diff options
Diffstat (limited to 'sci-biology/rmblast')
| -rw-r--r-- | sci-biology/rmblast/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/rmblast/metadata.xml | 8 | ||||
| -rw-r--r-- | sci-biology/rmblast/rmblast-1.2-r1.ebuild | 47 |
3 files changed, 0 insertions, 59 deletions
diff --git a/sci-biology/rmblast/Manifest b/sci-biology/rmblast/Manifest deleted file mode 100644 index 1b59326510d7..000000000000 --- a/sci-biology/rmblast/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -DIST rmblast-1.2-gcc47.patch.bz2 7803 BLAKE2B cd3bb1aa2b6eb9e188f28589d42ce91f027866d91013f2a6123ee61e7ce28f980b858e775bc15313cf1573f0bc827f9e663d46c1bd0d2fe218745cfbbc3781a1 SHA512 4cd72dd5c777ad866b9cf674384872de5424404b524ac536e58ab412b98b6601aa5f609d05ea2329b77f16e7aca215bbc6eb3531652e5fe81e48cf997b56d13b -DIST rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz 10744076 BLAKE2B 6539ec8fcd345bcc1c3ecede6acec233cdc343c3df18748e195dc525f4a65fefeee8398471a26dc671bfed8612e010c26b7a8a66a3c7198f142c2e068ff72751 SHA512 e7c2ebd114aee045ea3f3f462cf2658440e13a2d1eb777648386e1c5eeda9f8083af383c019f9b5802d935d6eb2367eef20822afc45233ddb44a426b4dd7ddb6 -EBUILD rmblast-1.2-r1.ebuild 1191 BLAKE2B b096fcac217355ebecf8a33b1f145ae6482663e7437b78d1024858959d1653e2424f250d69fb238118751cb4133016fb17cc584f10a299bb6bcbae2a08806d53 SHA512 b2b4cd8e6eed2df9ff4a39783006515e57614dca8a14e38ae4335badb3af81056d4dad7aa377f78aafc659a06eb6cd8f184b60c4581771e2f6c077d3d635304a -MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/rmblast/metadata.xml b/sci-biology/rmblast/metadata.xml deleted file mode 100644 index ccdff086e20b..000000000000 --- a/sci-biology/rmblast/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/rmblast/rmblast-1.2-r1.ebuild b/sci-biology/rmblast/rmblast-1.2-r1.ebuild deleted file mode 100644 index 20a68f97763c..000000000000 --- a/sci-biology/rmblast/rmblast-1.2-r1.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit epatch flag-o-matic toolchain-funcs - -MY_NCBI_BLAST_V=2.2.23+ - -DESCRIPTION="RepeatMasker compatible version of NCBI BLAST+" -HOMEPAGE="http://www.repeatmasker.org/RMBlast.html" -SRC_URI="http://www.repeatmasker.org/rmblast-${PV}-ncbi-blast-${MY_NCBI_BLAST_V}-src.tar.gz - https://dev.gentoo.org/~mgorny/dist/${P}-gcc47.patch.bz2" - -LICENSE="OSL-2.1" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -RDEPEND="dev-libs/boost" -DEPEND="${RDEPEND} - app-arch/cpio" - -S="${WORKDIR}/${P}-ncbi-blast-${MY_NCBI_BLAST_V}-src/c++" - -src_prepare() { - filter-ldflags -Wl,--as-needed - sed \ - -e 's/-print-file-name=libstdc++.a//' \ - -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \ - -e "/DEF_FAST_FLAGS=/s:=\".*\":=\"${CFLAGS}\":g" \ - -e 's/2.95\* | 2.96\* | 3\.\* | 4\.\* )/2.95\* | 2.96\* | \[3-9\]\.\* )/g' \ - -i src/build-system/configure || die - epatch "${WORKDIR}"/${P}-gcc47.patch -} - -src_configure() { - tc-export CXX CC - - "${S}"/configure --without-debug \ - --with-mt \ - --without-static \ - --with-dll \ - --prefix="${ED}"/opt/${PN} \ - --with-boost="${EPREFIX}/usr/include/boost" \ - || die -} |