diff options
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-fix-setBegin-call.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-fix-setBegin-call.patch | 42 |
1 files changed, 0 insertions, 42 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-fix-setBegin-call.patch b/sci-biology/bowtie/files/bowtie-1.1.2-fix-setBegin-call.patch deleted file mode 100644 index af7f7f61cd5e..000000000000 --- a/sci-biology/bowtie/files/bowtie-1.1.2-fix-setBegin-call.patch +++ /dev/null @@ -1,42 +0,0 @@ -Description: Proper type-casting in using seqan::_setBegin(). - Required by newer versions of GCC. -Forwarded: no -Author: Ognyan Kulev <ogi@debian.org> -Last-Update: 2013-04-18 - ---- a/pat.h -+++ b/pat.h -@@ -82,20 +82,20 @@ struct ReadBuf { - ~ReadBuf() { - clearAll(); reset(); - // Prevent seqan from trying to free buffers -- _setBegin(patFw, NULL); -- _setBegin(patRc, NULL); -- _setBegin(qual, NULL); -- _setBegin(patFwRev, NULL); -- _setBegin(patRcRev, NULL); -- _setBegin(qualRev, NULL); -- _setBegin(name, NULL); -+ _setBegin(patFw, (Dna5*)NULL); -+ _setBegin(patRc, (Dna5*)NULL); -+ _setBegin(qual, (char*)NULL); -+ _setBegin(patFwRev, (Dna5*)NULL); -+ _setBegin(patRcRev, (Dna5*)NULL); -+ _setBegin(qualRev, (char*)NULL); -+ _setBegin(name, (char*)NULL); - for(int j = 0; j < 3; j++) { -- _setBegin(altPatFw[j], NULL); -- _setBegin(altPatFwRev[j], NULL); -- _setBegin(altPatRc[j], NULL); -- _setBegin(altPatRcRev[j], NULL); -- _setBegin(altQual[j], NULL); -- _setBegin(altQualRev[j], NULL); -+ _setBegin(altPatFw[j], (Dna5*)NULL); -+ _setBegin(altPatFwRev[j], (Dna5*)NULL); -+ _setBegin(altPatRc[j], (Dna5*)NULL); -+ _setBegin(altPatRcRev[j], (Dna5*)NULL); -+ _setBegin(altQual[j], (char*)NULL); -+ _setBegin(altQualRev[j], (char*)NULL); - } - } - |