7 files changed, 85 insertions, 73 deletions
diff --git a/profiles/Manifest.gz b/profiles/Manifest.gz
index f6cc0fbae2d8..7504daafcb9f 100644
--- a/profiles/Manifest.gz
+++ b/profiles/Manifest.gz
diff --git a/profiles/arch/mips/package.use.mask b/profiles/arch/mips/package.use.mask
index 7bfdedc64361..123047b0b6a0 100644
--- a/profiles/arch/mips/package.use.mask
+++ b/profiles/arch/mips/package.use.mask
@@ -1,6 +1,12 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
+# Joshua Kinard <kumba@gentoo.org> (2021-07-31)
+# Mask USE 'test' on MIPS for libgudev.  This requires dev-util/umockdev,
+# which has apparently never had a MIPS keyword.  Running the testsuite can be
+# revisited at a later date.  Bug #805083
+dev-libs/libgudev test
+
 # Matt Turner <mattst88@gentoo.org> (2021-06-10)
 # dev-python/django is not keyworded here
 dev-python/diskcache test
diff --git a/profiles/arch/powerpc/package.use.mask b/profiles/arch/powerpc/package.use.mask
index 88f3708c7434..6f0fc6cdc7a5 100644
--- a/profiles/arch/powerpc/package.use.mask
+++ b/profiles/arch/powerpc/package.use.mask
@@ -366,7 +366,7 @@ sci-chemistry/vmd tachyon
 
 # Pacho Ramos <pacho@gentoo.org>
 # Not keyworded
-media-plugins/gst-plugins-meta dts vcd vpx
+media-plugins/gst-plugins-meta dts vcd
 
 # QA: This entry is moved from INVALID location from default/linux/powerpc.
 # VDPAU is currently not keyworded on PPC since its a nvidia-drivers feature
diff --git a/profiles/arch/riscv/package.use.mask b/profiles/arch/riscv/package.use.mask
index 0913c07249aa..c702c9a2127b 100644
--- a/profiles/arch/riscv/package.use.mask
+++ b/profiles/arch/riscv/package.use.mask
@@ -1,10 +1,14 @@
 # Copyright 2019-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
+# Marek Szuba <marecki@gentoo.org> (2021-07-28)
+# app-cdr/cdrtools fails to compile on riscv
+dev-util/catalyst iso
+
 # Yixun Lan <dlan@gentoo.org> (2021-07-27)
-# depend on sci-physics/bullet, media-libs/libv4l, media-libs/libsdl2
+# depend on sci-physics/bullet, media-libs/libv4l
 # which not keyworded
-dev-libs/efl physics sdl v4l
+dev-libs/efl physics v4l
 
 # Marek Szuba <marecki@gentoo.org> (2021-07-27)
 # dev-libs/boxfort does not support riscv64 yet, meaning
@@ -46,6 +50,7 @@ dev-python/pandas doc full-support test
 # LuaJIT does not support riscv
 app-text/texlive-core luajittex
 dev-texlive/texlive-basic luajittex
+www-servers/nginx nginx_modules_http_lua
 
 # Marek Szuba <marecki@gentoo.org> (2021-07-11)
 # Causes 35 tests to fail with "fatal llvm error"
@@ -62,7 +67,6 @@ mail-mta/courier fax
 # Ye Cao <ye.c@rioslab.org> (2021-07-02)
 # Dependencies not keyworded, not tested
 dev-python/ipython nbconvert notebook
-dev-python/matplotlib wxwidgets
 
 # Marek Szuba <marecki@gentoo.org> (2021-07-05)
 # Dependencies not keyworded here yet:
@@ -72,12 +76,14 @@ app-editors/emacs gconf m17n-lib xwidgets
 app-crypt/heimdal afs
 #  - app-xemacs/ruby-modes (and by extension xemacs itself)
 dev-lang/ruby xemacs
-#  - sci-libs/gdal
-dev-python/networkx extras
 #  - dev-ruby/asciidoctor
 dev-libs/nanomsg doc
+#  - sci-libs/gdal
+dev-python/networkx extras
 #  - app-text/dblatex & media-gfx/transfig
 dev-util/ragel doc
+#  - Qt5 & KDE
+dev-vcs/subversion kwallet
 #  - media-libs/dumb, media-libs/openal
 media-libs/allegro dumb openal
 #  - media-gfx/nvidia-texture-tools
@@ -88,8 +94,8 @@ net-analyzer/rrdtool rados ruby
 net-misc/connman iwd ofono
 #  - dev-util/aruba & dev-util/cucumber
 sys-block/thin-provisioning-tools test
-#  - sys-cluster/rdma-core | sys-fabric/ofed, sys-cluster/knem, sys-fabric/infinipath-psm, sys-fabric/librdmacm
-sys-cluster/openmpi openmpi_fabrics_ofed openmpi_fabrics_knem openmpi_fabrics_psm openmpi_ofed_features_control-hdr-padding openmpi_ofed_features_dynamic-sl openmpi_ofed_features_rdmacm openmpi_ofed_features_udcm
+#  - sys-cluster/knem, sys-fabric/infinipath-psm
+sys-cluster/openmpi openmpi_fabrics_knem openmpi_fabrics_psm
 #  - sys-fabric/ofed, dev-db/mariadb | dev-db/mysql
 sys-cluster/slurm ofed slurmdbd
 
@@ -143,12 +149,6 @@ net-libs/libproxy spidermonkey webkit kde networkmanager
 dev-libs/efl avif
 media-libs/gd avif heif
 
-# Sam James <sam@gentoo.org> (2021-02-26)
-# dev-libs/efl not keyworded here
-# and is a desktop application mainly
-# bug #773178
-app-crypt/pinentry efl
-
 # Joonas Niilola <juippis@gentoo.org> (2021-01-15)
 # Dependency not keyworded on this arch.
 app-text/enchant voikko
@@ -166,28 +166,10 @@ net-misc/openssh security-key
 dev-libs/libpcre2 jit
 dev-libs/libpcre jit
 <dev-vcs/git-2.31.0 pcre-jit
+www-servers/nginx pcre-jit
 
-# Not yet tested / unkeyworded dependencies
-# This includes also packages which do not support python-3 or
-# do not support python-3.7 yet.
-
-app-admin/syslog-ng mongodb test
+# app-shells/fish not keyworded due to failing tests
 dev-python/argcomplete test
-dev-python/aiohttp doc test
-dev-python/jinja doc
-dev-python/lxml test
-dev-python/pbr test
+
+# Several dependencies not keyworded due to failing tests.
 dev-python/pypiserver test
-dev-python/setuptools test
-dev-python/sphinx doc test
-dev-python/twisted test
-dev-python/urllib3 test
-dev-util/catalyst iso
-dev-util/pkgconf test
-dev-vcs/git highlight subversion
-sys-libs/libcxx static-libs
-media-libs/fontconfig doc
-net-libs/gnutls test-full
-net-libs/libpcap rdma
-net-misc/ntp openntpd
-sys-devel/gettext cvs
diff --git a/profiles/base/make.defaults b/profiles/base/make.defaults
index 0be6a25cde1e..a037994c9e83 100644
--- a/profiles/base/make.defaults
+++ b/profiles/base/make.defaults
@@ -151,7 +151,7 @@ TWISTED_DISABLE_WRITING_OF_PLUGIN_CACHE="1"
 
 # Aaron W. Swenson <titanofold@gentoo.org> (2017-07-09)
 # Default target(s) for postgres{,-multi}.eclass
-POSTGRES_TARGETS="postgres10 postgres11"
+POSTGRES_TARGETS="postgres12 postgres13"
 
 # Michael Orlitzky <mjo@gentoo.org> (2017-11-17)
 #
diff --git a/profiles/package.mask b/profiles/package.mask
index cac5efe8bf9d..d0e2c93abd7c 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -32,6 +32,52 @@
 
 #--- END OF EXAMPLES ---
 
+# David Seifert <soap@gentoo.org> (2021-08-01)
+# Dropped into ::gentoo, then unmaintained. Multiple versions behind
+# upstream, GCC 11 bug open, lacks python 3.10, python library without
+# revdeps. Bug #790137, #792870, removal in 30 days.
+sci-libs/sktime
+
+# David Seifert <soap@gentoo.org> (2021-08-01)
+# Last release 10 years ago, EOL upstream, no other distro packages this
+# anymore, tons of bugs. Revdeps are unmaintained too and out of date.
+# Bug #798015, removal in 30 days.
+sci-biology/ncbi-tools
+sci-biology/njplot
+sci-biology/psipred
+sci-chemistry/mars
+sci-libs/rosetta-fragments
+
+# Andreas K. Hüttel <dilfridge@gentoo.org> (2021-07-31)
+# Obsolete; all versions in current Perl core distributions
+# are newer, and no virtuals currently pull these packages.
+# Removal in 30 days.
+perl-core/ExtUtils-MakeMaker
+perl-core/ExtUtils-Manifest
+perl-core/File-Path
+perl-core/Getopt-Long
+perl-core/HTTP-Tiny
+perl-core/JSON-PP
+perl-core/libnet
+
+# David Seifert <soap@gentoo.org> (2021-07-30)
+# games-engines/renpy has been gone for 6 months, the
+# eselect module has no use anymore and the ebuild has
+# QA issues. Bug #805275, removal in 30 days.
+app-eselect/eselect-renpy
+
+# Miroslav Šulc <fordfrog@gentoo.org> (2021-07-30)
+# these libs have no consumers, removal in 30 days
+# see bug: https://bugs.gentoo.org/805152
+dev-java/jgoodies-animation
+dev-java/jgoodies-binding
+dev-java/jgoodies-forms
+
+# Joonas Niilola <juippis@gentoo.org> (2021-07-29)
+# Upstream provided migration instructions from 2. -> 3. update, 
+# breaks if not all at least many revdeps. #805011 for tracker bug.
+>=net-libs/mbedtls-3.0.0
+
 # Sam James <sam@gentoo.org> (2021-07-26)
 # Fails to build with GCC 11. No activity upstream.
 # Removal on 2021-08-26. bug #740536, bug #624746.
@@ -310,11 +356,6 @@ dev-python/pathlib2
 dev-python/traceback2
 dev-python/unittest2
 
-# Sergei Trofimovich <slyfox@gentoo.org> (2021-07-05)
-# The platform is outdated and not maintained anymore.
-# Mask for removal in 30 days.
-dev-haskell/haskell-platform
-
 # Georgy Yakovlev <gyakovlev@gentoo.org> (2021-07-04)
 # severely broken nfs
 # possibly depper problem due to bug in mm/page_alloc
@@ -340,15 +381,6 @@ dev-ruby/shotgun
 # Masked for removal in 30 days.
 dev-ruby/source_map
 
-# Sergei Trofimovich <slyfox@gentoo.org> (2021-07-02)
-# Outdated, not really maintained. Grab it if you like.
-# Masked for removal in 30 days. bug #800097.
-x11-plugins/purple-mattermost
-
-# Sergei Trofimovich <slyfox@gentoo.org> (2021-07-02)
-# Masked for removal in 30 days.
-media-sound/xmms2-scrobbler
-
 # David Seifert <soap@gentoo.org> (2021-07-01)
 # Berkeley DB slots that are long past EOL by Oracle,
 # maintenance burden, and no real path forward by Oracle.
@@ -422,12 +454,6 @@ media-gfx/povtree
 >=dev-lang/ocaml-4.12
 =dev-ml/camlp4-4.12
 
-# Stephan Hartmann <sultan@gentoo.org> (2021-06-05)
-# Dev channel releases are only for people who
-# are developers or want more experimental features
-# and accept a more unstable release.
->=www-client/chromium-93
-
 # Bernard Cafarelli <voyageur@gentoo.org> (2021-06-04)
 # Alpha versions of fetchmail 7
 # Add support for OAUTH2 for those needing it
@@ -472,14 +498,14 @@ dev-java/werken-xpath
 
 # Sergei Trofimovich <slyfox@gentoo.org> (2021-05-16)
 # Mask gcc-7 branch (ended upstream support). Please switch
-# to a freshed gcc branch.
+# to a fresher gcc branch.
 <sys-devel/gcc-8
 <dev-util/nvidia-cuda-toolkit-10
 <dev-util/nvidia-cuda-sdk-10
 
 # Sergei Trofimovich <slyfox@gentoo.org> (2021-05-16)
 # Mask gcc-6 branch (ended upstream support). Please switch
-# to a freshed gcc branch.
+# to a fresher gcc branch.
 <sys-devel/gcc-7
 
 # Sam James <sam@gentoo.org> (2021-05-09)
@@ -521,10 +547,9 @@ dev-java/werken-xpath
 =media-fonts/culmus-0.133-r1
 
 # Lars Wendler <polynomial-c@gentoo.org> (2021-03-22)
-# Has unidentified race condition on very fast CPUs that causes maintainer-
-# mode to be triggered.
-# Most likely caused by the following upstream commit:
-#   https://git.savannah.gnu.org/cgit/autoconf.git/commit/?id=aba75f6d4a9c875a9d5d90a07c6b3678db66a4bf
+# On fast CPUs eautoreconf skips intermediate steps,
+# enables maintainer-mode or fails automake assertions:
+# bug #782985
 sys-devel/autoconf:2.71
 
 # Sam James <sam@gentoo.org> (2021-03-03)
diff --git a/profiles/use.local.desc b/profiles/use.local.desc
index 395d55f62969..26f4c4c7e88a 100644
--- a/profiles/use.local.desc
+++ b/profiles/use.local.desc
@@ -85,7 +85,6 @@ app-admin/mcollective:client - Install client utilities
 app-admin/openrc-settingsd:systemd - Use the versions of dbus and polkit files provided by sys-apps/systemd
 app-admin/pass:X - Use x11-misc/xclip to copy passwords to the clipboard.
 app-admin/pass:dmenu - Add support for x11-misc/dmenu with the 'passmenu' program.
-app-admin/pass:fish-completion - Enable fish completion support.
 app-admin/pass:git - Use dev-vcs/git for password revisions.
 app-admin/pass:importers - Allow importing passwords from other password managers using various contributed scripts.
 app-admin/pass-otp:qrcode - Add support for qrcodes using media-gfx/qrencode
@@ -625,6 +624,8 @@ app-emulation/virtualbox:udev - Controls installation of special USB udev rules.
 app-emulation/virtualbox:vboxwebsrv - Build and install the VirtualBox webservice
 app-emulation/virtualbox-modules:pax-kernel - Apply patch needed for pax enabled kernels
 app-emulation/vkd3d:spirv-tools - Enable SPIRV shader debugging support using dev-util/spirv-tools
+app-emulation/wine-gecko:shared - Install pre-unpacked files which do not need to be copied into the Wine prefix
+app-emulation/wine-mono:shared - Install pre-unpacked files which do not need to be copied into the Wine prefix
 app-emulation/wine-staging:capi - Enable ISDN support via CAPI
 app-emulation/wine-staging:custom-cflags - Bypass strip-flags; use at your own peril
 app-emulation/wine-staging:dos - Pull in games-emulation/dosbox to run DOS applications
@@ -730,7 +731,6 @@ app-i18n/ibus-chewing:gconf - Enable support for gnome-base/gconf
 app-i18n/ibus-handwrite:zinnia - Enable support for app-i18n/zinnia
 app-i18n/ibus-libpinyin:boost - Compile against dev-libs/boost libraries
 app-i18n/ibus-libpinyin:opencc - Enable support for app-i18n/opencc
-app-i18n/ibus-m17n:gtk2 - Build with x11-libs/gtk+:2 instead of x11-libs/gtk+:3
 app-i18n/ibus-pinyin:boost - Enable support for dev-libs/boost
 app-i18n/ibus-sunpinyin:gui - Install graphical user interface tool (ibus-setup-sunpinyin)
 app-i18n/ibus-unikey:gtk2 - Enable support for x11-libs/gtk+:2
@@ -1385,6 +1385,7 @@ dev-games/ogre:poco - When USE=threads, use poco for threading
 dev-games/ogre:resman-pedantic - Resource Manager PEDANTIC : require an explicit resource group. Case sensitive lookup. Some demos might not work with this setting. (default: case-insensitive + sensitive lookup in all groups)
 dev-games/ogre:tbb - When USE=threads, use tbb for threading
 dev-games/ogre:tools - Build and install AssimpConverter (assimp USE flag is enabled), MeshUpgrader, VRMLConverter and XMLConverter
+dev-games/openscenegraph:collada - Enable DAE file support via dev-libs/collada-dom
 dev-games/openscenegraph:dicom - Enable DICOM medical image file support via sci-libs/dcmtk
 dev-games/openscenegraph:egl - Enable EGL support
 dev-games/openscenegraph:fox - Build examples using x11-libs/fox library
@@ -1394,9 +1395,12 @@ dev-games/openscenegraph:openinventor - Build OpenInventor plugin
 dev-games/openscenegraph:osgapps - Build osg applications
 dev-games/openscenegraph:sdl2 - Use media-libs/libsdl2 additionally to media-libs/libsdl
 dev-games/openscenegraph:xrandr - Enable support for the X xrandr extension
+dev-games/openscenegraph-openmw:collada - Enable DAE file support via dev-libs/collada-dom
+dev-games/openscenegraph-openmw:dicom - Enable DICOM medical image file support via sci-libs/dcmtk
 dev-games/openscenegraph-openmw:egl - Enable EGL support
 dev-games/openscenegraph-openmw:fox - Build examples using x11-libs/fox library
 dev-games/openscenegraph-openmw:gdal - Enable support for sci-libs/gdal library
+dev-games/openscenegraph-openmw:las - Enable support for geospatial data LAS LiDAR format using sci-geosciences/liblas
 dev-games/openscenegraph-openmw:openinventor - Build OpenInventor plugin
 dev-games/openscenegraph-openmw:osgapps - Build osg applications
 dev-games/openscenegraph-openmw:sdl2 - Use media-libs/libsdl2 additionally to media-libs/libsdl
@@ -1544,7 +1548,6 @@ dev-haskell/quickcheck-classes:vector - Enable the use of the `vector` package.
 dev-haskell/quickcheck-classes-base:binary-laws - Include infrastructure for testing class laws of binary type constructors. Disabling `unary-laws` while keeping `binary-laws` enabled is an unsupported configuration.
 dev-haskell/quickcheck-classes-base:unary-laws - Include infrastructure for testing class laws of unary type constructors.
 dev-haskell/recaptcha:network-uri - Get Network.URI from the network-uri package.
-dev-haskell/reflection:template-haskell - Enable template haskell.
 dev-haskell/rfc5051:mkunicodedata - build codes generator itself
 dev-haskell/sandi:conduit - Build with conduit
 dev-haskell/semigroupoid-extras:profunctors - You can disable the use of the `profunctors` package using `-f-profunctors`. Disabing this is an unsupported configuration, but it may be useful for accelerating builds in sandboxes for expert users.
@@ -2015,6 +2018,7 @@ dev-libs/jemalloc:lazy-lock - Enable lazy locking (only lock when multi-threaded
 dev-libs/jemalloc:prof - Enable allocation profiling
 dev-libs/jemalloc:stats - Enable statistics calculation/reporting
 dev-libs/jemalloc:xmalloc - Add support for xmalloc (abort-on-out-of-memory)
+dev-libs/kosmindoormap:openinghours - Enable support for highlighting currently open amenities/shops/etc.
 dev-libs/kreport:marble - Enable displaying of maps using kde-apps/marble
 dev-libs/kreport:scripting - Support Qml scripting using dev-qt/qtdeclarative
 dev-libs/libbase58:tools - Build command line base58 tool
@@ -2042,7 +2046,6 @@ dev-libs/libevent:ssl - Support for dev-libs/openssl encryption
 dev-libs/libevent:verbose-debug - Support for verbose debug logging
 dev-libs/libffi:exec-static-trampoline - Don't rely on dynamic code generation for trampolines.
 dev-libs/libffi:pax-kernel - Use PaX emulated trampolines, for we can't use PROT_EXEC
-dev-libs/libffi:pax_kernel - DEPRECATED alias for 'pax-kernel'. Do not use.
 dev-libs/libffi-compat:pax-kernel - Use PaX emulated trampolines, for we can't use PROT_EXEC
 dev-libs/libfido2:nfc - Enable experimental NFC support
 dev-libs/libflatarray:cuda - Enables plugins for NVIDIA GPUs (e.g. CUDAAllocator)
@@ -3011,6 +3014,7 @@ games-emulation/dolphin:discord-presence - Enables Discord Rich Presence, show t
 games-emulation/dolphin:evdev - Enable evdev input support
 games-emulation/dolphin:log - Increase logging output
 games-emulation/dolphin:lto - Add support for link-time optimizations.
+games-emulation/dolphin:mgba - Enables GBA controllers emulation using libmgba.
 games-emulation/dolphin:vulkan - Enable support for Vulkan-based video backend.
 games-emulation/dosbox:core-inline - Enable memory-increasing inlines for better performance but requiring more build time
 games-emulation/dosbox:glide - Enable unofficial Glide emulation via media-libs/openglide
@@ -3325,8 +3329,6 @@ gui-apps/grim:jpeg - Enable JPEG support.
 gui-apps/gtkgreet:layershell - Enable layer shell support
 gui-apps/mako:icons - Enable support for icons
 gui-apps/swayidle:elogind - Enable support for rootless session via elogind
-gui-apps/swayidle:fish-completion - Enable fish completion support
-gui-apps/swaylock:fish-completion - Enable fish completion support
 gui-apps/swaylock:gdk-pixbuf - Enable additional image format support via the x11-libs/gdk-pixbuf library
 gui-apps/waybar:mpd - Enable support for the Music Player Daemon
 gui-apps/waybar:network - Enable libnl support for network related features
@@ -4111,6 +4113,7 @@ media-libs/gd:heif - Enable support for the heif format via media-libs/libheif
 media-libs/gd:webp - Enable support for the webp format
 media-libs/gegl:lensfun - Enable support for media-libs/lensfun.
 media-libs/gegl:umfpack - Enable sparse solving via sci-libs/umfpack.
+media-libs/glfw:wayland-only - Enable wayland support and disable X11 support
 media-libs/gmmlib:custom-cflags - Do not override user CFLAGS like -march, -msse and similar with lib defaults. Not tested by upstream.
 media-libs/grilo:playlist - Enable support for playlists through dev-libs/totem-pl-parser
 media-libs/gst-plugins-bad:bzip2 - Enable bzip2 encoder/decoder plugin
@@ -4678,7 +4681,6 @@ media-sound/pulseaudio:daemon - Build the pulseaudio binary (not-needed for pipe
 media-sound/pulseaudio:doc - Build the doxygen-described API documentation.
 media-sound/pulseaudio:elogind - Use sys-auth/elogind for giving each session a PA client
 media-sound/pulseaudio:equalizer - Enable the equalizer module (requires sci-libs/fftw).
-media-sound/pulseaudio:forget-missing - Enables clearing of unavailable devices from database files which is recommended for GNOME.
 media-sound/pulseaudio:gconf - Ensure gnome-base/gconf is present for pulseaudio GConf to GSettings module automatic migration (keeping the user configuration)
 media-sound/pulseaudio:gdbm - Use sys-libs/gdbm to store PulseAudio databases. Recommended for desktop usage. This flag causes the whole package to be licensed under GPL-2 or later.
 media-sound/pulseaudio:glib - Add support to dev-libs/glib-based mainloop for the libpulse client library, to allow using libpulse on glib-based programs. Build the GSettings PA module.
@@ -5598,7 +5600,6 @@ net-firewall/nufw:pam_nuauth - Add support for pam nufw from PAM
 net-firewall/nufw:plaintext - Add support for authentication with plaintext files
 net-firewall/nufw:prelude - Add support/bindings for the Prelude Intrusion Detection System
 net-firewall/pglinux:cron - Install cron script
-net-firewall/pglinux:logrotate - Install logrotate.d file
 net-firewall/shorewall:init - Adds the capability to place the firewall in a safe state prior to bringing up the network interfaces
 net-firewall/shorewall:ipv4 - Installs everything needed to create a full IPv4 firewall
 net-firewall/shorewall:ipv6 - Adds the capability to create a full IPv6 firewall (requires net-firewall/shorewall ipv4 USE flag)
@@ -6413,7 +6414,6 @@ net-misc/hylafaxplus:jbig - JBIG Fax Compression Support
 net-misc/hylafaxplus:mgetty - Receive faxes via serial port connections
 net-misc/hylafaxplus:pam - hfaxd authentication via PAM
 net-misc/icecast:kate - Add karaoke and text encapsulation support for Ogg files
-net-misc/icecast:logrotate - Install support files for app-admin/logrotate?
 net-misc/icecast:yp - Build support for yp public directory listings
 net-misc/iputils:arping - Build and install arping -- tool for sending ARP requests to peers (see also net-analyzer/arping)
 net-misc/iputils:clockdiff - Build and install clockdiff -- tool for comparing clocks via ICMP packets
@@ -7066,7 +7066,6 @@ sci-biology/abyss:misc-haskell - build abyss-samtobreak tool, pull in haskell to
 sci-biology/bioperl:db - Install sci-biology/bioperl-run
 sci-biology/bioperl:network - Install sci-biology/bioperl-run
 sci-biology/bioperl:run - Install sci-biology/bioperl-run
-sci-biology/bowtie:tbb - Enables building bowtie with the Intel Threading Building Blocks from dev-cpp/tbb. This flag is recommended.
 sci-biology/clustalw-mpi:mpi-njtree - Use MPI (as opposed to serial) code for computing neighbor-joining trees
 sci-biology/clustalw-mpi:static-pairalign - Use static (as opposed to dynamic) scheduling for pair alignments
 sci-biology/exonerate:utils - Install all utilities