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Diffstat (limited to 'sci-biology/samtools/samtools-1.10-r1.ebuild')
-rw-r--r-- | sci-biology/samtools/samtools-1.10-r1.ebuild | 56 |
1 files changed, 0 insertions, 56 deletions
diff --git a/sci-biology/samtools/samtools-1.10-r1.ebuild b/sci-biology/samtools/samtools-1.10-r1.ebuild deleted file mode 100644 index 940895616906..000000000000 --- a/sci-biology/samtools/samtools-1.10-r1.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit autotools toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-${PV}* - sys-libs/ncurses:=[unicode(+)] - sys-libs/zlib:=" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die - - eautoreconf -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_test() { - # the tview test diffs expect 80-columns output - unset COLUMNS - - default -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -} |