diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Manifest.gz | bin | 22126 -> 22133 bytes | |||
| -rw-r--r-- | sci-biology/embassy-mse/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/embassy-mse/embassy-mse-3.0.0.660.ebuild | 6 | ||||
| -rw-r--r-- | sci-biology/embassy-mse/metadata.xml | 14 | ||||
| -rw-r--r-- | sci-biology/samtools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.20-r4.ebuild | 4 |
6 files changed, 15 insertions, 15 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 9f51fb2222f9..c80b291004a6 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/embassy-mse/Manifest b/sci-biology/embassy-mse/Manifest index b41ff2714e8c..cbb5d6766e6f 100644 --- a/sci-biology/embassy-mse/Manifest +++ b/sci-biology/embassy-mse/Manifest @@ -1,4 +1,4 @@ AUX embassy-mse-3.0.0.650_fix-build-system.patch 3968 BLAKE2B 97999702bc800bb02c0c77969e17f4ab36e6491d494ff09c3fbb20624f75db7392a5c1dbe91d977e3596855a89ccb70525c01cf7952364fb4bac4a8f403ea5d0 SHA512 8abaabce2566d42209e6863c30c6cbb392afc900d52f819e975662699651b7114257a372a50657419355d0af69f1dea80501fe2b3cf57ce1c8ca731d1b7557e4 DIST embassy-mse-3.0.0.660.tar.gz 491747 BLAKE2B 7d072458577a90fc367c5b6ed72d1d36592e42b83b3a4e31126b925ddc76f1946fba14e22b7410f66eb837f686f848bdb1033f3b62084f1423543d7605c4f6b9 SHA512 4ae34de71566464e4352ff7b3bbd19b8bf0571013f34253495cf5cc57240bac9c75192c302eb0231763db1745a7e3e79ebcdcb006e36ea4621a886b213eb96d3 -EBUILD embassy-mse-3.0.0.660.ebuild 560 BLAKE2B 9eab17caab14b9c89b455239cbf5006ccb4454be3d54c9233cbda6bf107e44f0b8e88e514d60eae529892d80afd59e53e2d0dadaa113d4de50eecd6a693d7bd7 SHA512 a6b0a375dc3fe6035df488732848ac6dde8209a641c7f201ab2d6b6e463be87b505d486d207c64f2b690fe437772f78196ba223678788b879d2b21b2e3e1cedc -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +EBUILD embassy-mse-3.0.0.660.ebuild 539 BLAKE2B 91a33c56fb6a4d36f5d4ea39d0c2da09790e4020113c08ee9b4f994882ae20ffae9aa2a5c02d016c5fd01dbc1c389417cc7be138404c71118ce26b8868c2501b SHA512 471381ef53268938a0b166904e070ca12ef4c541900f62205300531c70b67c419fba6b312649b25c3b7a68b493ba84eb0c9b05239b927ff029bc8e7156f92388 +MISC metadata.xml 337 BLAKE2B afa7663960962613bc67d5cedc6b06afc3722c3c04abe717c668cc25353ff799806a062ba2b051be875ea3532e7eef5ad7df74178cad2fe07123f114f140f546 SHA512 ac0a67680b4558c001eff032a46434411850c09b09ee9622d4fc3de93a45c3b382fdfec936feb58196903bf685a7000060e7d4be9c452d3806467c2eeb8b18d6 diff --git a/sci-biology/embassy-mse/embassy-mse-3.0.0.660.ebuild b/sci-biology/embassy-mse/embassy-mse-3.0.0.660.ebuild index f3b553cd1d62..cd9425254fb0 100644 --- a/sci-biology/embassy-mse/embassy-mse-3.0.0.660.ebuild +++ b/sci-biology/embassy-mse/embassy-mse-3.0.0.660.ebuild @@ -9,16 +9,16 @@ EBO_EAUTORECONF=1 inherit emboss-r2 KEYWORDS="~amd64 ~x86 ~x86-linux" -IUSE="ncurses" -RDEPEND="ncurses? ( sys-libs/ncurses:0= )" +RDEPEND="sys-libs/ncurses:0=" +DEPEND="${RDEPEND}" S="${WORKDIR}/MSE-3.0.0.650" PATCHES=( "${FILESDIR}"/${PN}-3.0.0.650_fix-build-system.patch ) src_configure() { - emboss-r2_src_configure $(use_enable ncurses curses) + emboss-r2_src_configure --enable-curses } src_install() { diff --git a/sci-biology/embassy-mse/metadata.xml b/sci-biology/embassy-mse/metadata.xml index d1b9a7602ec2..8a0ec21fe3df 100644 --- a/sci-biology/embassy-mse/metadata.xml +++ b/sci-biology/embassy-mse/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">emboss</remote-id> - </upstream> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">emboss</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index d244f445e4e2..6154bc4f7273 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,6 +1,6 @@ AUX samtools-0.1.20-buildsystem.patch 6737 BLAKE2B 71445f57735903bccc2720a32f42b27093f670e383d2d194b5692b1ba536e3df44204711cf4574b3933e5ce00605b661b1a36d79ca7f193ce36816271a3f8214 SHA512 ecb05971fbea4570ec161a165cb581b38ed727bb7e5b769862984bf035414cd564ab809882dc3272f8b192feeb86e29247d7327afa73ff668b01c03c58bb177d DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5 DIST samtools-1.10.tar.bz2 4721173 BLAKE2B 103c71ec5740eac151a4fc40d67286ee00123c7befd5f654cf5c89812bda44f82b38ab662a4a3216ac84434cabab49500b903612137f97f89a7ea38063e8fc08 SHA512 828ec2638592b440e06b81eafc57634416ab54dac6caaecb06f22a90e9bf99da1fd8bb54509cb98591899c4e097ac9038ee5d57ea7bfe1a18967cde4018d840a -EBUILD samtools-0.1.20-r4.ebuild 2040 BLAKE2B d90fc78a99b4134ba1a277ceb904c65592f1d29222822f5c97e31a46cbc4138af6adc763c7b05cf26bc0de06ac23ca0b8d8891841ecfd6c1b3fafd270e24216d SHA512 855e19ca8d0dcb9d472398895c666324d00355a7b04c075744e7ac58be1d183f7739f9a254c5bbdaf4171ab6324159860be40171693d0f2f5074884b9eba5e87 +EBUILD samtools-0.1.20-r4.ebuild 2049 BLAKE2B d377712eaca931258b37645e6a6b3cc379fdb550ef83a0c272a3eb564d7753185fea53416973e4fdf2c25b79475a81ae72b646ce22c570c934e4eabce8a9ded6 SHA512 c0d387f715ebf1f746ea4e4a7eab85a86ef0bff646c9a69639b17ef02e93c39982941d7eb811a6d67b0e635c9c4e05924d2b89a6809c3bd0592db91894dab4aa EBUILD samtools-1.10.ebuild 991 BLAKE2B 206a77657bc9a82d6a7536d030b726a0450bbba406e4e7ec9cc670ee530b87d871111952c850d4008c436f81d3daeba802eb4a3442b59ff9ab0f5864bc4fcf21 SHA512 efb1f235e3e3996599df79317e9c7c2ca5434b666a93f91c495550ac4846905e99d96dd1a6876d22a489b684bf24a90c6f6afb4cec5677c5c45f28f0c4f35b35 MISC metadata.xml 408 BLAKE2B fcff66a327d0396cd0a1b0cb5c00aeb1bc728759d6d39933651f63e22d966af9c33d14f149d2ee008ca48266da1f24ff5919942d143d066898dc635673153df9 SHA512 71a9d6a299db7717ccd851a4519354c1fd7a373dd79af6fa216ebc9b6b0ccbbccc4394ca00c3f842afee492702f079268c5c83815eaaafa446bf0f37750c62ff diff --git a/sci-biology/samtools/samtools-0.1.20-r4.ebuild b/sci-biology/samtools/samtools-0.1.20-r4.ebuild index d598a3292728..f4b779aa838b 100644 --- a/sci-biology/samtools/samtools-0.1.20-r4.ebuild +++ b/sci-biology/samtools/samtools-0.1.20-r4.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -inherit toolchain-funcs +inherit multilib toolchain-funcs DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" HOMEPAGE="http://samtools.sourceforge.net/" |