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-rw-r--r--sci-biology/ncbi-tools/files/ncbi-tools-2.2.26-format-security.patch124
1 files changed, 0 insertions, 124 deletions
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-2.2.26-format-security.patch b/sci-biology/ncbi-tools/files/ncbi-tools-2.2.26-format-security.patch
deleted file mode 100644
index c12feff51af1..000000000000
--- a/sci-biology/ncbi-tools/files/ncbi-tools-2.2.26-format-security.patch
+++ /dev/null
@@ -1,124 +0,0 @@
- api/alignmgr2.c | 2 +-
- api/pgppop.c | 2 +-
- api/txalign.c | 10 +++++-----
- desktop/seqpanel.c | 4 ++--
- tools/spidey.c | 4 ++--
- 5 files changed, 11 insertions(+), 11 deletions(-)
-
-diff --git a/api/alignmgr2.c b/api/alignmgr2.c
-index 5b43ef3..4b9007e 100644
---- a/api/alignmgr2.c
-+++ b/api/alignmgr2.c
-@@ -5616,7 +5616,7 @@ NLM_EXTERN void AlnMgr2PrintSeqAlign(SeqAlignPtr sap, Int4 linesize, Boolean isn
- spp = SeqPortNew(bsp, amp->from_row, amp->to_row, amp->strand, seqcode);
- ctr = SeqPortRead(spp, (Uint1Ptr)buf, amp->to_row-amp->from_row+1);
- buf[ctr] = '\0';
-- fprintf(ofp, buf);
-+ fprintf(ofp, "%s", buf);
- SeqPortFree(spp);
- }
- }
-diff --git a/api/pgppop.c b/api/pgppop.c
-index d16d79d..b359378 100644
---- a/api/pgppop.c
-+++ b/api/pgppop.c
-@@ -2994,7 +2994,7 @@ Char DefLine[255];
- if (szSeq){
- if (!DDV_GetSequenceFromParaG(pgp,&szSeq,bspLength,IsAA,NULL,
- NULL,NULL)) continue;
-- fprintf(fp,szSeq);
-+ fprintf(fp, "%s", szSeq);
- fprintf(fp,"\n");
- MemFree(szSeq);
- }
-diff --git a/api/txalign.c b/api/txalign.c
-index 5877f9c..cb35fbc 100644
---- a/api/txalign.c
-+++ b/api/txalign.c
-@@ -1767,13 +1767,13 @@ static CharPtr DrawTextToBuffer(ValNodePtr tdp_list, CharPtr PNTR m_buf, Boolean
- if(options&TXALIGN_HTML&&options&TXALIGN_MASTER&&DbHasGi&&(options&TXALIGN_GET_SEQUENCE)){
- Char checkboxBuf[200];
- sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%ld\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%ld', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
-- sprintf(docbuf+pos,checkboxBuf);
-+ sprintf(docbuf+pos,"%s", checkboxBuf);
-
- pos += StringLen(checkboxBuf);
- }
-
- html_len = StringLen(HTML_buffer);
-- sprintf(docbuf+pos, HTML_buffer);
-+ sprintf(docbuf+pos, "%s", HTML_buffer);
- pos += html_len;
-
- pos += print_label_to_buffer_all_ex(docbuf+pos, tdp->label, tdp->pos,
-@@ -1790,7 +1790,7 @@ static CharPtr DrawTextToBuffer(ValNodePtr tdp_list, CharPtr PNTR m_buf, Boolean
- sprintf(HTML_buffer, "<a name = THC%ld></a><a href=\"http://www.tigr.org/docs/tigr-scripts/hgi_scripts/thc_report.spl?est=THC%ld&report_type=n\">", (long) oip->id, (long) oip->id);
-
- html_len = StringLen(HTML_buffer);
-- sprintf(docbuf+pos, HTML_buffer);
-+ sprintf(docbuf+pos, "%s", HTML_buffer);
- pos += html_len;
- pos += print_label_to_buffer_all_ex(docbuf+pos, tdp->label, tdp->pos,
- tdp->strand, FALSE, TRUE, label_size, num_size, show_strand, strip_semicolon);
-@@ -1799,7 +1799,7 @@ static CharPtr DrawTextToBuffer(ValNodePtr tdp_list, CharPtr PNTR m_buf, Boolean
- sprintf(HTML_buffer, "<a name = TI%ld></a><a href=\"http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&dopt=fasta&val=%ld\">", (long) oip->id, (long) oip->id);
-
- html_len = StringLen(HTML_buffer);
-- sprintf(docbuf+pos, HTML_buffer);
-+ sprintf(docbuf+pos, "%s", HTML_buffer);
- pos += html_len;
- pos += print_label_to_buffer_all_ex(docbuf+pos, tdp->label, tdp->pos,
- tdp->strand, FALSE, TRUE, label_size, num_size, show_strand, strip_semicolon);
-@@ -1816,7 +1816,7 @@ static CharPtr DrawTextToBuffer(ValNodePtr tdp_list, CharPtr PNTR m_buf, Boolean
- if(options&TXALIGN_HTML&&options&TXALIGN_MASTER&&DbHasGi&&(options&TXALIGN_GET_SEQUENCE)){
- Char checkboxBuf[200];
- sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqMaster\" value=\"\" onClick=\"uncheckable('getSeqAlignment%ld', 'getSeqMaster')\">", query_number_glb);
-- sprintf(docbuf+pos,checkboxBuf);
-+ sprintf(docbuf+pos,"%s",checkboxBuf);
-
- pos += StringLen(checkboxBuf);
- }
-diff --git a/desktop/seqpanel.c b/desktop/seqpanel.c
-index 2e78e13..c7538aa 100644
---- a/desktop/seqpanel.c
-+++ b/desktop/seqpanel.c
-@@ -8661,7 +8661,7 @@ WriteAlignmentInterleaveToFileEx
- seqbuf, alnbuf, &alnbuf_len,
- show_substitutions);
- MemCpy (printed_line + label_len + 1 + coord_len, alnbuf, alnbuf_len);
-- fprintf (fp, printed_line);
-+ fprintf (fp, "%s", printed_line);
- }
- fprintf (fp, "\n");
- start = stop + 1;
-@@ -8757,7 +8757,7 @@ extern void WriteAlignmentContiguousToFile
- seqbuf, alnbuf, &alnbuf_len,
- show_substitutions);
- MemCpy (printed_line, alnbuf, alnbuf_len);
-- fprintf (fp, printed_line);
-+ fprintf (fp, "%s", printed_line);
- start = stop + 1;
- stop += seq_chars_per_row;
- }
-diff --git a/tools/spidey.c b/tools/spidey.c
-index d6ce62d..ac9f59a 100644
---- a/tools/spidey.c
-+++ b/tools/spidey.c
-@@ -2088,7 +2088,7 @@ static void SPI_PrintResult(FILE *ofp, FILE *ofp2, SPI_RegionInfoPtr srip, Biose
- fprintf(ofp2, " ");
- ctr++;
- }
-- fprintf(ofp2, buf);
-+ fprintf(ofp2, "%s", buf);
- if (spp){
- SeqPortFree(spp);
- }
-@@ -2417,7 +2417,7 @@ static void SPI_PrintHerdResult(FILE *ofp, FILE *ofp2, SPI_mRNAToHerdPtr herd, S
- ctr = SeqPortRead(spp, (Uint1Ptr)buf, 10);
- if (ctr > 0)
- buf[ctr] = '\0';
-- fprintf(ofp2, buf);
-+ fprintf(ofp2, "%s", buf);
- SeqPortFree(spp);
- }
- done = TRUE;
generated by cgit v1.2.3 (git 2.25.1) at 2024-05-05 20:25:18 +0000