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-rw-r--r--sci-biology/njplot/files/njplot-2.3-buildsystem.patch59
1 files changed, 0 insertions, 59 deletions
diff --git a/sci-biology/njplot/files/njplot-2.3-buildsystem.patch b/sci-biology/njplot/files/njplot-2.3-buildsystem.patch
deleted file mode 100644
index 61f8b95ea160..000000000000
--- a/sci-biology/njplot/files/njplot-2.3-buildsystem.patch
+++ /dev/null
@@ -1,59 +0,0 @@
- makefile | 16 ++++++++--------
- 1 file changed, 8 insertions(+), 8 deletions(-)
-
-diff --git a/makefile b/makefile
-index ccb7dc2..9488c2a 100644
---- a/makefile
-+++ b/makefile
-@@ -7,10 +7,10 @@ NO_PDF = -DNO_PDF
- #PDFLIB = -L$(PDF) -lpdf
-
- # c compiler and linker
--CC = gcc
-+CC ?= gcc
-
- # Vibrant top directory
--VIBRANT = /banques0/ncbiJun04
-+VIBRANT = /usr/include/ncbi
-
-
- # X11 include directory
-@@ -24,15 +24,15 @@ OBJECTS = njplot-vib.o
- OBJUNROOTED = unrooted-vib.o preptree.o
-
-
--CFLAGS = -c -DWIN_MOTIF -Dunix -I$(VIBRANT)/include -I$(VIBRANT)/vibrant -I$(VIBRANT)/corelib \
-+CFLAGS += -c -DWIN_MOTIF -Dunix -I$(VIBRANT)/include -I$(VIBRANT)/vibrant -I$(VIBRANT)/corelib \
- -I$(VIBRANT) -I$(PDF) -I$(X11INCL) -I$(MOTIFINCL) $(HELPFILENAME) $(NO_PDF) \
-- -Wimplicit-function-declaration -g
-+ -Wimplicit-function-declaration
-
- all: njplot unrooted newicktops newicktotxt
-
-
- njplot : $(OBJECTS)
-- $(CC) -g -o njplot $(OBJECTS) \
-+ $(CC) $(LDFLAGS) -o njplot $(OBJECTS) \
- -L$(VIBRANT)/lib \
- -lvibrant -lncbi \
- $(PDFLIB) \
-@@ -40,16 +40,16 @@ njplot : $(OBJECTS)
- -L/usr/X11R6/lib -lXmu -lXt -lX11 -lm
-
- unrooted : $(OBJUNROOTED)
-- $(CC) -g -o unrooted $(OBJUNROOTED) \
-+ $(CC) $(LDFLAGS) -o unrooted $(OBJUNROOTED) \
- -L$(VIBRANT)/lib -lvibrant -lncbi \
- -L$(MOTIFLIB) -lXm \
- -L/usr/X11R6/lib -lXmu -lXt -lX11 -lm
-
- newicktops: njplot-vib.c
-- $(CC) -DNO_GUI -DNO_PDF -o $@ njplot-vib.c -lm
-+ $(CC) $(LDFLAGS) $(CFLAGS) -DNO_GUI -DNO_PDF -o $@ njplot-vib.c -lm
-
- newicktotxt: njplot-vib.c
-- $(CC) -DTTY -o $@ njplot-vib.c -lm
-+ $(CC) -DTTY $(LDFLAGS) $(CFLAGS) -o $@ njplot-vib.c -lm
-
-
- .c.o :