diff options
Diffstat (limited to 'profiles')
| -rw-r--r-- | profiles/Manifest.gz | bin | 203222 -> 203222 bytes | |||
| -rw-r--r-- | profiles/arch/arm64/use.stable.mask | 4 | ||||
| -rw-r--r-- | profiles/package.mask | 7 | ||||
| -rw-r--r-- | profiles/use.local.desc | 3 |
4 files changed, 10 insertions, 4 deletions
diff --git a/profiles/Manifest.gz b/profiles/Manifest.gz Binary files differindex 36cb176c3d08..8b0724047c07 100644 --- a/profiles/Manifest.gz +++ b/profiles/Manifest.gz diff --git a/profiles/arch/arm64/use.stable.mask b/profiles/arch/arm64/use.stable.mask index c88283580e06..fd6426126dec 100644 --- a/profiles/arch/arm64/use.stable.mask +++ b/profiles/arch/arm64/use.stable.mask @@ -4,10 +4,6 @@ # This file requires eapi 5 or later. New entries go on top. # Please use the same syntax as in use.mask -# Ionen Wolkens <ionen@gentoo.org> (2024-01-27) -# Qt6 is not stable here yet -qt6 - # Mart Raudsepp <leio@gentoo.org> (2023-10-03) # dev-util/sysprof-capture and dev-util/sysprof are not stable yet sysprof diff --git a/profiles/package.mask b/profiles/package.mask index 05697c216b71..da1cc98203b8 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -33,6 +33,13 @@ #--- END OF EXAMPLES --- +# Hans de Graaff <graaff@gentoo.org> (2024-03-22) +# Broken with modern compilers, bug 884249. No longer maintained +# upstream, last release 5 years ago. No reverse dependencies left. Use +# dev-ruby/concurrent-ruby instead. +# Removal on 2024-04-22. +dev-ruby/atomic + # Rahil Bhimjiani <me@rahil.rocks> (2024-03-17) # buildah-1.34.0 isn't getting security fixes from upstream # https://github.com/containers/buildah/issues/5320 diff --git a/profiles/use.local.desc b/profiles/use.local.desc index d7fa230be4b0..7c9ab278f5cc 100644 --- a/profiles/use.local.desc +++ b/profiles/use.local.desc @@ -7149,6 +7149,9 @@ sci-biology/clustalw-mpi:static-pairalign - Use static (as opposed to dynamic) s sci-biology/exonerate:utils - Install the follow binaries: esd2esi, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds sci-biology/fasttree:double-precision - use double precision instead of single-precision floating point (2x memroy required) sci-biology/mcl:blast - Add support for NCBI BLAST data +sci-biology/mothur:boost - Depend on dev-libs/boost for make.contigs to read .gz compressed files. +sci-biology/mothur:gsl - Use sci-libs/gsl to support diversity estimates for estimiator.single. +sci-biology/mothur:hdf5 - Support Biom format 2.0 for the biom.info command via sci-libs/hdf5. sci-biology/newick-utils:xml - Uses dev-libs/libxml2 to handle ornaments sci-biology/ucsc-genome-browser:server - Install genome browser Web application. If this flag is off, only libraries and utilities from the suite are installed. sci-biology/yass:dmalloc - Enable debugging with the dmalloc library |