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-rw-r--r--sci-chemistry/viewmol/Manifest5
-rw-r--r--sci-chemistry/viewmol/files/2.4.1-change-default-paths.patch68
-rw-r--r--sci-chemistry/viewmol/files/2.4.1-remove-icc-check.patch22
-rw-r--r--sci-chemistry/viewmol/metadata.xml11
-rw-r--r--sci-chemistry/viewmol/viewmol-2.4.1-r3.ebuild89
5 files changed, 0 insertions, 195 deletions
diff --git a/sci-chemistry/viewmol/Manifest b/sci-chemistry/viewmol/Manifest
deleted file mode 100644
index 7de430c5ed44..000000000000
--- a/sci-chemistry/viewmol/Manifest
+++ /dev/null
@@ -1,5 +0,0 @@
-AUX 2.4.1-change-default-paths.patch 2745 BLAKE2B c604ab1ffbe992b49671f0f1c713ce95fa2cec18b39d625856bdf8cbc226f8965f3fc13b22003a8ec812954daf2533cac4a001255e07a5cd3bf0eeaeed6524dd SHA512 9dda6e39f43706f9868eb02402137573d58e90b14940ad5d10ede6088e49d2ebd8a114ffda3cf4a69bee5874cc0a16b83bb4ea86281203765c5d861cb8dac6dd
-AUX 2.4.1-remove-icc-check.patch 1020 BLAKE2B 63c0b2c68be4bc745f8dbc184f1ca90bc0b5e2964508e686c811cb1a3f46d5ed8f401f789fce8e8f15b89e1ccaf7a657a2de830c2e829d6782f285031a89ee3c SHA512 ea2a1a58730561fcf2bc05a0f23dc2108cf2fd97d228a7a6305d3323abda5ce3510793dbebf2253cef9e6d60326889079bc6a9639228b1b2bfd9d9a3b8c03ebb
-DIST viewmol-2.4.1.src.tgz 2229379 BLAKE2B c7d3d9f0a0a728f13be718e2b85a645d1824d2c9efd920a05a0693dfb5904e18da20fcef8080e99f497280effdb71cb21c58d9aeadf49d2477e1c931caa49389 SHA512 42701d570d97e77b84597950a9068dfdf48faf4e551957383c8eea38f082c1ad136c17b7cbd3903673478506116d6fc08d1288842e74d6a9776526c685083584
-EBUILD viewmol-2.4.1-r3.ebuild 2225 BLAKE2B 74563226fe1bcbe418bde909f202eead15aedf7610a592f8d6d7ae1b2e0d47cf2bdec2a91e21772f978512ddbe0cc0739028694f85a2fa13adcaa9fe9e79a6c6 SHA512 b290d08a50662422876d093b973ba7b4e44fe759258325d1f796beb8f929575861a0b8367d52b1ab8a5976dea8e5b805894454867f32751fbd768bd6c9a3476c
-MISC metadata.xml 342 BLAKE2B 3d43fda7cef989246f20968757c7c9710832915b5aa7623026185e69f79901fdeed5503c04a87d7395bcc0f9fd47313a017673903df74cc7a55999fb5c24467a SHA512 f77c63597bc5df26ba6dd136ee943f78562c5d99fefc1b435633c602a6eb3433600976884085ea8aa8f87f2f79fd495e9b51f918290bc1751e66d7515fe4e039
diff --git a/sci-chemistry/viewmol/files/2.4.1-change-default-paths.patch b/sci-chemistry/viewmol/files/2.4.1-change-default-paths.patch
deleted file mode 100644
index 4b1edef7ef8b..000000000000
--- a/sci-chemistry/viewmol/files/2.4.1-change-default-paths.patch
+++ /dev/null
@@ -1,68 +0,0 @@
-diff --git a/source/getrc.c b/source/getrc.c
-index a39b436..c130096 100644
---- a/getrc.c
-+++ b/getrc.c
-@@ -87,7 +87,7 @@ extern XtAppContext app;
-
- static char viewmolpath[MAXLENLINE];
-
--#define DEFAULTPATH "/usr/local/lib/viewmol"
-+#define DEFAULTPATH "@GENTOO_PORTAGE_EPREFIX@/usr/GENTOOLIBDIR/viewmol"
-
- int getrc(void)
- {
-diff --git a/source/install b/source/install
-index 580865b..f136af3 100755
---- a/install
-+++ b/install
-@@ -54,24 +54,27 @@ fi
- cp $dirorig/viewmol $ROOT/bin
- chmod 711 $ROOT/bin/viewmol
-
--# install other files needed in $ROOT/lib/viewmol
--if [ ! -d $ROOT/lib/viewmol/$dir ]
-+# install other files needed in $ROOT/GENTOOLIBDIR/viewmol
-+if [ ! -d $ROOT/GENTOOLIBDIR/viewmol/$dir ]
- then
-- mkdir -p $ROOT/lib/viewmol/$dir
-- chmod 755 $ROOT/lib/viewmol/$dir
-+ mkdir -p $ROOT/GENTOOLIBDIR/viewmol/$dir
-+ chmod 755 $ROOT/GENTOOLIBDIR/viewmol/$dir
- fi
- cd $dirorig
--cp tm bio readgamess readgauss readmopac readpdb $ROOT/lib/viewmol/$dir
--chmod 711 $ROOT/lib/viewmol/$dir/*
-+cp tm bio readgamess readgauss readmopac readpdb $ROOT/GENTOOLIBDIR/viewmol/$dir
-+chmod 711 $ROOT/GENTOOLIBDIR/viewmol/$dir/*
- cd ../..
--cp readdmol readdmol.awk readgulp readpqs writecar writegauss.py writemol writetm $ROOT/lib/viewmol
--chmod 755 $ROOT/lib/viewmol/*
--cp -r doc examples locale scripts tests $ROOT/lib/viewmol
--find $ROOT/lib/viewmol -type f -exec chmod a+r {} \;
--find $ROOT/lib/viewmol -type d -exec chmod a+rx {} \;
--sed 's/\/source//g' viewmolrc > $ROOT/lib/viewmol/viewmolrc
--chmod -R 644 $ROOT/lib/viewmol/viewmolrc
--if [ -d /usr/X11R6/lib/X11/app-defaults ]
-+cp readdmol readdmol.awk readgulp readpqs writecar writegauss.py writemol writetm $ROOT/GENTOOLIBDIR/viewmol
-+chmod 755 $ROOT/GENTOOLIBDIR/viewmol/*
-+mkdir -p $ROOT/usr/share/viewmol $ROOT/usr/share/doc/GENTOODOCDIR/ $ROOT/GENTOOLIBDIR/viewmol/
-+cp -r examples scripts tests $ROOT/usr/share/viewmol
-+cp -r locale $ROOT/GENTOOLIBDIR/viewmol/
-+cp -r doc/* examples scripts tests $ROOT/usr/share/doc/GENTOODOCDIR/
-+find $ROOT/GENTOOLIBDIR/viewmol -type f -exec chmod a+r {} \;
-+find $ROOT/GENTOOLIBDIR/viewmol -type d -exec chmod a+rx {} \;
-+sed 's/\/source//g' viewmolrc > $ROOT/GENTOOLIBDIR/viewmol/viewmolrc
-+chmod -R 644 $ROOT/GENTOOLIBDIR/viewmol/viewmolrc
-+if [ -d $ROOT/X11R6/GENTOOLIBDIR/X11/app-defaults ]
- then
- locale=`echo $LANG | cut -c1-2`
- if [ "$locale" = "en" ]
-@@ -82,6 +85,6 @@ then
- # The C locale is defined by default for rpm builds, overwrite it
- locale="en_US"
- fi
-- cp locale/${locale}/Viewmol /usr/X11R6/lib/X11/app-defaults
-- chmod a+r /usr/X11R6/lib/X11/app-defaults/Viewmol
-+ cp locale/${locale}/Viewmol ${ROOT}/X11R6/GENTOOLIBDIR/X11/app-defaults
-+ chmod a+r ${ROOT}/X11R6/GENTOOLIBDIR/X11/app-defaults/Viewmol
- fi
diff --git a/sci-chemistry/viewmol/files/2.4.1-remove-icc-check.patch b/sci-chemistry/viewmol/files/2.4.1-remove-icc-check.patch
deleted file mode 100644
index fd91e0a5a434..000000000000
--- a/sci-chemistry/viewmol/files/2.4.1-remove-icc-check.patch
+++ /dev/null
@@ -1,22 +0,0 @@
---- a/getmachine
-+++ b/getmachine
-@@ -269,19 +269,11 @@
- makedir
- cat ../.config.$os > makefile
- use_icc=`type icc 2> /dev/null`
-- if [ "$use_icc" = "" ]
-- then
- findProcessor
- echo 'COMPILER=gcc' >> makefile
- echo "OPT=-O6 -mcpu=$processor -fomit-frame-pointer -ffast-math -malign-double" >> makefile
- echo 'CFLAGS=-Wall -I/usr/X11R6/include -DLINUX -Wno-strict-aliasing' >> makefile
- echo "LDFLAGS=$LINKFORSHARED" >> makefile
-- else
-- echo 'COMPILER=icc' >> makefile
-- echo 'OPT=-O2 -ipo' >> makefile
-- echo 'CFLAGS=-I/opt/intel/compiler50/ia32/include -I/usr/X11R6/include -DLINUX' >> makefile
-- echo "LDFLAGS=$LINKFORSHARED -ipo" >> makefile
-- fi
- echo 'SCANDIR=' >> makefile
- echo 'INCLUDE=$(TIFFINCLUDE) -I$(PNGINCLUDE) -I$(PYTHONINCLUDE)' >> makefile
- echo 'LIBRARY=$(LIBTIFF) $(LIBPNG) -L$(LIBPYTHON)' >> makefile
diff --git a/sci-chemistry/viewmol/metadata.xml b/sci-chemistry/viewmol/metadata.xml
deleted file mode 100644
index 335c7edd503b..000000000000
--- a/sci-chemistry/viewmol/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">viewmol</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-chemistry/viewmol/viewmol-2.4.1-r3.ebuild b/sci-chemistry/viewmol/viewmol-2.4.1-r3.ebuild
deleted file mode 100644
index a82367bac3b7..000000000000
--- a/sci-chemistry/viewmol/viewmol-2.4.1-r3.ebuild
+++ /dev/null
@@ -1,89 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-PYTHON_REQ_USE="tk(-)"
-
-inherit prefix python-single-r1 toolchain-funcs
-
-DESCRIPTION="Open-source graphical front end for computational chemistry programs"
-HOMEPAGE="http://viewmol.sourceforge.net/"
-SRC_URI="mirror://sourceforge/viewmol/${P}.src.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- media-libs/libpng:0=
- media-libs/tiff:0
- virtual/glu
- virtual/opengl
- x11-libs/libX11
- x11-libs/libXi
- x11-libs/libXmu
- x11-libs/libXt
- x11-libs/motif:0
- ${PYTHON_DEPS}"
-DEPEND="${RDEPEND}
- x11-base/xorg-proto"
-
-S="${WORKDIR}/${P}/source"
-
-PATCHES=(
- "${FILESDIR}"/${PV}-remove-icc-check.patch
- "${FILESDIR}"/${PV}-change-default-paths.patch
-)
-
-src_prepare() {
- default
-
- eprefixify getrc.c
- sed "s:GENTOOLIBDIR:$(get_libdir):g" -i install getrc.c || die
- sed "s:GENTOODOCDIR:${PF}:g" -i install || die
-
- mkdir "$(uname -s)" || die
- cd "$(uname -s)" || die
-
- cat >> ".config.$(uname -s)" <<- EOF || die
- LIBTIFF = -L"${EPREFIX}/usr/$(get_libdir)"
- TIFFINCLUDE = "${EPREFIX}/usr/include"
-
- LIBPNG = -L"${EPREFIX}/usr/$(get_libdir)"
- PNGINCLUDE = "${EPREFIX}/usr/include"
-
- PYTHONVERSION = ${EPYTHON}
- PYTHONINCLUDE = $(python_get_CFLAGS)
- PYTHONLIB = $(python_get_LIBS)
-
- COMPILER = $(tc-getCC)
- CFLAGS = ${CFLAGS} -DLINUX
- LDFLAGS = ${LDFLAGS}
- SCANDIR=
- INCLUDE=\$(TIFFINCLUDE) -I\$(PNGINCLUDE) \$(PYTHONINCLUDE)
- LIBRARY=\$(LIBTIFF) \$(LIBPNG) \$(PYTHONLIB)
- LIBS=-L"${EPREFIX}/usr/$(get_libdir)" -ltiff -lpng -lz -lGLU -lGL -L"${EPREFIX}/usr/X11R6/lib" -lXm -lXmu -lXp -lXi -lXext -lXt -lX11 -lpthread -lutil -ldl -lm
- EOF
-
- cp .config.$(uname -s) makefile || die
- cat ../Makefile >> makefile || die
-}
-
-src_compile() {
- emake -C "$(uname -s)" viewmol_ tm_ bio_ readgamess_ readgauss_ readmopac_ readpdb_
- "${EPREFIX}"/bin/bash makeTranslations || die
-}
-
-src_install() {
- ./install "${ED%/}"/usr || die
-
- # fix broken layout
- mv "${ED%/}"/usr/{usr/share,} || die
- rm -rf "${ED%/}"/usr/usr || die
- mv "${ED%/}"/usr/{$(get_libdir)/${PN}/locale,share} || die
- mv "${ED%/}"/usr/{$(get_libdir),libexec} || die
-}
generated by cgit v1.2.3 (git 2.25.1) at 2024-07-01 08:01:59 +0000