diff options
Diffstat (limited to 'sci-biology/augustus')
| -rw-r--r-- | sci-biology/augustus/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/augustus/augustus-3.4.0-r1.ebuild | 48 |
2 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest index f19e66b189b1..a3321dccb4f8 100644 --- a/sci-biology/augustus/Manifest +++ b/sci-biology/augustus/Manifest @@ -1,4 +1,6 @@ AUX augustus-2.5.5-sane-build.patch 5271 BLAKE2B 1ba799aa4d9611087f1455f334dc35616979267bb546aa2ab16f6c8d3d528af84373da482840b455d4d0f0374af24cc3010f6925d4a93c0eb7abe524544fd408 SHA512 5afe12b51b8ce27ef32e8e66dd72be451022757228b4c86dec938b26870885bee06712438a22801a42944d2def8ae8bf4a2d7fdb82e12455c145abcd6f0c4aa1 +DIST augustus-3.4.0.tar.gz 221652100 BLAKE2B dfc8c98107f5a955f688f3d2976ca936faf2ef7004095f6b9d7c1902a36ca5d3c9aef59cab1b82b56cd5c2abc7b67195c5030111ed68557d53128814b1bf6bab SHA512 ca1df1016589f55527a883429edd5024cbc32c1b32036c81f9df5e0967a7d194f5b7a82109e924f380627427d9731caa478e63cad8cd804c01521aed76d8c4a6 DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f EBUILD augustus-2.5.5.ebuild 910 BLAKE2B 5cde42582b4873dbaabe4457a4b7b4f5305b928cbfd7afc3c067cbeb3ea042e82faa56810b4f72078d57f7b0ecd4c96eaa30cfde5ef73d67c26fd05d0035d84e SHA512 03103b4d5cec5dfd46971f1a089d0c02d3cc5ecf7647ee5589e8e297b3f60689c2c763b8c8f2137becfa0e11c0e3c7977186c466085c3065f88eaf5a469bcb9c +EBUILD augustus-3.4.0-r1.ebuild 958 BLAKE2B f5ef14e9e3d9f954eb5676365fdc9bc7f7f10d48b3b7e862fef66ca411d372259ad125fdc80f5479854b2e8ffda29520f5ae6c733f6fde7872ef7d0580958ea9 SHA512 d74481f445e88696674edf54ebf6ee765b5bca3ad9346021c39cd7308f8f875b96a9875995d537dd9542a57bac12c729a7e63ee60c78f74d6b83a2e5b86a5468 MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/augustus/augustus-3.4.0-r1.ebuild b/sci-biology/augustus/augustus-3.4.0-r1.ebuild new file mode 100644 index 000000000000..56c2f49baebc --- /dev/null +++ b/sci-biology/augustus/augustus-3.4.0-r1.ebuild @@ -0,0 +1,48 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DOCS_BUILDER="doxygen" +DOCS_CONFIG_NAME="doxygen.conf" +inherit docs + +DESCRIPTION="Eukaryotic gene predictor" +HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/" +SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}/${P^}" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RDEPEND=" + dev-db/sqlite:3 + dev-db/mysql++ + dev-db/mysql-connector-c + dev-libs/boost:= + sci-biology/bamtools + sci-biology/samtools:0 + sci-libs/gsl + sci-libs/htslib + sci-libs/suitesparse + sci-mathematics/lpsolve + sys-libs/zlib +" +DEPEND="${RDEPEND}" + +src_compile() { + default + docs_compile +} + +src_install() { + einstalldocs + # from upstream Makefile install: + dodir "opt/${P}" + cp -a config bin scripts "${ED}/opt/${P}" || die + local file + for file in bin/*; do + dosym "../${P}/${file}" "/opt/${file}" + done +} |