summaryrefslogtreecommitdiff
path: root/sci-biology
diff options
context:
space:
mode:
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/Manifest.gzbin22139 -> 22137 bytes
-rw-r--r--sci-biology/bioperl-db/Manifest3
-rw-r--r--sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild2
-rw-r--r--sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild47
4 files changed, 2 insertions, 50 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index 577ebbc7d642..1be341788cfa 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
Binary files differ
diff --git a/sci-biology/bioperl-db/Manifest b/sci-biology/bioperl-db/Manifest
index 2e85a62bb213..c68b7ebf07eb 100644
--- a/sci-biology/bioperl-db/Manifest
+++ b/sci-biology/bioperl-db/Manifest
@@ -1,5 +1,4 @@
AUX bioperl-db-1.6.9-db.patch 1567 BLAKE2B 40a1ba874e745630d886d0531ab90385bb2207073bebc823c52f595fa4752b0b9bf310adf7148ba4c7c5c1ec19ddec226d28a34311c932a0f37da6af1c0dd422 SHA512 a0a2ca951645b70b2e4eb3390598b2a42d6631109500238d6fc482d97a616ec1881738e5dc9af118d37fdf50657916ff275124f409510cf15515dfbc829766c0
DIST BioPerl-DB-1.006900.tar.gz 492799 BLAKE2B fb923533ecdb74e868a3aef0c0c6ba8da419ae3c0e9d2e8c55297aad15563b135b6b00fd158481b31dcacd1125f7e10a557052bd4b04eed3a400c972653ff757 SHA512 e06b8b9aa4188a83128f910d7b4a031f69d36f75e4f2d7210357366379024ef39b58eca97112b5b419f141c82b7518086273cc97c9637382ee5e0ddb9ce28746
-EBUILD bioperl-db-1.6.9-r1.ebuild 2338 BLAKE2B d6a69013bfbca125087ac130e4ffc821d96a396cb6407490bca75d898ac200d5abe404c34f4d8d512f095f78e67d7fb3b44f63b118a85abba17dc32e6e0bc323 SHA512 dbbd5c5c47ea15de8b39e955d225daf3bd39fbbbcf3e614e699439f9f85a7f0f9d205322a7b9ca5d4186a2b77551e24dd8af7e9e44d764e6120266f932f7ee15
-EBUILD bioperl-db-1.6.9.ebuild 914 BLAKE2B 8c295e576c35b00754492c715255fd1816bde6d8477e068f2796b96dfa251d24f24f8f260362d89a8cda4881fd4fb1aba204315105422a6c024f0b6a9f083917 SHA512 0d555ef35d5a6e9fda3a48ffc3c7437ad52110c8c9f2a223f103c15c6a866c6c776b7c8d0b1c5c1848336263c64a6e79f80ba476d6205e8f3a90788236ff13e8
+EBUILD bioperl-db-1.6.9-r1.ebuild 2337 BLAKE2B 1280789bf53691480419a2cac16eebef3dcce19e98b4216660fba58c582c82b30848f01e47e9adf85a5a1288e0da0114ae12eec29ef05fc680f9ffb3188703e1 SHA512 c954983c93fdd76aa5faa600c1d855d7f4e98da88adc63d93a7d6e7c795a14ab75bc073ae6452570d6042f8dca1927b8dc6b23554fb86be367b2368556631e36
MISC metadata.xml 344 BLAKE2B 9a757119f1a9939d57a4f9517b8dd5d68732419d7365fda69af107719aa0dba15c79ac16c746cfe28ce36beb060aaa867bffb078175da25961f9f8b233634d34 SHA512 a477289255247669c332915665c4d414ba2857b5716a60e8aec1bf8d1c38009c9fcfb7421a02bdbd9ad566be32bf2b21f57fd21c745aa62185d5dcd13d78bf70
diff --git a/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild b/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild
index ad90650b3c5b..b36c22532f35 100644
--- a/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild
+++ b/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild
@@ -14,7 +14,7 @@ DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL s
HOMEPAGE="http://www.bioperl.org/"
SLOT="0"
-KEYWORDS="amd64 ~x86"
+KEYWORDS="amd64 x86"
RESTRICT="test"
IUSE="test"
diff --git a/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild b/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild
deleted file mode 100644
index e6f0c45958a9..000000000000
--- a/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="5"
-
-BIOPERL_RELEASE=1.6.9
-
-MY_PN=BioPerl-DB
-MODULE_AUTHOR=CJFIELDS
-MODULE_VERSION=1.006900
-inherit perl-module
-
-DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
-HOMEPAGE="http://www.bioperl.org/"
-
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="test"
-RESTRICT="test"
-SRC_TEST="do"
-
-CDEPEND="
- >=sci-biology/bioperl-${PV}
- dev-perl/DBD-mysql
- dev-perl/DBI
- sci-biology/biosql"
-DEPEND="${CDEPEND}
- dev-perl/Module-Build
- test? (
- dev-perl/Data-Stag
- dev-perl/Sub-Uplevel
- dev-perl/Test-Warn
- dev-perl/Test-Exception
- virtual/perl-Test-Simple
- )
-"
-RDEPEND="${CDEPEND}"
-
-src_install() {
- mydoc="AUTHORS BUGS FAQ"
- perl-module_src_install
-}
-src_test() {
- einfo "Removing bundled test libraries t/lib"
- rm -r "${S}/t/lib" || die "Cannot remove t/lib"
- perl-module_src_test
-}