1 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/mcl/files/mcl-14.137-fix-declarations.patch b/sci-biology/mcl/files/mcl-14.137-fix-declarations.patch
new file mode 100644
index 000000000000..4974d352bf7b
--- /dev/null
+++ b/sci-biology/mcl/files/mcl-14.137-fix-declarations.patch
@@ -0,0 +1,53 @@
+Fix QA issues related to implicit declarations.
+
+* QA Notice: Package triggers severe warnings which indicate that it
+*            may exhibit random runtime failures.
+* clmadjust.c:184:10: warning: implicit declaration of function ‘mcxFree’ [-Wimplicit-function-declaration]
+* mcxi.c:42:16: warning: implicit declaration of function ‘isatty’ [-Wimplicit-function-declaration]
+
+--- a/src/impala/iface.h
++++ b/src/impala/iface.h
+@@ -16,15 +16,15 @@
+ 
+ /* This file currently provides nothing */
+ 
+-dim nu_meet_can  ;
+-dim nu_meet_sl   ;
+-dim nu_meet_zip  ;
+-dim nu_diff_can  ;
+-dim nu_diff_sl   ;
+-dim nu_diff_zip  ;
+-double nu_magic  ;
++extern dim nu_meet_can  ;
++extern dim nu_meet_sl   ;
++extern dim nu_meet_zip  ;
++extern dim nu_diff_can  ;
++extern dim nu_diff_sl   ;
++extern dim nu_diff_zip  ;
++extern double nu_magic  ;
+ 
+-dim mclx_n_thread_g  ;
++extern dim mclx_n_thread_g  ;
+ 
+ #endif
+ 
+--- a/src/shcl/clmadjust.c
++++ b/src/shcl/clmadjust.c
+@@ -14,6 +14,7 @@
+ #include "report.h"
+ #include "clmadjust.h"
+ 
++#include "util/alloc.h"
+ #include "util/io.h"
+ #include "util/types.h"
+ #include "util/err.h"
+--- a/src/shmcx/mcxi.c
++++ b/src/shmcx/mcxi.c
+@@ -8,6 +8,7 @@
+ */
+ 
+ #include <stdio.h>
++#include <unistd.h>
+ 
+ #include "stack.h"
+ #include "glob.h"