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-rw-r--r--sci-biology/t-coffee/files/t-coffee-11.00-set_proper_dir_permissions.patch35
1 files changed, 35 insertions, 0 deletions
diff --git a/sci-biology/t-coffee/files/t-coffee-11.00-set_proper_dir_permissions.patch b/sci-biology/t-coffee/files/t-coffee-11.00-set_proper_dir_permissions.patch
new file mode 100644
index 000000000000..a3f47cd9fce2
--- /dev/null
+++ b/sci-biology/t-coffee/files/t-coffee-11.00-set_proper_dir_permissions.patch
@@ -0,0 +1,35 @@
+Author: Andreas Tille <tille@debian.org>
+Last-Update: Mon, 21 Dec 2015 21:30:36 +0100
+Bug-Debian: https://bugs.debian.org/751579
+Description: When creating subdirectories in $HOME do not
+ make these world writable but keep users umask
+
+--- a/t_coffee_source/util_lib/util.c
++++ b/t_coffee_source/util_lib/util.c
+@@ -7714,6 +7714,10 @@ int my_mkdir ( char *dir_in)
+ int a, buf;
+ char *dir;
+
++ static char *home = getenv ("HOME");
++ static mode_t oldmask = umask(0);
++ int change_umask = 0;
++ if (strncmp (dir_in, home, strlen(home))==0) change_umask = 1;
+
+ dir=(char*)vcalloc ( strlen (dir_in)+strlen (get_home_4_tcoffee())+100, sizeof (char));
+ sprintf ( dir, "%s", dir_in);
+@@ -7733,10 +7737,11 @@ int my_mkdir ( char *dir_in)
+
+ if (access(dir, F_OK)==-1)
+ {
+- mode_t oldmask = umask(0);
+- mkdir (dir, S_IRWXU | S_IRWXG | S_IRWXO);
+- umask(oldmask);
+-
++ if ( change_umask == 1 ) mkdir (dir, 0777-oldmask);
++ else {
++ mkdir (dir, S_IRWXU | S_IRWXG | S_IRWXO);
++ umask(oldmask);
++ }
+ if ( access (dir, F_OK)==-1)
+ {
+ myexit(fprintf_error ( stderr, "\nERROR: Could Not Create Directory %s [FATAL:%s]", dir, PROGRAM)); }