5 files changed, 94 insertions, 0 deletions
diff --git a/sci-chemistry/probe/Manifest b/sci-chemistry/probe/Manifest
new file mode 100644
index 000000000000..bbbe5ae5a1ed
--- /dev/null
+++ b/sci-chemistry/probe/Manifest
@@ -0,0 +1,7 @@
+AUX as-needed.patch 594 SHA256 1f46ff455ac4167fe56051fa2fb8859ee5c504429b70abb787ccf8a480fb7065 SHA512 6478862bc967614e8fc57abaa03b92f62943508ae77710b179bb71ae96d21c289b4f2836d76236297ba66ed97954997f4e6c8874f369af03200bf13e5226f8c9 WHIRLPOOL 74f203b062ac5ee744f0f0798644b5b82d72c2e7427c418b6889d3d9f1ed06b1b03030883d0a60df81d218dd4f26e7f993ce4572aeee562c9feb30721abdb326
+AUX probe-2.13.110909-as-needed.patch 634 SHA256 d40ce6144d7e5bd075ae2aace729fce2f44d3412d063300cb50e8428f00faf7f SHA512 24b291cffbc00588626ac9da3e38e9bbb9a9ba121a3ae74fa5e91c94cd30489d61a559351d5a4b89ebb4c1564be30144d1eec295032ed612fa6e80d47d9ba8a6 WHIRLPOOL 2b13f34271064911755e3d13276856d3fe016d6a53c8dd5aac516c7b1afc44abcd0062ee89e086ae4734f201b6c86c43e0b893e599b6aafa0d674a2a6b34dba1
+DIST probe.2.13.110909.src.zip 131063 SHA256 df14b76d27a7c43b2b57c315d0ad71cdf6acc7943c43195a797162be7816fa71 SHA512 5efa066873d0e139da66bf8edb541fe42df94e99cab171ad8d06a8a6f5caada982ef5b18481e748b224dbed86f63c99237d04ecd107c82855b44de91fb6d2b16 WHIRLPOOL 12f6fefe1b03b71268f39fa3aa7ad796230c76c2e029b8dc86955abd43c8e3f09f7591f84cd79c7ba11037d5b323c922ddf36abf6911d556981f5cc21378912f
+EBUILD probe-2.13.110909.ebuild 705 SHA256 bb5b52f7ebf6801681e87c2257b1e69a5c8eb25538126cada8ae67e97b198596 SHA512 525ecf8ed9db9b5c99f618c3186bd54f1b99d3c97f6c05c48d51a8a8e672b41d548c62d9468f05c95794bb71fbd9f49f24e9c21686dc48414211600b1f5256ce WHIRLPOOL 23839f2b8217096f389802b97122d7e805f0d5358db10e91b3823190b0345c1be2c95a3b94fea9d0258f291940f85510a64f12f156ddcfd59a74273c1059cf27
+MISC ChangeLog 3256 SHA256 5be84b575f19f3369e083148359921347046f9f921254a573dde57321d49ccc4 SHA512 1962c22bbe3a4e18e3169ea0463c7c922ff58041fedc6dc89ad94d164ab05cb94fdf72f5ffbec4e4f26af5f94b948d76901593014c34e4ea3c0258b901e84e69 WHIRLPOOL 65f58ebf51e0cee8db8382e227497aed4482e59f55d3340c2062f6524c713f1cd3b890a0def43bdd5a504d7adc15699717389be0220f971aca21410777d8d8c7
+MISC ChangeLog-2015 2976 SHA256 d27e5a84397bd92cafd131c60e40019019bdac705c081caaf7c6ce7676ab485d SHA512 7e75fe8f16d170f6c4587a4b4bedc42b88c752c7f88db02bdecddc7c27842af3987dac88e0bffeab59a8edc0d533178de207910f74d476a84dedba8cfa04c24f WHIRLPOOL 7bb1b0ec9f90b79c923f65b3c4befdd61f82124b689bf965e3e219378c17a431e299ed7b2ccd65717a55032bc47ca908cdde8a1a63c1b0f5a5603a20ca3cb3f7
+MISC metadata.xml 265 SHA256 88fc04c2e3102afd870cfa235e90f0a80b4ebbb032780d7501ff6c6b654c96a2 SHA512 470f6c178e88c4e83afa46d5e901a45fc2427a779ae832df7fa2d6e25e9e8b4ce77cd3a8fe191e6242d6df3b673f0de6b4f90f1e147aa8b8dd566f18163cc73a WHIRLPOOL ba08ab5455155b3c0c24ed2ec94129b3538b4be93069560166150ee59c57bb197c7b513c5a934e47c138aaf9bd34a4a3a8b63c815e34e2a5435af8056a09961d
diff --git a/sci-chemistry/probe/files/as-needed.patch b/sci-chemistry/probe/files/as-needed.patch
new file mode 100644
index 000000000000..9ddecf5f569e
--- /dev/null
+++ b/sci-chemistry/probe/files/as-needed.patch
@@ -0,0 +1,21 @@
+diff --git a/Makefile b/Makefile
+index 68d7469..bcb821c 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,6 +1,6 @@
+ MACHINEFLAGS = 
+ CFLAGS = $(MACHINEFLAGS)
+-LFLAGS = -lm $(MACHINEFLAGS)
++LFLAGS = -lm
+ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+ 	 parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o
+ 
+@@ -8,7 +8,7 @@ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+ 	cc -c $*.c $(CFLAGS)
+ 
+ probe: probe.o $(OBJLIST)
+-	cc -o $@ probe.o $(OBJLIST) $(LFLAGS)
++	cc $(MACHINEFLAGS) -o $@ probe.o $(OBJLIST) $(LFLAGS)
+ 
+ clean:
+ 	@rm -f *.o *.ckp
diff --git a/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch b/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch
new file mode 100644
index 000000000000..df7040c3ba1d
--- /dev/null
+++ b/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch
@@ -0,0 +1,25 @@
+ Makefile |    8 +++-----
+ 1 files changed, 3 insertions(+), 5 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 9031bd0..8f74d6a 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,14 +1,12 @@
+-MACHINEFLAGS = 
+-CFLAGS = $(MACHINEFLAGS)
+-LFLAGS = -static -lm $(MACHINEFLAGS)
++LIBS = -lm
+ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+ 	 parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o
+ 
+ .c.o:
+-	cc -c $*.c $(CFLAGS)
++	$(CC) $(CFLAGS) -c $*.c
+ 
+ probe: probe.o $(OBJLIST)
+-	cc -o $@ probe.o $(OBJLIST) $(LFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ probe.o $(OBJLIST) $(LIBS)
+ 
+ clean:
+ 	@rm -f *.o *.ckp
diff --git a/sci-chemistry/probe/metadata.xml b/sci-chemistry/probe/metadata.xml
new file mode 100644
index 000000000000..da36ecbfcd6a
--- /dev/null
+++ b/sci-chemistry/probe/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-chemistry@gentoo.org</email>
+		<name>Gentoo Chemistry Project</name>
+	</maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/probe/probe-2.13.110909.ebuild b/sci-chemistry/probe/probe-2.13.110909.ebuild
new file mode 100644
index 000000000000..66b1ac8c56da
--- /dev/null
+++ b/sci-chemistry/probe/probe-2.13.110909.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=4
+
+inherit eutils toolchain-funcs
+
+MY_P="${PN}.${PV}"
+
+DESCRIPTION="Evaluates atomic packing within or between molecules"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/probe.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/probe/${MY_P}.src.zip"
+
+SLOT="0"
+LICENSE="richardson"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+IUSE=""
+
+RDEPEND=""
+DEPEND="${RDEPEND}
+	app-arch/unzip"
+
+S="${WORKDIR}"/${MY_P}.src
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-as-needed.patch
+	tc-export CC
+}
+
+src_install() {
+	dobin "${S}"/probe
+	dodoc "${S}"/README*
+}