diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Manifest.gz | bin | 22137 -> 22136 bytes | |||
| -rw-r--r-- | sci-biology/mira/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/mira/mira-4.0.2-r1.ebuild (renamed from sci-biology/mira/mira-4.0.2.ebuild) | 2 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/ncbi-tools-2.2.26-r3.ebuild (renamed from sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild) | 2 | ||||
| -rw-r--r-- | sci-biology/plink/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/plink/plink-1.90_pre140514.ebuild | 10 |
7 files changed, 12 insertions, 8 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 5f89a213cf0b..b4d35e4c4285 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest index ca5165677704..e26af9ae8615 100644 --- a/sci-biology/mira/Manifest +++ b/sci-biology/mira/Manifest @@ -3,5 +3,5 @@ AUX mira-4.0.2-cmath.patch 295 BLAKE2B 30892b3a519682db7e04b1a0169c4018d7f4dd4e3 AUX mira-4.0.2-cout.patch 735 BLAKE2B d386a704829b7f3264ee69d55d7451a5479a9d121e49cbd8d9322c9a27a065073076608569d169982784fcc6cc4ae4423712d15d1c4d642a6b8fd0dd7d5fe3a3 SHA512 9d1aa493d20481d0a7e3eaefba36dc29d7903f70c9a445b6e0ea478d04124e8a81de37c437f0fb28c0a395562db7e78217cf09e500fd4a1f2a1f929c1d4d2a5a DIST mira-4.0.2.tar.bz2 10368046 BLAKE2B cc84c6c13c8024409634ccafd103be8a4f2a9e27fa7f19d2ef401393db9e8063a6fac2f21cd25dfe58e90aee8cf38983369d928241f9bc65e78da0e95fa41d3b SHA512 a7f9845de207cefb87ffa652f4f6b9b85735ef22eeb29b456e4d946ba1675e7dd2c78abb2da56f11fddcb699f5c0700a08ce298196ce1a8e586a758a8d3bdc7e DIST mira_3rdparty_06-07-2012.tar.bz2 31656 BLAKE2B 7e952d96e9073acd8ab1d1fc7c51c37f6526287d31698c5090500d421147285b535e8cab7e49f4e51a5634c901d1cd969206b1727e683d3fcebdc195399e3589 SHA512 4d4dbdf7ab5126f9d47160bee8bc127b6a225de8087f6b9914c754324a74d966333207c86a3f38cf0ea9f91408707e2a24086dbe1318fdfa2870b0c39bc5033b -EBUILD mira-4.0.2.ebuild 2558 BLAKE2B de1f15bf2fc98b4f7487d2a354a319a335357f0decd483ea01584c7de9a4fbddb0717415e4cdd7552865768decb52763d6bbd869c39f8a9461c9349eb8299846 SHA512 65f3ae83abe4f97cb21b16157dbbd172b7c4780eb414acbf1c337bad2890899bd0cc35d0d1e7f51d4e328563f2cdbe0314f8883216c6ccfc6fdb40a4664ba8d0 +EBUILD mira-4.0.2-r1.ebuild 2563 BLAKE2B 7cfb5eb182024af1ef2dc73de85909bdfe57cb95bb1af557c64e2f9ee002eb3363360b27283d8cc31105bd97d4b4fca2d70830bcd02c983402773793c0696409 SHA512 a4783d30af6224c0931370e05d932ea0a98a08487b3036d75b43a303063b575772a385b1ea54758a80987cfcff39512bd506b383178413fb8dfe542b87adbfca MISC metadata.xml 355 BLAKE2B 2557fbd5c3427ccced7fc6d233954a3e9d4297c0bec17158997f4f7fb490b525235ae27fff1ed19113b596de77a23518505e20531c7e40020e3f54932f5d9e6f SHA512 9d9037805b94622cb468553fa27c948de2849ac4c6dc1eafae8c3261554b5e97b631fe77e4e589eff613822d316b2843bcab0c47547b202651c8a804a516554e diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2-r1.ebuild index c37fa2333129..cbd1309c474f 100644 --- a/sci-biology/mira/mira-4.0.2.ebuild +++ b/sci-biology/mira/mira-4.0.2-r1.ebuild @@ -24,7 +24,7 @@ KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" IUSE="doc" CDEPEND=" - dev-libs/boost[threads] + dev-libs/boost:=[threads(+)] dev-util/google-perftools" DEPEND="${CDEPEND} sys-devel/flex diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest index 7bbabc7adc05..c32f0222f1b9 100644 --- a/sci-biology/ncbi-tools/Manifest +++ b/sci-biology/ncbi-tools/Manifest @@ -6,5 +6,5 @@ AUX ncbi-tools-extra_vib.patch 1393 BLAKE2B 3c9e0ffa614e7baccf87beea601561a8f6e1 AUX ncbi-tools-lop.patch 701 BLAKE2B 9df2fd3ba86bc9a4f52d3c1809b4d795392666c601aa607d2377129c42562a99087387eaa69d9e9ae07545ea91808902db65718ccf3d671ca88f7255119b1028 SHA512 706dfb29f9b1eff1fcc7dc1df1d533563d9d12ead5b930930121ad92a3e8c159d1d7cf30acd9f4462772e8f27e6dcf45cd6125f2fa077b3902145f6faf1c8352 AUX ncbirc 57 BLAKE2B 140c208cf1c7dbb6a204e58632c576e4edf0cd71d151b69f70839f1b06ae19db0d74d49179d2f0bc1320a40fabad49bed18a98a8bd2a75f6ecf068e647382c60 SHA512 0b9b68116b362ccc625623abf4e959abfb8555c31117216eefe3093fe2dd122c3ce508fe389c07a069d6f4322d889718e455de65dd3ab7d55a16d947ecb07cfd DIST ncbi-tools-2.2.26.tar.gz 68691452 BLAKE2B 21444227c6896c387f46a5490db1e4cf3ac437f94029c68f11ee3c5438bf2c34584d4b1b0ab18d3996f9c4e423a7e17fece510a96a1aa8be5dea6c5a2688f24c SHA512 da167216b56386b8c91a660e8ea0f3ac39b991d4519af9e02fc26aa16ed602eb3d9d874446f69a8f6840ae31a4d5a29da170e04e8a72b56f8c3ca038d1437014 -EBUILD ncbi-tools-2.2.26-r2.ebuild 4631 BLAKE2B 0a31d2096d49f16b8a5c4a2220fe55aa40557cc33b6a7fa5d4136f86fa0008d24e089b725fa6a12609475c3cbd58c7f379c65a77eab6c957fc811110d60f64f5 SHA512 7d9a4e2dfd3edaa28e36f8caf223b794fb37306270177bfa383f952b96799b177fd68f2688cd79fb81d85801d17d5f9e01faf3d7c8978d77372260b81d95d992 +EBUILD ncbi-tools-2.2.26-r3.ebuild 4660 BLAKE2B ef1a3d2e1751792d2726786309eab8b514c72391c2362ce4927659012c96a991531ff558916d69ab89745259bdaceb75a794cff850deec817a90a3c0c5752804 SHA512 7fbb34e5f2ff5f4615b3f41834643acb89e3f47378301f90a449bee6d8629be6c057c4a04c320c10cc2b867ab13b7eae187b73ff987abaf31e03729e2eca11c2 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild b/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r3.ebuild index 2a3668a82a53..cec2f688b661 100644 --- a/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild +++ b/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r3.ebuild @@ -18,6 +18,8 @@ RDEPEND=" app-shells/tcsh dev-lang/perl media-libs/libpng:0= + virtual/glu + virtual/opengl X? ( media-libs/fontconfig x11-libs/motif:0= diff --git a/sci-biology/plink/Manifest b/sci-biology/plink/Manifest index f7bc93be9327..c7a81385ede8 100644 --- a/sci-biology/plink/Manifest +++ b/sci-biology/plink/Manifest @@ -1,3 +1,3 @@ DIST plink-1.90_pre140514.zip 822157 BLAKE2B 3c29670862de99c9715bc37d8cffc2b02c0cb25ad746975f253ca1e8094b24668cc6739943c68bfa407471f30835a74c6ad027eaa56a92f13445e0a02854cad3 SHA512 679f1e136b11f35f1d49636bc44ffd17e72e4e38edc5daa270cd963ca39f7b8a80f31905a94de517059e5b3ea7a6bf518ae34a5c2af8a05c530bd6df771606c4 -EBUILD plink-1.90_pre140514.ebuild 1119 BLAKE2B 71e5c5abf54d97212a1c21b722f12326052f4f01b0892e7aef288aa22ccc57075ab806268fd5d99b4d638e6ffba01ebeb86855596c038a9a84d72960cc98cf43 SHA512 2867a0d71b034886afef5adc81fe6e48b41b4f9a3dadd72b5286769388bcc7977688dc19eb27b52b6cfa9a952e249d7e876dd0547f455824dd972ce2011b6952 +EBUILD plink-1.90_pre140514.ebuild 1131 BLAKE2B 48e491bcd929d9e126bcc26d1d4c60c8bd6f036ba0b7e8fe0824eece4ad7a4b7c4681918c9dc12af5f247a77b3675fad3dfb10e7fc1152dbb5b651993eb03c4a SHA512 f2058ddd233397fffc694be06cc683020a620a4239e864f5abd1d14456c50fbc11721bd649b4c80185991cb954ddf308edc394ef88e966fa0200435c8f1e8c29 MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a diff --git a/sci-biology/plink/plink-1.90_pre140514.ebuild b/sci-biology/plink/plink-1.90_pre140514.ebuild index ab931553b923..578881ac0f59 100644 --- a/sci-biology/plink/plink-1.90_pre140514.ebuild +++ b/sci-biology/plink/plink-1.90_pre140514.ebuild @@ -14,14 +14,16 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" -DEPEND=" - app-arch/unzip - virtual/pkgconfig" RDEPEND=" sys-libs/zlib virtual/cblas virtual/lapack - " +" +DEPEND=" + ${RDEPEND} + app-arch/unzip + virtual/pkgconfig +" S="${WORKDIR}/" |