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-rw-r--r--sci-chemistry/azara/files/2.8-prll.patch387
1 files changed, 0 insertions, 387 deletions
diff --git a/sci-chemistry/azara/files/2.8-prll.patch b/sci-chemistry/azara/files/2.8-prll.patch
deleted file mode 100644
index 4720bb659445..000000000000
--- a/sci-chemistry/azara/files/2.8-prll.patch
+++ /dev/null
@@ -1,387 +0,0 @@
-diff --git a/DataRows/makefile b/DataRows/makefile
-index 587e710..4e0a312 100644
---- a/DataRows/makefile
-+++ b/DataRows/makefile
-@@ -28,7 +28,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--DataRows.so: locals globals
-+DataRows.so: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) $(SHARED_FLAGS) -o $@ $(CFLAGS) $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS)
-diff --git a/azara/makefile b/azara/makefile
-index 3ba0cd9..f7b4ce5 100644
---- a/azara/makefile
-+++ b/azara/makefile
-@@ -12,7 +12,7 @@ LOCAL_OBJS = \
- GLOBAL_OBJS = \
- $(GLOBAL_DIR)/help.o
-
--azara: locals globals
-+azara: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/combine/makefile b/combine/makefile
-index a855236..7a83d8f 100644
---- a/combine/makefile
-+++ b/combine/makefile
-@@ -20,7 +20,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--combine: locals globals
-+combine: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/connect/makefile b/connect/makefile
-index d75e7da..d238507 100644
---- a/connect/makefile
-+++ b/connect/makefile
-@@ -23,7 +23,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--connect: locals globals
-+connect: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/contours/makefile b/contours/makefile
-index 5b832b8..49175dd 100644
---- a/contours/makefile
-+++ b/contours/makefile
-@@ -19,7 +19,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--contours: locals globals
-+contours: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/deflate/makefile b/deflate/makefile
-index 4c4e02e..42d5c30 100644
---- a/deflate/makefile
-+++ b/deflate/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--deflate: locals globals
-+deflate: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/extract/makefile b/extract/makefile
-index 3212cb9..fed874b 100644
---- a/extract/makefile
-+++ b/extract/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--extract: locals globals
-+extract: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/global/makefile b/global/makefile
-index 364fa41..5272a31 100644
---- a/global/makefile
-+++ b/global/makefile
-@@ -42,6 +42,31 @@ LINPACK_OBJS = \
- AZARA_OBJS = \
- help.o
-
-+all: \
-+ azara_objects \
-+ decay_objects \
-+ simulate_objects \
-+ viewer_objects \
-+ components_objects \
-+ shuffle_objects \
-+ connect_objects \
-+ slides_objects \
-+ peak_find_objects \
-+ peak_fit_objects \
-+ plot1_objects \
-+ reflate_objects \
-+ deflate_objects \
-+ combine_objects \
-+ unblock_objects \
-+ extract_objects \
-+ project_objects \
-+ contours_objects \
-+ plot2_nog_objects \
-+ plot2_objects \
-+ process_objects \
-+ python_objects \
-+ integrate_objects
-+
- azara_objects: $(AZARA_OBJS)
-
- DECAY_OBJS = \
-diff --git a/help/makefile b/help/makefile
-index 9e99a7c..59a86a3 100644
---- a/help/makefile
-+++ b/help/makefile
-@@ -39,7 +39,7 @@ globals:
-
- .c.o:; $(CC) -c $(CFLAGS) $<
-
--hlp:
-+hlp: txt2hlp
- $(TXT2HLP) azara
- $(TXT2HLP) combine
- $(TXT2HLP) connect
-@@ -78,7 +78,7 @@ hlp:
- $(TXT2HLP) plot1/text
- $(TXT2HLP) DataRows
-
--html:
-+html: txt2html
- $(TXT2HTML) azara
- $(TXT2HTML) combine
- $(TXT2HTML) connect
-diff --git a/makefile b/makefile
-index 9965b07..f4383af 100644
---- a/makefile
-+++ b/makefile
-@@ -14,7 +14,7 @@ all: help nongui DataRows gui
- help: \
- help_program
-
--nongui: \
-+nongui: help \
- process_program \
- plot2_nog_program \
- peak_program \
-@@ -29,63 +29,66 @@ nongui: \
- connect_program \
- azara_program
-
--gui: \
-+gui: help \
- plot2_program \
- plot1_program
-
--DataRows: \
-+DataRows: help \
- DataRows
-
--process_program:
-- cd process; $(MAKE)
-+global:
-+ $(MAKE) -C global
-
--plot2_program:
-- cd plot2; $(MAKE) plot2
-+process_program: global
-+ $(MAKE) -C process
-
--plot2_nog_program:
-- cd plot2; $(MAKE) plot2_nog
-+plot2_program: global
-+ $(MAKE) -C plot2
-
--plot1_program:
-- cd plot1; $(MAKE)
-+plot2_nog_program: global
-+ $(MAKE) -C plot2 plot2_nog
-
--peak_program:
-- cd peak; $(MAKE)
-+plot1_program: global
-+ $(MAKE) -C plot1
-
--extract_program:
-- cd extract; $(MAKE)
-+peak_program: global process_program
-+ $(MAKE) -C peak
-
--project_program:
-- cd project; $(MAKE)
-+extract_program: global
-+ $(MAKE) -C extract
-
--unblock_program:
-- cd unblock; $(MAKE)
-+project_program: global
-+ $(MAKE) -C project
-
--contours_program:
-- cd contours; $(MAKE)
-+unblock_program: global
-+ $(MAKE) -C unblock
-
--combine_program:
-- cd combine; $(MAKE)
-+contours_program: global
-+ $(MAKE) -C contours
-
--deflate_program:
-- cd deflate; $(MAKE)
-+combine_program: global
-+ $(MAKE) -C combine
-
--reflate_program:
-- cd reflate; $(MAKE)
-+deflate_program: global
-+ $(MAKE) -C deflate
-
--utility_program:
-- cd utility; $(MAKE)
-+reflate_program: global
-+ $(MAKE) -C reflate
-
--connect_program:
-- cd connect; $(MAKE)
-+utility_program: global
-+ $(MAKE) -C utility
-
--help_program:
-- cd help; $(MAKE)
-+connect_program: global
-+ $(MAKE) -C connect
-
--azara_program:
-- cd azara; $(MAKE)
-+help_program: global
-+ $(MAKE) -C help
-
--DataRows:
-- cd DataRows; $(MAKE)
-+azara_program: global
-+ $(MAKE) -C azara
-+
-+DataRows: global
-+ $(MAKE) -C DataRows
-
- clean: \
- global_clean \
-@@ -227,3 +230,5 @@ azara_realclean:
- DataRows_realclean:
- cd DataRows; $(MAKE) realclean
-
-+
-+.PHONY: global process_program
-diff --git a/peak/makefile b/peak/makefile
-index f3c13b7..4211221 100644
---- a/peak/makefile
-+++ b/peak/makefile
-@@ -97,13 +97,13 @@ COMMAND_OBJS = \
-
- all: peak_find peak_fit
-
--peak_find: local_find global_find
-+peak_find: $(LOCAL_FIND_OBJS) $(GLOBAL_FIND_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_FIND_OBJS) \
- $(GLOBAL_FIND_OBJS) \
- $(LIB) $(MATH_LIB)
-
--peak_fit: local_fit global_fit commands
-+peak_fit: $(LOCAL_FIT_OBJS) $(GLOBAL_FIT_OBJS) $(COMMAND_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_FIT_OBJS) \
- $(GLOBAL_FIT_OBJS) \
-diff --git a/plot1/makefile b/plot1/makefile
-index d1dce2d..e729443 100644
---- a/plot1/makefile
-+++ b/plot1/makefile
-@@ -95,7 +95,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/utility.o \
- $(GLOBAL_DIR)/window.o
-
--plot1: locals globals
-+plot1: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-@@ -110,7 +110,7 @@ locals:
- globals:
- cd $(GLOBAL_DIR); $(MAKE) plot1_objects
-
--.c.o:; $(CC) $(X11_INCLUDE_DIR) $(MOTIF_INCLUDE_DIR) -c $(CFLAGS) $<
-+.c.o:; $(CC) $(X11_INCLUDE_DIR) $(MOTIF_INCLUDE_DIR) -c $(CFLAGS) -I../plot2 $<
-
- clean:
- rm -f *.o
-diff --git a/plot2/makefile b/plot2/makefile
-index a6b7b4a..98e286e 100644
---- a/plot2/makefile
-+++ b/plot2/makefile
-@@ -129,7 +129,7 @@ GLOBAL_PLOT2_NOG_OBJS = \
-
- all: plot2 plot2_nog
-
--plot2: local_plot2 global_plot2
-+plot2: $(LOCAL_PLOT2_OBJS) $(GLOBAL_PLOT2_OBJS)
- $(CC) -o $@ $(CFLAGS) $(LFLAGS) \
- $(LOCAL_PLOT2_OBJS) \
- $(GLOBAL_PLOT2_OBJS) \
-@@ -137,7 +137,7 @@ plot2: local_plot2 global_plot2
- $(LIB) $(MATH_LIB) \
- $(MOTIF_LIB) $(X11_LIB) $(XPM_LIB)
-
--plot2_nog: local_plot2_nog global_plot2_nog
-+plot2_nog: $(LOCAL_PLOT2_NOG_OBJS) $(GLOBAL_PLOT2_NOG_OBJS)
- $(CC) -o $@ $(CFLAGS) $(LFLAGS) \
- $(LOCAL_PLOT2_NOG_OBJS) \
- $(GLOBAL_PLOT2_NOG_OBJS) \
-diff --git a/process/makefile b/process/makefile
-index 22ceeed..72d587b 100644
---- a/process/makefile
-+++ b/process/makefile
-@@ -72,7 +72,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/utility.o \
- $(LINPACK_OBJS)
-
--process: locals globals
-+process: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/project/makefile b/project/makefile
-index 78143fc..ed0f296 100644
---- a/project/makefile
-+++ b/project/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--project: locals globals
-+project: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/reflate/makefile b/reflate/makefile
-index 079a3fc..01ec311 100644
---- a/reflate/makefile
-+++ b/reflate/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--reflate: locals globals
-+reflate: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
-diff --git a/unblock/makefile b/unblock/makefile
-index 510dc9e..d9a0f2b 100644
---- a/unblock/makefile
-+++ b/unblock/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- $(GLOBAL_DIR)/ref.o \
- $(GLOBAL_DIR)/utility.o
-
--unblock: locals globals
-+unblock: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- $(CC) -o $@ $(LFLAGS) \
- $(LOCAL_OBJS) \
- $(GLOBAL_OBJS) \
generated by cgit v1.2.3 (git 2.25.1) at 2024-06-20 22:43:21 +0000