15 files changed, 55 insertions, 55 deletions
diff --git a/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.0 b/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.0
index fe0c7ffb6eb3..77073e247498 100644
--- a/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.0
+++ b/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.0
@@ -1,14 +1,14 @@
-BDEPEND=dev-python/six[python_targets_python2_7(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] sci-libs/numkit[python_targets_python2_7(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) python_targets_python3_7? ( dev-lang/python:3.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)]
+BDEPEND=dev-python/six[python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-)] dev-python/numpy[python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-)] dev-python/matplotlib[python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-)] sci-libs/numkit[python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-)] python_targets_python3_6? ( dev-lang/python:3.6 ) python_targets_python3_7? ( dev-lang/python:3.7 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-)] dev-python/setuptools[python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-)]
 DEFINED_PHASES=compile configure install prepare test unpack
 DESCRIPTION=Python framework for Gromacs
 EAPI=7
 HOMEPAGE=https://gromacswrapper.readthedocs.io
-IUSE=python_targets_python2_7 python_targets_python3_6 python_targets_python3_7
+IUSE=python_targets_python3_6 python_targets_python3_7
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-3 LGPL-3
-RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) python_targets_python3_7? ( dev-lang/python:3.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)]
-REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_6 python_targets_python3_7 )
+RDEPEND=python_targets_python3_6? ( dev-lang/python:3.6 ) python_targets_python3_7? ( dev-lang/python:3.7 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-)]
+REQUIRED_USE=|| ( python_targets_python3_6 python_targets_python3_7 )
 SLOT=0
 SRC_URI=https://github.com/Becksteinlab/GromacsWrapper/archive/release-0.8.0.tar.gz -> GromacsWrapper-0.8.0.tar.gz
 _eclasses_=distutils-r1	c5307d9afe217fa087ae282a6df257bb	eutils	fcb2aa98e1948b835b5ae66ca52868c5	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	4eed5e0c72d4544a2291ae46515f5d79	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd
-_md5_=3f4be19707373065b71d71041775f1b9
+_md5_=72c468e398bd8beabcabfe9521714c2c
diff --git a/metadata/md5-cache/sci-chemistry/Manifest.gz b/metadata/md5-cache/sci-chemistry/Manifest.gz
index 89c169824204..3ea0a1d26e50 100644
--- a/metadata/md5-cache/sci-chemistry/Manifest.gz
+++ b/metadata/md5-cache/sci-chemistry/Manifest.gz
diff --git a/metadata/md5-cache/sci-chemistry/ParmEd-2.7.3 b/metadata/md5-cache/sci-chemistry/ParmEd-2.7.3
index 15167da79086..51ac6ba88e2f 100644
--- a/metadata/md5-cache/sci-chemistry/ParmEd-2.7.3
+++ b/metadata/md5-cache/sci-chemistry/ParmEd-2.7.3
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)]
+DEPEND=dev-python/numpy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python3_6(-)?,-python_single_target_python3_6(-)]
 DESCRIPTION=Parameter/topology editor and molecular simulator
 EAPI=6
 HOMEPAGE=https://parmed.github.io/ParmEd/html/index.html
-IUSE=python_targets_python2_7 python_targets_python3_6
+IUSE=python_targets_python3_6
 KEYWORDS=~amd64 ~x86
 LICENSE=LGPL-2
-RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)]
-REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_6 )
+RDEPEND=dev-python/numpy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,-python_single_target_python3_6(-)]
+REQUIRED_USE=|| ( python_targets_python3_6 )
 SLOT=0
 SRC_URI=https://github.com/ParmEd/ParmEd/archive/2.7.3.tar.gz -> ParmEd-2.7.3.tar.gz
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	c5307d9afe217fa087ae282a6df257bb	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	4eed5e0c72d4544a2291ae46515f5d79	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=dc977b282f5b13198b98297e180406a5
+_md5_=cdbdaf38c7805dc4b608e00a021ba743
diff --git a/metadata/md5-cache/sci-chemistry/ParmEd-3.0.3 b/metadata/md5-cache/sci-chemistry/ParmEd-3.0.3
index 7c2e48639b43..565f3ecc2eda 100644
--- a/metadata/md5-cache/sci-chemistry/ParmEd-3.0.3
+++ b/metadata/md5-cache/sci-chemistry/ParmEd-3.0.3
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)]
+DEPEND=dev-python/numpy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python3_6(-)?,-python_single_target_python3_6(-)]
 DESCRIPTION=Parameter/topology editor and molecular simulator
 EAPI=6
 HOMEPAGE=https://parmed.github.io/ParmEd/html/index.html
-IUSE=python_targets_python2_7 python_targets_python3_6
+IUSE=python_targets_python3_6
 KEYWORDS=~amd64 ~x86
 LICENSE=LGPL-2
-RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)]
-REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_6 )
+RDEPEND=dev-python/numpy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,-python_single_target_python3_6(-)]
+REQUIRED_USE=|| ( python_targets_python3_6 )
 SLOT=0
 SRC_URI=https://github.com/ParmEd/ParmEd/archive/3.0.3.tar.gz -> ParmEd-3.0.3.tar.gz
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	c5307d9afe217fa087ae282a6df257bb	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	4eed5e0c72d4544a2291ae46515f5d79	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=f5507bf9466ca8f4794a32605c5a130c
+_md5_=1759a2d24533dcf7076abeec2c3b78f2
diff --git a/metadata/md5-cache/sci-chemistry/chemex-0.6.1 b/metadata/md5-cache/sci-chemistry/chemex-0.6.1
index c0f23c0c7c09..a56d0073c520 100644
--- a/metadata/md5-cache/sci-chemistry/chemex-0.6.1
+++ b/metadata/md5-cache/sci-chemistry/chemex-0.6.1
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=>=dev-python/matplotlib-1.1[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/scipy-0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?]
+DEPEND=>=dev-python/matplotlib-1.1[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) >=sci-libs/scipy-0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?]
 DESCRIPTION=Program to fit chemical exchange induced shift and relaxation data
 EAPI=6
 HOMEPAGE=https://github.com/gbouvignies/chemex
 IUSE=+python_targets_python2_7 +python_single_target_python2_7
 KEYWORDS=~amd64
 LICENSE=BSD
-RDEPEND=>=dev-python/matplotlib-1.1[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/scipy-0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] )
+RDEPEND=>=dev-python/matplotlib-1.1[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) >=sci-libs/scipy-0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] )
 REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=https://github.com/gbouvignies/chemex/archive/0.6.1.tar.gz -> chemex-0.6.1.tar.gz
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	c5307d9afe217fa087ae282a6df257bb	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	36ac48e647d2627de28c87aaffb94753	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=03312f8f2369be320c6294d4180a3c42
+_md5_=833ca19b8d68beb2b29fb1086fe43503
diff --git a/metadata/md5-cache/sci-chemistry/nmrdepaker-1.0 b/metadata/md5-cache/sci-chemistry/nmrdepaker-1.0
index f2f1401822eb..dec9c5a9d31f 100644
--- a/metadata/md5-cache/sci-chemistry/nmrdepaker-1.0
+++ b/metadata/md5-cache/sci-chemistry/nmrdepaker-1.0
@@ -1,15 +1,15 @@
 BDEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?]
 DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=>=dev-python/matplotlib-0.98.5[gtk2,python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=dev-python/numpy-1.2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=dev-python/pygtk-2.12:2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?]
+DEPEND=>=dev-python/matplotlib-0.98.5[gtk2,python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=dev-python/numpy-1.2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) >=dev-python/pygtk-2.12:2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?]
 DESCRIPTION=Program to perform NMR spectra 'De-Pake-ing' and moment calculation
 EAPI=7
 HOMEPAGE=https://launchpad.net/nmrdepaker
 IUSE=+python_targets_python2_7 +python_single_target_python2_7
 KEYWORDS=~amd64
 LICENSE=GPL-3+
-RDEPEND=>=dev-python/matplotlib-0.98.5[gtk2,python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=dev-python/numpy-1.2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=dev-python/pygtk-2.12:2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] )
+RDEPEND=>=dev-python/matplotlib-0.98.5[gtk2,python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=dev-python/numpy-1.2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) >=dev-python/pygtk-2.12:2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] )
 REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=https://launchpad.net/nmrdepaker/1.0/1.0/+download/nmrdepaker-1.0.tar.gz
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	c5307d9afe217fa087ae282a6df257bb	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-single-r1	36ac48e647d2627de28c87aaffb94753	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
-_md5_=9b8d49de083b0559405aa6a93733cb4c
+_md5_=b512e33e1e24b07789eec1822cd4fe3c
diff --git a/metadata/md5-cache/sci-chemistry/nmrglue-0.5-r1 b/metadata/md5-cache/sci-chemistry/nmrglue-0.5-r1
index 4d639395b8b5..2b9211ad56ce 100644
--- a/metadata/md5-cache/sci-chemistry/nmrglue-0.5-r1
+++ b/metadata/md5-cache/sci-chemistry/nmrglue-0.5-r1
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=test? ( dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)]
+DEPEND=test? ( dev-python/matplotlib[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] dev-python/nose[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python3_6(-)?,-python_single_target_python3_6(-)]
 DESCRIPTION=A module for working with NMR data in Python
 EAPI=5
-HOMEPAGE=http://nmrglue.com/
-IUSE=test python_targets_python2_7 python_targets_python3_6
+HOMEPAGE=https://nmrglue.com/
+IUSE=test python_targets_python3_6
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=BSD
-RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_6(-)]
-REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_6 )
+RDEPEND=dev-python/matplotlib[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python3_6(-)?,-python_single_target_python3_6(-)] python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,-python_single_target_python3_6(-)]
+REQUIRED_USE=|| ( python_targets_python3_6 )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/jjhelmus/nmrglue/releases/download/v0.5/nmrglue-0.5.tar.gz
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	c5307d9afe217fa087ae282a6df257bb	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	4eed5e0c72d4544a2291ae46515f5d79	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=089b0b48e2789f743abca498ef186776
+_md5_=ab2665c2ea9926fa516db763ec3d8fc1
diff --git a/metadata/md5-cache/sci-chemistry/pdb2pqr-1.9.0-r1 b/metadata/md5-cache/sci-chemistry/pdb2pqr-1.9.0-r1
index b0e34490e8fd..8aaa4789bf5d 100644
--- a/metadata/md5-cache/sci-chemistry/pdb2pqr-1.9.0-r1
+++ b/metadata/md5-cache/sci-chemistry/pdb2pqr-1.9.0-r1
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sci-chemistry/openbabel-python[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] opal? ( dev-python/zsi[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) pdb2pka? ( sci-chemistry/apbs[python_targets_python2_7(-)?,-python_single_target_python2_7(-),-mpi] ) dev-lang/swig:0 dev-util/scons[python_targets_python2_7] virtual/fortran
+DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) sci-chemistry/openbabel-python[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] opal? ( dev-python/zsi[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) pdb2pka? ( sci-chemistry/apbs[python_targets_python2_7(-)?,-python_single_target_python2_7(-),-mpi] ) dev-lang/swig:0 dev-util/scons[python_targets_python2_7] virtual/fortran
 DESCRIPTION=Automated pipeline for performing Poisson-Boltzmann electrostatics calculations
 EAPI=5
-HOMEPAGE=http://www.poissonboltzmann.org/
+HOMEPAGE=https://www.poissonboltzmann.org/
 IUSE=doc examples opal +pdb2pka python_targets_python2_7
 KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
 LICENSE=BSD
-RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sci-chemistry/openbabel-python[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] opal? ( dev-python/zsi[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) pdb2pka? ( sci-chemistry/apbs[python_targets_python2_7(-)?,-python_single_target_python2_7(-),-mpi] ) virtual/fortran
+RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) sci-chemistry/openbabel-python[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] opal? ( dev-python/zsi[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) pdb2pka? ( sci-chemistry/apbs[python_targets_python2_7(-)?,-python_single_target_python2_7(-),-mpi] ) virtual/fortran
 REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=https://github.com/Electrostatics/apbs-pdb2pqr/releases/download/pdb2pqr-1.9.0/pdb2pqr-src-1.9.0.tar.gz
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	fortran-2	216ce6fa0e81c0c91667aee598c792dd	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	4eed5e0c72d4544a2291ae46515f5d79	python-utils-r1	611c493a4cfef5254350fabc04b606f5	scons-utils	741000d14c0b59263aac3f3cf6e39909	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=787e26e15fbbe6ccc3debd3915e303dc
+_md5_=a88a1b88b3b0c683ceb9e27c9fb32711
diff --git a/metadata/md5-cache/sci-chemistry/pymol-1.8.4.0-r1 b/metadata/md5-cache/sci-chemistry/pymol-1.8.4.0-r1
index 9e400509813e..04ae209af829 100644
--- a/metadata/md5-cache/sci-chemistry/pymol-1.8.4.0-r1
+++ b/metadata/md5-cache/sci-chemistry/pymol-1.8.4.0-r1
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install postinst postrm prepare test
-DEPEND=dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freeglut media-libs/freetype:2 media-libs/glew:0= media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7[tk] ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_python2_7(-)]
+DEPEND=|| ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freeglut media-libs/freetype:2 media-libs/glew:0= media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7[tk] ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_python2_7(-)]
 DESCRIPTION=A Python-extensible molecular graphics system
 EAPI=6
-HOMEPAGE=http://www.pymol.org/
+HOMEPAGE=https://www.pymol.org/
 IUSE=web python_targets_python2_7
 KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=PSF-2.2
-RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freeglut media-libs/freetype:2 media-libs/glew:0= media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7[tk] ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)]
+RDEPEND=|| ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freeglut media-libs/freetype:2 media-libs/glew:0= media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7[tk] ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)]
 REQUIRED_USE=|| ( python_targets_python2_7 )
 RESTRICT=mirror
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/pymol-1.8.4.0.png.xz mirror://sourceforge/project/pymol/pymol/1.8/pymol-v1.8.4.0.tar.bz2
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	c5307d9afe217fa087ae282a6df257bb	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	fdo-mime	995b19d3f30e956b4e1bc5a91fdc4ea7	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	4eed5e0c72d4544a2291ae46515f5d79	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=efffea99b974698dd2cb5acbcd006056
+_md5_=55e40d1c3282bb2868724c5231b14993
diff --git a/metadata/md5-cache/sci-chemistry/pymol-2.3.0-r1 b/metadata/md5-cache/sci-chemistry/pymol-2.3.0-r1
index 1505c517333f..c38429d6865e 100644
--- a/metadata/md5-cache/sci-chemistry/pymol-2.3.0-r1
+++ b/metadata/md5-cache/sci-chemistry/pymol-2.3.0-r1
@@ -1,16 +1,16 @@
 BDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/setuptools[python_targets_python2_7(-)?,-python_single_target_python2_7(-)]
 DEFINED_PHASES=compile configure install postinst postrm prepare test
-DEPEND=dev-libs/msgpack[cxx] dev-libs/mmtf-cpp dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/PyQt5[opengl,python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freetype:2 media-libs/glew:0= media-libs/glm media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] )
+DEPEND=dev-libs/msgpack[cxx] dev-libs/mmtf-cpp || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/PyQt5[opengl,python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freetype:2 media-libs/glew:0= media-libs/glm media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] )
 DESCRIPTION=A Python-extensible molecular graphics system
 EAPI=7
-HOMEPAGE=http://www.pymol.org/
+HOMEPAGE=https://www.pymol.org/
 IUSE=web python_targets_python2_7
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=PSF-2.2
-RDEPEND=dev-libs/msgpack[cxx] dev-libs/mmtf-cpp dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/PyQt5[opengl,python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freetype:2 media-libs/glew:0= media-libs/glm media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)]
+RDEPEND=dev-libs/msgpack[cxx] dev-libs/mmtf-cpp || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-python/pmw:py2[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/pyopengl[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/PyQt5[opengl,python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] media-libs/freetype:2 media-libs/glew:0= media-libs/glm media-libs/libpng:0= media-video/mpeg-tools sys-libs/zlib !sci-chemistry/pymol-apbs-plugin[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] web? ( !dev-python/webpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)]
 REQUIRED_USE=|| ( python_targets_python2_7 )
 RESTRICT=mirror
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/pymol-1.8.4.0.png.xz https://github.com/schrodinger/pymol-open-source/archive/v2.3.0.tar.gz -> pymol-2.3.0.tar.gz
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	c5307d9afe217fa087ae282a6df257bb	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	4eed5e0c72d4544a2291ae46515f5d79	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=0416752abfdb24371f25a3fd29463e85
+_md5_=0cb84fa002a73c1c823ac3354f9f8894
diff --git a/metadata/md5-cache/sci-chemistry/relax-4.0.0-r1 b/metadata/md5-cache/sci-chemistry/relax-4.0.0-r1
index 779a96422fd6..d684e8a417c6 100644
--- a/metadata/md5-cache/sci-chemistry/relax-4.0.0-r1
+++ b/metadata/md5-cache/sci-chemistry/relax-4.0.0-r1
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile install prepare setup test
-DEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/Numdifftools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/wxpython:3.0[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/molmol sci-chemistry/pymol[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/vmd >=sci-libs/bmrblib-1.0.3[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/minfx-1.0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/scipy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-visualization/grace sci-visualization/opendx x11-libs/wxGTK:3.0[X] media-gfx/pngcrush test? ( python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/Numdifftools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/wxpython:3.0[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/molmol sci-chemistry/pymol[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/vmd >=sci-libs/bmrblib-1.0.3[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/minfx-1.0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/scipy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-visualization/grace sci-visualization/opendx x11-libs/wxGTK:3.0[X] ) dev-util/scons[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) test? ( !prefix? ( x11-base/xorg-server[xvfb] ) x11-apps/xhost )
+DEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/Numdifftools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) dev-python/wxpython:3.0[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/molmol sci-chemistry/pymol[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/vmd >=sci-libs/bmrblib-1.0.3[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/minfx-1.0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/scipy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-visualization/grace sci-visualization/opendx x11-libs/wxGTK:3.0[X] media-gfx/pngcrush test? ( python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/Numdifftools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) dev-python/wxpython:3.0[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/molmol sci-chemistry/pymol[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/vmd >=sci-libs/bmrblib-1.0.3[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/minfx-1.0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/scipy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-visualization/grace sci-visualization/opendx x11-libs/wxGTK:3.0[X] ) dev-util/scons[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) test? ( !prefix? ( x11-base/xorg-server[xvfb] ) x11-apps/xhost )
 DESCRIPTION=Molecular dynamics by NMR data analysis
 EAPI=5
-HOMEPAGE=http://www.nmr-relax.com/
+HOMEPAGE=https://www.nmr-relax.com/
 IUSE=test +python_targets_python2_7 +python_single_target_python2_7 test
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=GPL-2
-RDEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/Numdifftools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/wxpython:3.0[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/molmol sci-chemistry/pymol[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/vmd >=sci-libs/bmrblib-1.0.3[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/minfx-1.0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/scipy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-visualization/grace sci-visualization/opendx x11-libs/wxGTK:3.0[X]
+RDEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-python/Numdifftools[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) dev-python/wxpython:3.0[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/molmol sci-chemistry/pymol[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-chemistry/vmd >=sci-libs/bmrblib-1.0.3[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] >=sci-libs/minfx-1.0.11[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/scipy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-visualization/grace sci-visualization/opendx x11-libs/wxGTK:3.0[X]
 REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://download.gna.org/relax/relax-4.0.0.src.tar.bz2
 _eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	36ac48e647d2627de28c87aaffb94753	python-utils-r1	611c493a4cfef5254350fabc04b606f5	scons-utils	741000d14c0b59263aac3f3cf6e39909	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	virtualx	e49dbce7ac14426e1155497476915307	wxwidgets	e1e6e1eb5b3d911b3abd712f611e2312
-_md5_=424e1528a3c8f2ea65835f117a0640cc
+_md5_=bb3a41e07e370cd5a57b769e95724aa9
diff --git a/metadata/md5-cache/sci-chemistry/vmd-1.9.2 b/metadata/md5-cache/sci-chemistry/vmd-1.9.2
index 36d6ecd72452..f59e07bd91ec 100644
--- a/metadata/md5-cache/sci-chemistry/vmd-1.9.2
+++ b/metadata/md5-cache/sci-chemistry/vmd-1.9.2
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install nofetch prepare setup
-DEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) virtual/pkgconfig dev-lang/swig
+DEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) virtual/pkgconfig dev-lang/swig
 DESCRIPTION=Visual Molecular Dynamics
 EAPI=5
 HOMEPAGE=http://www.ks.uiuc.edu/Research/vmd/
 IUSE=cuda gromacs msms povray sqlite tachyon xinerama +python_targets_python2_7 +python_single_target_python2_7
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=vmd
-RDEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
+RDEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
 REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
 RESTRICT=fetch
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/vmd-1.9.2-gentoo-patches.tar.xz vmd-1.9.2.src.tar.gz
 _eclasses_=cuda	bb861e5221b7272ac90c2f12791c1e66	desktop	b1d22ac8bdd4679ab79c71aca235009d	eapi7-ver	756b3f27d8e46131d5cf3c51bd876446	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	36ac48e647d2627de28c87aaffb94753	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=3b3602d69781423798c32266c3e13c12
+_md5_=b0ea4f21d5cce0092c6b58ec9efe78f1
diff --git a/metadata/md5-cache/sci-chemistry/vmd-1.9.3 b/metadata/md5-cache/sci-chemistry/vmd-1.9.3
index 057b32f5563d..2916c24ac463 100644
--- a/metadata/md5-cache/sci-chemistry/vmd-1.9.3
+++ b/metadata/md5-cache/sci-chemistry/vmd-1.9.3
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install nofetch prepare setup
-DEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) virtual/pkgconfig dev-lang/swig
+DEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) virtual/pkgconfig dev-lang/swig
 DESCRIPTION=Visual Molecular Dynamics
 EAPI=5
 HOMEPAGE=http://www.ks.uiuc.edu/Research/vmd/
 IUSE=cuda gromacs msms povray sqlite tachyon xinerama +python_targets_python2_7 +python_single_target_python2_7
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=vmd
-RDEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
+RDEPEND=>=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
 REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
 RESTRICT=fetch
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/vmd-1.9.3-gentoo-patches.tar.xz vmd-1.9.3.src.tar
 _eclasses_=cuda	bb861e5221b7272ac90c2f12791c1e66	desktop	b1d22ac8bdd4679ab79c71aca235009d	eapi7-ver	756b3f27d8e46131d5cf3c51bd876446	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	36ac48e647d2627de28c87aaffb94753	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=d79e8d4e511d4caa002c923a4036b9ca
+_md5_=2dec26546b06c0257c6e0ab428d0ec00
diff --git a/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r1 b/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r1
index a5d15f529f94..97413e2c2da6 100644
--- a/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r1
+++ b/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r1
@@ -1,16 +1,16 @@
 BDEPEND=virtual/pkgconfig dev-lang/swig
 DEFINED_PHASES=compile configure install nofetch prepare setup
-DEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama )
+DEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama )
 DESCRIPTION=Visual Molecular Dynamics
 EAPI=7
 HOMEPAGE=http://www.ks.uiuc.edu/Research/vmd/
 IUSE=cuda gromacs msms povray sqlite tachyon xinerama +python_targets_python2_7 +python_single_target_python2_7
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=vmd
-RDEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
+RDEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
 REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
 RESTRICT=fetch
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/vmd-1.9.3-gentoo-patches.tar.xz vmd-1.9.3.src.tar
 _eclasses_=cuda	bb861e5221b7272ac90c2f12791c1e66	desktop	b1d22ac8bdd4679ab79c71aca235009d	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	multilib	1d91b03d42ab6308b5f4f6b598ed110e	prefix	c2993e4c430c1ee24f278983d6189501	python-single-r1	36ac48e647d2627de28c87aaffb94753	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
-_md5_=31b621c2df338245164f87c909dae1df
+_md5_=05c631fcc7fb55978a8053d979b91154
diff --git a/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r2 b/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r2
index 7454961bbef1..88505c265ca8 100644
--- a/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r2
+++ b/metadata/md5-cache/sci-chemistry/vmd-1.9.3-r2
@@ -1,16 +1,16 @@
 BDEPEND=virtual/pkgconfig dev-lang/swig
 DEFINED_PHASES=compile configure install nofetch postinst postrm preinst prepare setup
-DEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) dev-util/desktop-file-utils x11-misc/shared-mime-info
+DEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) dev-util/desktop-file-utils x11-misc/shared-mime-info
 DESCRIPTION=Visual Molecular Dynamics
 EAPI=7
 HOMEPAGE=http://www.ks.uiuc.edu/Research/vmd/
 IUSE=cuda gromacs msms povray sqlite tachyon xinerama +python_targets_python2_7 +python_single_target_python2_7
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=vmd
-RDEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/chemical-mime-data sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
+RDEPEND=>=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat || ( dev-python/numpy-python2[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),python_single_target_python2_7(+)?] ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/chemical-mime-data sci-chemistry/surf x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
 REQUIRED_USE=^^ ( python_single_target_python2_7 ) python_single_target_python2_7? ( python_targets_python2_7 )
 RESTRICT=fetch
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/vmd-1.9.3-gentoo-patches.tar.xz vmd-1.9.3.src.tar
 _eclasses_=cuda	bb861e5221b7272ac90c2f12791c1e66	desktop	b1d22ac8bdd4679ab79c71aca235009d	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	cabe101302b461f32ecbc3767dfb9e23	multilib	1d91b03d42ab6308b5f4f6b598ed110e	prefix	c2993e4c430c1ee24f278983d6189501	python-single-r1	36ac48e647d2627de28c87aaffb94753	python-utils-r1	611c493a4cfef5254350fabc04b606f5	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	xdg	c7ba313ea1eaf266f95cc6235f7d6a07	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=6fb7e4ef57fb439c6a10b62c7d15eb76
+_md5_=0f790c1e66cb6538d7075521e2942b68