+- char *p = g_utf8_next_char (s + m_CurPos);
++ char const* p = g_utf8_next_char (s + m_CurPos);
+ int new_pos = p - s;
+ ReplaceText (empty_st, m_CurPos, new_pos - m_CurPos);
+ if (client)
diff --git a/sci-chemistry/gnome-chemistry-utils/gnome-chemistry-utils-0.14.17_p6-r2.ebuild b/sci-chemistry/gnome-chemistry-utils/gnome-chemistry-utils-0.14.17_p6-r2.ebuild
index 33d0e163eb2a..591709b1fa59 100644
--- a/sci-chemistry/gnome-chemistry-utils/gnome-chemistry-utils-0.14.17_p6-r2.ebuild
+++ b/sci-chemistry/gnome-chemistry-utils/gnome-chemistry-utils-0.14.17_p6-r2.ebuild
@@ -10,10 +10,11 @@ SRC_URI="
http://download.savannah.gnu.org/releases/gchemutils/$(ver_cut 1-2)/${P/_p*}.tar.xz
mirror://debian/pool/main/${PN:0:1}/${PN}/${PN}_${PV/_p*}-${PV/*_p}.debian.tar.xz
"
+S="${WORKDIR}/${P/_p*}"
+LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-LICENSE="GPL-3"
IUSE="gnumeric"
RDEPEND="
@@ -38,8 +39,6 @@ BDEPEND="
virtual/pkgconfig
"
-S="${WORKDIR}/${P/_p*}"
-
src_prepare() {
default
@@ -52,6 +51,9 @@ src_prepare() {
eapply -p1 "${WORKDIR}/debian/patches/${p}"
done
+ # From Fedora
+ eapply "${FILESDIR}"/${PN}-fix_pointer_types.patch
+
eautoreconf
}
diff --git a/sci-chemistry/vmd/Manifest b/sci-chemistry/vmd/Manifest
index 1135f253ff10..11f25cc2ac7d 100644
--- a/sci-chemistry/vmd/Manifest
+++ b/sci-chemistry/vmd/Manifest
@@ -1,5 +1,5 @@
DIST vmd-1.9.4_alpha57-gentoo-patches.tar.xz 14612 BLAKE2B e50a2fc734038207174dd5cc525f01824ce324a65b8ce604f83862ce50be6b1950d199188a717e2368b2b050256a4705662009e3530d621b19c52bb109b6a844 SHA512 6283076e47dfcd780bbc94f9ca2b044a028a472c09d78616d373813d81ec764bf1697e56a8f487f9f0999cf409c0f141bf248156f60851073347d1b640a6953c
DIST vmd-1.9.4a57.src.tar.gz 43155120 BLAKE2B de0da96f6681c24e7b1d38890f109088187198cbdddb3d86d783322e837b7a71224085699f3addf2833cf293ab2689f06ab47df284b8fbe080162740094ae844 SHA512 0a3726d8fa279ac62c368cd18724cd09535618454ff6e299d147291ef5d4198ad9d58a94f0b05699ec8a23128753c55e7397c95a5ce194e36d3fabef1bcf454c
-EBUILD vmd-1.9.4_alpha57-r1.ebuild 7407 BLAKE2B a2dd25449e23acbb09181e939b27c0bd5fd81344ffb1d64f49dc26a1bc89a8e550418c27bf436d291bb91cda4f1ce3d0b520ac43e5eba065ddc3ae54154f77db SHA512 480b04d19e75c51f6ecc77e2decca4b9e645985f5d4f2f7ee5f441a6c8530658e5c8d588fd3f77457c9cce8e4b43203281eb295cb985a926907a62459cb25557
-EBUILD vmd-1.9.4_alpha57.ebuild 7516 BLAKE2B 3694b45e09af9f1ca33854543a902230bef3b72f1c2b0cf0f0e446b0e1276720e84da17eee0c0bb70eb4321c7602bdb7e2490e619a260f616d9d664c53ac4127 SHA512 80d1c81faca51066b5a4c3e6f3bf437b3ac3e5c01c0b4d156d6bac219f4dc90e1652ef77032539cfff73e62b9e19a381ec30a8a77a0de32d724c32faf39730bf
+EBUILD vmd-1.9.4_alpha57-r2.ebuild 7505 BLAKE2B 5c1d9dfa81a3201181049a89ba5c0f948bbb9e792a919a20ccc2811c28b9706524404625372c3742ebeef799b69784324cf7e6255ce80295bfca6f5925c9853a SHA512 17f987b251a18705d735d53ac0b608f50471bcac31bd7b4cf1ff6933762c083f8adf070d82f369cdd472d45496c41759b29ca31f438a825e0c04b4dcafc37f0b
+EBUILD vmd-1.9.4_alpha57-r3.ebuild 7396 BLAKE2B 98dc5ec7b07e0707e59d890bb132dbdeeac84217bce9d7f930084b14abd6fda791eadd8f308d6756df30ce5cac48c5d88233fd5258a1db8934bc8c2904d6f39b SHA512 12a02d51473572fc9a5d56b0d6dcd5201e5d4b701259a72eead0d277001edfdb32ff07e2f1c2167c6551e491222a981df6db9bb63618bd632692a6541a5ff62b
MISC metadata.xml 697 BLAKE2B fe7fd00b1802dba4e503212cf8e0a91723dd6d255e346bca099bb2eb8cdb6291b27d1cbe9229e652c6f113e93cc3285bbf346977647d186f5403bd153a2c6d17 SHA512 f1bacf679ce42835e525265af48429d58d65a9aedc268e699cba731a1ea0bbe481777c726c2e1fd6a0ad7465c0e666f8f58145619d985cd0675eb1aff6b15472
diff --git a/sci-chemistry/vmd/vmd-1.9.4_alpha57.ebuild b/sci-chemistry/vmd/vmd-1.9.4_alpha57-r2.ebuild
index e0628f111574..9addf38da980 100644
--- a/sci-chemistry/vmd/vmd-1.9.4_alpha57.ebuild
+++ b/sci-chemistry/vmd/vmd-1.9.4_alpha57-r2.ebuild
@@ -35,7 +35,7 @@ CDEPEND="${PYTHON_DEPS}
dev-libs/expat
sci-libs/netcdf:0=
virtual/opengl
- >=x11-libs/fltk-1.1.10-r2:1
+ x11-libs/fltk:1=
x11-libs/libXft
x11-libs/libXi
cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= )
diff --git a/sci-chemistry/vmd/vmd-1.9.4_alpha57-r1.ebuild b/sci-chemistry/vmd/vmd-1.9.4_alpha57-r3.ebuild
index 18bdb88a4c0c..cc5a157bf69a 100644
--- a/sci-chemistry/vmd/vmd-1.9.4_alpha57-r1.ebuild
+++ b/sci-chemistry/vmd/vmd-1.9.4_alpha57-r3.ebuild
@@ -35,7 +35,7 @@ CDEPEND="${PYTHON_DEPS}
dev-libs/expat
sci-libs/netcdf:0=
virtual/opengl
- >=x11-libs/fltk-1.1.10-r2:1
+ x11-libs/fltk:1=
x11-libs/libXft
x11-libs/libXi
cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= )
generated by cgit v1.2.3 (git 2.25.1) at 2025-01-25 22:00:54 +0000