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Diffstat (limited to 'sci-biology/picard/picard-1.103.ebuild')
-rw-r--r-- | sci-biology/picard/picard-1.103.ebuild | 69 |
1 files changed, 0 insertions, 69 deletions
diff --git a/sci-biology/picard/picard-1.103.ebuild b/sci-biology/picard/picard-1.103.ebuild deleted file mode 100644 index 7a6111c87746..000000000000 --- a/sci-biology/picard/picard-1.103.ebuild +++ /dev/null @@ -1,69 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI="5" - -JAVA_PKG_IUSE="doc source test" -WANT_ANT_TASKS="ant-apache-bcel dev-java/testng:0 ant-junit4" - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="Java-based command-line utilities that manipulate SAM files" -HOMEPAGE="http://picard.sourceforge.net/" -SRC_URI="https://dev.gentoo.org/~ercpe/distfiles/${CATEGORY}/${PN}/${P}.tar.bz2" - -LICENSE="Apache-2.0" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -CDEPEND="dev-java/snappy:1.0 - dev-java/cofoja:0 - dev-java/commons-jexl:2 - dev-java/ant-core:0" - -DEPEND=">=virtual/jdk-1.6 - dev-java/ant-apache-bcel:0 - test? ( - dev-java/testng:0 - dev-lang/R - ) - ${CDEPEND}" -RDEPEND=">=virtual/jre-1.6 - ${CDEPEND}" - -EANT_BUILD_TARGET="all" -EANT_TEST_TARGET="test" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" -EANT_GENTOO_CLASSPATH="snappy-1.0,cofoja,commons-jexl-2,ant-core" -EANT_TEST_GENTOO_CLASSPATH="${EANT_GENTOO_CLASSPATH},testng" - -java_prepare() { - mkdir "${S}"/lib || die - - epatch "${FILESDIR}"/${PV}-gentoo.patch - - mv "${S}"/src/java/net/sf/samtools/SAMTestUtil.java "${S}"/src/tests/java/net/sf/samtools || die -} - -src_install() { - cd dist || die - - for i in *-${PV}.jar; do - java-pkg_newjar $i ${i/-${PV}/} - rm $i || die - done - - java-pkg_dojar *.jar - for i in *.jar; do - java-pkg_dolauncher ${i/.jar/} --jar $i; - done - - use source && java-pkg_dosrc "${S}"/src/java/* - use doc && java-pkg_dojavadoc "${S}"/javadoc -} - -src_test() { - java-pkg-2_src_test -} |