4 files changed, 0 insertions, 86 deletions
diff --git a/sci-chemistry/pdb2pqr/files/pdb2pka b/sci-chemistry/pdb2pqr/files/pdb2pka
deleted file mode 100644
index 2406b0c4773f..000000000000
--- a/sci-chemistry/pdb2pqr/files/pdb2pka
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/usr/bin/env python
-
-import subprocess
-import site
-import sys
-import os
-
-sitepackages = site.getsitepackages()[0]
-
-_cmd=[os.path.join(sitepackages, "pdb2pqr", "pdb2pka", "pka.py")]
-_cmd.extend(sys.argv[1:])
-
-subprocess.call(_cmd, stdout=sys.stdout, stderr=sys.stderr)
diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr b/sci-chemistry/pdb2pqr/files/pdb2pqr
deleted file mode 100644
index 8c0635aea94e..000000000000
--- a/sci-chemistry/pdb2pqr/files/pdb2pqr
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/usr/bin/env python
-
-import subprocess
-import site
-import sys
-import os
-
-sitepackages = site.getsitepackages()[0]
-
-_cmd=[os.path.join(sitepackages, "pdb2pqr", "pdb2pqr.py")]
-_cmd.extend(sys.argv[1:])
-
-subprocess.call(_cmd, stdout=sys.stdout, stderr=sys.stderr)
diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-flags.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-flags.patch
deleted file mode 100644
index fac32b233e6b..000000000000
--- a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-flags.patch
+++ /dev/null
@@ -1,45 +0,0 @@
- pdb2pka/SConscript           | 9 ++++++++-
- pdb2pka/substruct/SConscript | 6 ++++++
- 2 files changed, 14 insertions(+), 1 deletion(-)
-
-diff --git a/pdb2pka/SConscript b/pdb2pka/SConscript
-index 583cdc5..6c30011 100644
---- a/pdb2pka/SConscript
-+++ b/pdb2pka/SConscript
-@@ -1,4 +1,11 @@
- Import('env')
-+import os
-+
-+env['CCFLAGS'].extend(os.environ['CXXFLAGS'].split())
-+env['LINKFLAGS'].extend(os.environ['LDFLAGS'].split())
-+env['CXX'] = os.environ['CXX']
-+env['LINK'] = os.environ['CXX']
-+
- 
- if env['REBUILD_SWIG']:
-     pyc = env.LoadableModule('_pMC_mult', ['pMC_mult.cpp', 'pMC_mult.i'])
-@@ -9,4 +16,4 @@ Default(pyc)
-     
- algorithms_module = SConscript('substruct/SConscript')
- 
--Return('pyc algorithms_module')
-\ No newline at end of file
-+Return('pyc algorithms_module')
-diff --git a/pdb2pka/substruct/SConscript b/pdb2pka/substruct/SConscript
-index 7dbcdb0..56fb577 100644
---- a/pdb2pka/substruct/SConscript
-+++ b/pdb2pka/substruct/SConscript
-@@ -1,7 +1,13 @@
- import distutils
- import numpy
-+import os
- Import('env')
- 
-+env['CCFLAGS'].extend(os.environ['CXXFLAGS'].split())
-+env['LINKFLAGS'].extend(os.environ['LDFLAGS'].split())
-+env['CXX'] = os.environ['CXX']
-+env['LINK'] = os.environ['CXX']
-+
- env.Append(CPPPATH=[distutils.sysconfig.get_python_inc(), numpy.get_include()])
- 
- algorithms_pyc = env.LoadableModule('Algorithms', ['Algorithms.cpp'])
diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-install-py.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-install-py.patch
deleted file mode 100644
index 2695b013c66a..000000000000
--- a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-install-py.patch
+++ /dev/null
@@ -1,15 +0,0 @@
- SConscript-install.py | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/SConscript-install.py b/SConscript-install.py
-index e2f9f09..1fdf1a8 100644
---- a/SConscript-install.py
-+++ b/SConscript-install.py
-@@ -41,6 +41,7 @@ def installFile(file_name, build_target='install'):
- 		if GetOption("clean"):
- 			env.Default(result)
- 		Alias(build_target, env.Install(env['PREFIX']+dirname(file_name), result))
-+		Alias(build_target, env.Install(env['PREFIX']+dirname(file_name), target))
- 	else:
- 		Alias(build_target, env.Install(env['PREFIX']+dirname(file_name), target))
-