diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
175 files changed, 174 insertions, 174 deletions
diff --git a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 index 9d694288f1e9..2436447625ad 100644 --- a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 +++ b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 @@ -9,5 +9,5 @@ RDEPEND=dev-lang/tcl:0 dev-lang/tk:0 RESTRICT=mirror SLOT=0 SRC_URI=http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=bf78ab8abbdb34e4f7d5c8a0b4429c0f diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 index 388338deb5b0..3911d2504071 100644 --- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 +++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 @@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ ) RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15 SLOT=0 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12 _md5_=bccaeef3292f6df307fc14fb5a2a74b2 diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.9.1 b/metadata/md5-cache/sci-biology/HTSeq-0.9.1 index b0029c4ce24c..fa16ab68245d 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-0.9.1 +++ b/metadata/md5-cache/sci-biology/HTSeq-0.9.1 @@ -10,5 +10,5 @@ RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(- REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/H/HTSeq/HTSeq-0.9.1.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=baebb3e5c138076f90cdaad5bc41573f diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999 index 9b05418ac08a..d8b434faecea 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-9999 +++ b/metadata/md5-cache/sci-biology/HTSeq-9999 @@ -8,5 +8,5 @@ LICENSE=GPL-3+ RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=baebb3e5c138076f90cdaad5bc41573f diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex 05f188d0d178..0998d4a50e74 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/STAR-2.5.3a b/metadata/md5-cache/sci-biology/STAR-2.5.3a index 83bed1cb9522..3a3ed508ddea 100644 --- a/metadata/md5-cache/sci-biology/STAR-2.5.3a +++ b/metadata/md5-cache/sci-biology/STAR-2.5.3a @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=sci-libs/htslib:= SLOT=0 SRC_URI=https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz -> STAR-2.5.3a.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=1eb821b9192887ab1f2ac6b1536037ac diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 index c9d4a42dc066..3133d3e5ee57 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 +++ b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 @@ -9,5 +9,5 @@ LICENSE=abyss RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.2.tar.gz -> abyss-2.0.2.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=3b173739bd4e2f9d61a49918b3b8bc05 diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3 b/metadata/md5-cache/sci-biology/abyss-2.0.3 index 5349a1c16672..2b9909a4c789 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.0.3 +++ b/metadata/md5-cache/sci-biology/abyss-2.0.3 @@ -9,5 +9,5 @@ LICENSE=abyss RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=4c70cbdf60d5dc2d564272b103f2b469 diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 index ba2317b7c8cf..f88250aa56a4 100644 --- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 +++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 @@ -8,5 +8,5 @@ LICENSE=MIT RDEPEND=!sci-biology/allpaths !sci-biology/vaal SLOT=0 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=7993b2efe97dac631506fe76aa46db2b diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3 index bc3b272b9607..8c469417e31e 100644 --- a/metadata/md5-cache/sci-biology/amap-2.2-r3 +++ b/metadata/md5-cache/sci-biology/amap-2.2-r3 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 ) SLOT=0 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-opt-2 77d2e22d0de7640f817d20e861c0ff3f java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-opt-2 77d2e22d0de7640f817d20e861c0ff3f java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=6bd792e8b76c06ee993b88f83e48b907 diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 index fcae4c4ceeb2..8d5d80515806 100644 --- a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 +++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=aec6d1c76d5ea621c66e803800e2b3c4 diff --git a/metadata/md5-cache/sci-biology/arb-6.0.6 b/metadata/md5-cache/sci-biology/arb-6.0.6 index eae63d1b8947..52c2075bd969 100644 --- a/metadata/md5-cache/sci-biology/arb-6.0.6 +++ b/metadata/md5-cache/sci-biology/arb-6.0.6 @@ -10,5 +10,5 @@ RDEPEND=app-text/sablotron media-libs/libpng:= media-libs/tiff:= www-client/lynx RESTRICT=debug? ( test ) SLOT=0 SRC_URI=http://download.arb-home.de/release/arb-6.0.6/arb-6.0.6-source.tgz -> arb-6.0.6.tgz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=c13fb556a26877506fa69c3a46586bbd diff --git a/metadata/md5-cache/sci-biology/ariadne-1.3-r3 b/metadata/md5-cache/sci-biology/ariadne-1.3-r3 index f32eca77a056..fd653146894d 100644 --- a/metadata/md5-cache/sci-biology/ariadne-1.3-r3 +++ b/metadata/md5-cache/sci-biology/ariadne-1.3-r3 @@ -9,5 +9,5 @@ LICENSE=ARIADNE RDEPEND=>=sci-biology/ncbi-tools-0.20041020-r1 SLOT=0 SRC_URI=http://www.well.ox.ac.uk/ariadne/ariadne-1.3.tar.Z -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=a99266aecef97d81f48df25aa43fbb4a diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5 index 5dee675f504a..5cd38316b5a1 100644 --- a/metadata/md5-cache/sci-biology/augustus-2.5.5 +++ b/metadata/md5-cache/sci-biology/augustus-2.5.5 @@ -7,5 +7,5 @@ KEYWORDS=amd64 x86 LICENSE=Artistic SLOT=0 SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=5660f556708e8c3b5d43c9ef832e66ec diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1 index 91d071c94502..c39bcecf1c45 100644 --- a/metadata/md5-cache/sci-biology/bamtools-2.5.1 +++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1 @@ -10,5 +10,5 @@ LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/2.5.1 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs f164325a2cdb5b3ea39311d483988861 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=bddaa64daf006313f77c6152fbc41a8b diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999 index a6db32be1236..ba541ffc5086 100644 --- a/metadata/md5-cache/sci-biology/bamtools-9999 +++ b/metadata/md5-cache/sci-biology/bamtools-9999 @@ -8,5 +8,5 @@ IUSE=static-libs LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/9999 -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs f164325a2cdb5b3ea39311d483988861 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=bddaa64daf006313f77c6152fbc41a8b diff --git a/metadata/md5-cache/sci-biology/bcftools-1.5 b/metadata/md5-cache/sci-biology/bcftools-1.5 index d742343fff32..a1abfc0a8880 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.5 +++ b/metadata/md5-cache/sci-biology/bcftools-1.5 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.5*:= sys-libs/zlib python_targets_pytho REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.5/bcftools-1.5.tar.bz2 -_eclasses_=multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=e289371e3fec376baf8fe36c652ca521 diff --git a/metadata/md5-cache/sci-biology/bcftools-1.9 b/metadata/md5-cache/sci-biology/bcftools-1.9 index f60aabe40c59..0615c00beb35 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.9 +++ b/metadata/md5-cache/sci-biology/bcftools-1.9 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.9*:= sys-libs/zlib:= python_targets_pyt REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2 -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=67c63191569c3370d6eca3ec783afbea diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0 index de9319be6b37..df9687374d06 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.26.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz https://dev.gentoo.org/~mgorny/dist/bedtools-2.26.0-fix-buildsystem.patch.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e072d90aa6492a70f261161c8d5551e5 diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index 55a973139f88..b295ff8606f7 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-perl/XML-Simple SLOT=0 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=abc362f15c5107d96bedfb879ea0375f diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 index 48306c8d44ed..ce8b104ac5a4 100644 --- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 +++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf ) -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=9731727dae2a2514bcaa486b0059272e diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.1 b/metadata/md5-cache/sci-biology/biopandas-0.2.1 index 96b1b58342e9..6eb6159219ff 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.2.1 +++ b/metadata/md5-cache/sci-biology/biopandas-0.2.1 @@ -10,5 +10,5 @@ RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(- REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.1.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=ea88f22f7675491064ad08658a2ba291 diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9 index a5ae5cc0924b..659f7816e00b 100644 --- a/metadata/md5-cache/sci-biology/bioperl-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9 @@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr REQUIRED_USE=minimal? ( !graphviz ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=be22a76392a6e5c121e4b6d388045faa diff --git a/metadata/md5-cache/sci-biology/bioperl-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-9999-r1 index 369b044f02b0..173fdf146b8e 100644 --- a/metadata/md5-cache/sci-biology/bioperl-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-9999-r1 @@ -8,5 +8,5 @@ LICENSE=Artistic GPL-2 PDEPEND=!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) db? ( >=sci-biology/bioperl-db-9999 ) network? ( >=sci-biology/bioperl-network-9999 ) run? ( >=sci-biology/bioperl-run-9999 ) RDEPEND=dev-perl/Data-Stag dev-perl/libwww-perl !minimal? ( dev-perl/Ace dev-perl/Bio-ASN1-EntrezGene dev-perl/Spreadsheet-ParseExcel dev-perl/Spreadsheet-WriteExcel >=dev-perl/XML-SAX-0.15 dev-perl/Graph dev-perl/SOAP-Lite dev-perl/Array-Compare dev-perl/SVG dev-perl/XML-Simple dev-perl/XML-Parser dev-perl/XML-Twig >=dev-perl/HTML-Parser-3.60 >=dev-perl/XML-Writer-0.4 dev-perl/Clone dev-perl/XML-DOM dev-perl/Set-Scalar dev-perl/XML-XPath dev-perl/XML-DOM-XPath dev-perl/Algorithm-Munkres dev-perl/Data-Stag dev-perl/Math-Random dev-perl/PostScript dev-perl/Convert-Binary-C dev-perl/SVG-Graph ) graphviz? ( dev-perl/GraphViz ) dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=210415961127105f0fc625670ba9e423 diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 index e9ce9161bb01..9308743cde4f 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/ RESTRICT=test SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=2470d7ecf1b6ff1902a8d74057748480 diff --git a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 index b557292e68fd..1f04ed9a9bbf 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 @@ -6,5 +6,5 @@ HOMEPAGE=http://www.bioperl.org/ LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 dev-perl/DBI sci-biology/biosql dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=fd4229be06b3975302e9e37ca35601d2 diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 index aa15bb23265c..3de5a58641c5 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 @@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ ) RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)] SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=cb366a6a0c6cf3c12320c2d6d3551abe diff --git a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 index bb9d27fc8f13..1d7c0764ba88 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 @@ -7,5 +7,5 @@ IUSE=test LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=025cd5fa89be402f3296160dbf755c8b diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 index c16e768d6f35..e5ce2c18b700 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl RESTRICT=test SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=9caec4e5b47cbf306a1689903f2a018a diff --git a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 index 5b389117981a..1b5f42bfa723 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 @@ -8,5 +8,5 @@ LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 !minimal? ( dev-perl/Algorithm-Diff dev-perl/XML-Twig dev-perl/IO-String dev-perl/IPC-Run ) dev-lang/perl:=[-build(-)] RESTRICT=test SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=26abe4f8477c1a1c22bd8515484ce1c1 diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68 index 643d73bb56f3..dcd86afedfb7 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.68 +++ b/metadata/md5-cache/sci-biology/biopython-1.68 @@ -10,5 +10,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 ) SLOT=0 SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=d27e2e9df832a55985e7f459f9e4fa81 diff --git a/metadata/md5-cache/sci-biology/biopython-1.71 b/metadata/md5-cache/sci-biology/biopython-1.71 index 004ed8acbbc7..b06fd1577134 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.71 +++ b/metadata/md5-cache/sci-biology/biopython-1.71 @@ -11,5 +11,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/b/biopython/biopython-1.71.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=0227795578e2ffd9791cbebddc3ee0ab diff --git a/metadata/md5-cache/sci-biology/bioruby-1.5.1 b/metadata/md5-cache/sci-biology/bioruby-1.5.1 index b8e804e7adde..450d0ac4feb8 100644 --- a/metadata/md5-cache/sci-biology/bioruby-1.5.1 +++ b/metadata/md5-cache/sci-biology/bioruby-1.5.1 @@ -10,5 +10,5 @@ RDEPEND=ruby_targets_ruby23? ( dev-ruby/libxml[ruby_targets_ruby23] ) ruby_targe REQUIRED_USE=|| ( ruby_targets_ruby23 ruby_targets_ruby24 ) SLOT=0 SRC_URI=mirror://rubygems/bio-1.5.1.gem -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem 4044516b167f460104703fee4a3c7f5f ruby-ng 9ffc1c055a3294fcc48de781c94825f6 ruby-utils 10cec86289e60f4b0d731b2e4b545e5d toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem 4044516b167f460104703fee4a3c7f5f ruby-ng 9ffc1c055a3294fcc48de781c94825f6 ruby-utils 10cec86289e60f4b0d731b2e4b545e5d toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=2aecf9a558ab9d1f3e8760530ccd8e56 diff --git a/metadata/md5-cache/sci-biology/bioruby-1.5.2 b/metadata/md5-cache/sci-biology/bioruby-1.5.2 index c27b9f30784a..7d152a0739f0 100644 --- a/metadata/md5-cache/sci-biology/bioruby-1.5.2 +++ b/metadata/md5-cache/sci-biology/bioruby-1.5.2 @@ -10,5 +10,5 @@ RDEPEND=ruby_targets_ruby23? ( dev-ruby/libxml[ruby_targets_ruby23] ) ruby_targe REQUIRED_USE=|| ( ruby_targets_ruby23 ruby_targets_ruby24 ) SLOT=0 SRC_URI=mirror://rubygems/bio-1.5.2.gem -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem 4044516b167f460104703fee4a3c7f5f ruby-ng 9ffc1c055a3294fcc48de781c94825f6 ruby-utils 10cec86289e60f4b0d731b2e4b545e5d toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem 4044516b167f460104703fee4a3c7f5f ruby-ng 9ffc1c055a3294fcc48de781c94825f6 ruby-utils 10cec86289e60f4b0d731b2e4b545e5d toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=b0f1536271f03758d5e11673ecc9bc58 diff --git a/metadata/md5-cache/sci-biology/blat-34-r2 b/metadata/md5-cache/sci-biology/blat-34-r2 index a099fdb7487b..19a38e3110c0 100644 --- a/metadata/md5-cache/sci-biology/blat-34-r2 +++ b/metadata/md5-cache/sci-biology/blat-34-r2 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=blat SLOT=0 SRC_URI=http://www.soe.ucsc.edu/~kent/src/blatSrc34.zip -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=d48361335699038107318f5ca57533e8 diff --git a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 index 03b9ddc52892..73a9478cda6b 100644 --- a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 +++ b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile SLOT=0 SRC_URI=http://www.daimi.au.dk/~mailund/Blossoc/download/blossoc-1.4.0.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=2fe1853c7621b633d2ee794ef3176e3f diff --git a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 index 3fb3e19c0ed5..fc7b2eeb5a35 100644 --- a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 +++ b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 @@ -9,5 +9,5 @@ LICENSE=Artistic RDEPEND=tbb? ( dev-cpp/tbb ) SLOT=1 SRC_URI=mirror://sourceforge/bowtie-bio/bowtie-1.1.2-src.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=069dc133bc01cabadeda1e327034b7a7 diff --git a/metadata/md5-cache/sci-biology/bowtie-2.2.9 b/metadata/md5-cache/sci-biology/bowtie-2.2.9 index ee20d2cb0949..a87bfeb6b209 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.2.9 +++ b/metadata/md5-cache/sci-biology/bowtie-2.2.9 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=dev-lang/perl tbb? ( dev-cpp/tbb ) SLOT=2 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.2.9/bowtie2-2.2.9-source.zip -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=46d87c867cd445707dc1913cf3dd7eb6 diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.16a b/metadata/md5-cache/sci-biology/bwa-0.7.16a index 2e232b90ce7d..a8fa5eb42cba 100644 --- a/metadata/md5-cache/sci-biology/bwa-0.7.16a +++ b/metadata/md5-cache/sci-biology/bwa-0.7.16a @@ -7,5 +7,5 @@ LICENSE=GPL-3 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=mirror://sourceforge/bio-bwa/bwa-0.7.16a.tar.bz2 -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=b3702a6accf64398e32e84076031919b diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6 index 845de55bfcd1..fe1942a1d776 100644 --- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 +++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=bbe0ae10275a73485487e08f19f4ac1b diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 index 8558214fc432..e68252a12e39 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=9ade45d2e283bc5fcc7eef16725e18ae diff --git a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 b/metadata/md5-cache/sci-biology/clustalw-1.83-r4 index addbc6a04207..6ae2a43af314 100644 --- a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 +++ b/metadata/md5-cache/sci-biology/clustalw-1.83-r4 @@ -6,5 +6,5 @@ KEYWORDS=alpha amd64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~spa LICENSE=clustalw SLOT=1 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/clustalw1.83.UNIX.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=5c8ba46cd87128b1ddae72e6ca3d07db diff --git a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r2 b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r2 index c2661ae4ef3f..5263ee2d3513 100644 --- a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r2 +++ b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r2 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=virtual/mpi SLOT=0 SRC_URI=http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/clustalw-mpi-0.13.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=9e376a1d2ae782d9495b0c6c318aa097 diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 b/metadata/md5-cache/sci-biology/clustalx-2.1-r3 index d101a7355f25..d3312a6787c3 100644 --- a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 +++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r3 @@ -8,5 +8,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 >=sci-biology/clustalw-2.1 SLOT=0 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib b2f01ad412baf81650c23fcf0975fa33 qmake-utils bdf97e69a34b864d6d545f4ec3143ff7 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib b2f01ad412baf81650c23fcf0975fa33 qmake-utils bdf97e69a34b864d6d545f4ec3143ff7 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=c8dbd602c40010526edb4955aa67e1b3 diff --git a/metadata/md5-cache/sci-biology/consed-29 b/metadata/md5-cache/sci-biology/consed-29 index 5f1d124ec16c..ba5cec377b0e 100644 --- a/metadata/md5-cache/sci-biology/consed-29 +++ b/metadata/md5-cache/sci-biology/consed-29 @@ -10,5 +10,5 @@ RDEPEND=x11-libs/libX11 x11-libs/motif:0 sci-biology/samtools:0.1-legacy dev-lan RESTRICT=fetch SLOT=0 SRC_URI=consed-29-sources.tar.gz consed-29-linux.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1e30f1827727dab34c75c8c026745369 diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 index e1306b6feb39..664f3e61e695 100644 --- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 +++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 @@ -10,5 +10,5 @@ RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8e0065b0f455fa63e987f6182ed61fa1 diff --git a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 index 74b7076ef52d..bfc5e616e9a9 100644 --- a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 +++ b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=LGPL-2.1 SLOT=0 SRC_URI=http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=b04d9beffea802bb82f896df101ca660 diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1 index 144e884d6c09..5671d695385b 100644 --- a/metadata/md5-cache/sci-biology/dialign2-2.2.1 +++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=LGPL-2.1 SLOT=0 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=3761a69a47f38308f54ae0b051361ed6 diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4 index 17396a9ac4c1..48653f641637 100644 --- a/metadata/md5-cache/sci-biology/diya-1.0_rc4 +++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)] SLOT=0 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=5d4639d7c08c43e2c2208492508fd56c diff --git a/metadata/md5-cache/sci-biology/elph-1.0.1-r1 b/metadata/md5-cache/sci-biology/elph-1.0.1-r1 index 945af0056650..22988a9cccc1 100644 --- a/metadata/md5-cache/sci-biology/elph-1.0.1-r1 +++ b/metadata/md5-cache/sci-biology/elph-1.0.1-r1 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos LICENSE=Artistic SLOT=0 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/elph/ELPH-1.0.1.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=dbee2f511488caf9eadadb20d043a2da diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 index 03e17f077002..82554fb0f47e 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4166ba28131fdf70907b31300aa4c08b diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 index f37a6d89d18d..ce14c5cc20b0 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=ef491b452e56be12961f62b16961f4f1 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 index 07bd7cbd2c73..11806bb16498 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0 diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 index 12a915b8873f..bcf0ace1ce03 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=9f8b2caa273f4ae3b0463e6de6782660 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 index cc266da5e62c..15f7f08c779c 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=920906439fbc5278460201b23a615736 diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 index b5641495b75f..90ce41b75167 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d82c7c44ec76fa5d6165769a73e5df9a diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 index 5a2e558da4d1..9596aa11016b 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1b156bed7ea031aeb5464836dd987f18 diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 index f59164684d87..d7fa4c7154f4 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=83d02ae22d4e1864669639d9289cd112 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 index 7e3095aae500..8e75a491c9d2 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=73b0c29964ea3506d18ef6b6c8df70e1 diff --git a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 index a764d6fb7cfe..c58582196daf 100644 --- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 +++ b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/meme dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=b18db6d7a2159272c7b69d34a14dc9b5 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 index ad2dd66d7072..b4deeb91f1a2 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=84df94b7c4b0f044de45cef524cbf453 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 index 0135c2165636..a0ed958dbe99 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 freedist RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=00620d36fbf4790dc2ecfb240ba9816c diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 index 4aedcbe3daf1..9ec1bb8ddace 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4cb685046b5a39b624eb3467b815c2c4 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 index 4f4dab5f6ee3..7419bca4d860 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=634d624be78f958ed7fca02e7dc43bd4 diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 index 8b469b4a4b34..fc8c7b834d72 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e50220ee11093554b589c1f9f53e7c09 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 index 5a6dc87f40f2..c501c6724da0 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d257de40bcdb33c0735daac8a5f15fda diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 index 38a8939ff3aa..88218b9dab02 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 @@ -10,5 +10,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 22ae82e140bdd95d17a34fd5fd733190 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d emboss-r2 4cc77fdd8beda583053fe8bf1a2cc8a5 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 22ae82e140bdd95d17a34fd5fd733190 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=99a47266a2a8f2fd0a874111491146e2 diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d index 4a62f1a5d0b8..8ace90dc39b9 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1d +++ b/metadata/md5-cache/sci-biology/eugene-4.1d @@ -9,5 +9,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0= RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=683d1e7f9daeda6cd20b92117330ea81 diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 index 1d0f76bde2b1..e10947a84f0f 100644 --- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 +++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 @@ -10,5 +10,5 @@ RDEPEND=dev-libs/glib:2 REQUIRED_USE=test? ( utils ) SLOT=0 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=2efd53d13e6f08e4144477038f41e4af diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1 index 3ed04e3aaf25..6188832ce840 100644 --- a/metadata/md5-cache/sci-biology/express-1.5.1 +++ b/metadata/md5-cache/sci-biology/express-1.5.1 @@ -8,5 +8,5 @@ LICENSE=Artistic RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib SLOT=0 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=10c478f1e1a9a533322963cf4c2e92f8 diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e index 5edda6288d70..e54a0b8e7f7e 100644 --- a/metadata/md5-cache/sci-biology/fasta-36.3.5e +++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=fasta SLOT=0 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4eed9011a4fc400bdf3adf77be6c8fe2 diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8 index e209dc746065..60c7505449b2 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.8 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8 @@ -9,5 +9,5 @@ LICENSE=GPL-2 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=5a3e768febbbadcd5c8a4141dd49e11c diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 index 856cddfa19c3..14fb850841ad 100644 --- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 +++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 @@ -8,5 +8,5 @@ LICENSE=AGPL-3 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot SLOT=0 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=c3bb0edd6b01a31019cf5fd59e22122a diff --git a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 index f7f6aae8f8a1..9ecc57fe933d 100644 --- a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 +++ b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=finchtv SLOT=0 SRC_URI=http://www.geospiza.com/finchtv/download/programs/linux/finchtv_1_3_1.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=08355830f28d1052c2ab527b82a8dd68 diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.5.1 b/metadata/md5-cache/sci-biology/foldingathome-7.5.1 index 1b498b39e63a..14867165671a 100644 --- a/metadata/md5-cache/sci-biology/foldingathome-7.5.1 +++ b/metadata/md5-cache/sci-biology/foldingathome-7.5.1 @@ -9,5 +9,5 @@ RDEPEND=app-arch/bzip2 =dev-libs/openssl-1.0*:* sys-devel/gcc sys-libs/glibc sys RESTRICT=mirror bindist strip SLOT=0 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.5/fahclient_7.5.1-64bit-release.tar.bz2 -_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib b2f01ad412baf81650c23fcf0975fa33 systemd 71fd8d2065d102753fb9e4d20eaf3e9f toolchain-funcs f164325a2cdb5b3ea39311d483988861 user 8bd74731cafdcdad8f7a63637302e073 versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib b2f01ad412baf81650c23fcf0975fa33 systemd 71fd8d2065d102753fb9e4d20eaf3e9f toolchain-funcs b45201c4e6c096b98e250336954e64b9 user 8bd74731cafdcdad8f7a63637302e073 versionator 2352c3fc97241f6a02042773c8287748 _md5_=5969e756bd7905ba14bb72b83f427ee8 diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4 index ab6d93ca13ac..7b57f7aaa5ce 100644 --- a/metadata/md5-cache/sci-biology/gatk-2.4 +++ b/metadata/md5-cache/sci-biology/gatk-2.4 @@ -9,5 +9,5 @@ LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b77011b62e2053c646ad720defe6d921 versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b77011b62e2053c646ad720defe6d921 versionator 2352c3fc97241f6a02042773c8287748 _md5_=8afea474ed6c1f4ad5ac6d6a18c49542 diff --git a/metadata/md5-cache/sci-biology/gatk-9999 b/metadata/md5-cache/sci-biology/gatk-9999 index 26144030b796..dc0e8fc1b896 100644 --- a/metadata/md5-cache/sci-biology/gatk-9999 +++ b/metadata/md5-cache/sci-biology/gatk-9999 @@ -7,5 +7,5 @@ IUSE=elibc_FreeBSD elibc_FreeBSD LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=df4fa840e567320d0f100f0073200f23 diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1 index 19d446d56779..13e0669cff77 100644 --- a/metadata/md5-cache/sci-biology/gibbs-3.1 +++ b/metadata/md5-cache/sci-biology/gibbs-3.1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) SLOT=0 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e28918ff8ca46c8b8254e4e36f8d0bcf diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 b/metadata/md5-cache/sci-biology/glimmer-3.02-r3 index 25b9061d4155..fe00d80f5d9e 100644 --- a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 +++ b/metadata/md5-cache/sci-biology/glimmer-3.02-r3 @@ -7,5 +7,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh SLOT=0 SRC_URI=http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=94600a4de5a2dc02bc6652d958a2a034 diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b index 3b3aece913de..3378f25280b1 100644 --- a/metadata/md5-cache/sci-biology/glimmer-3.02b +++ b/metadata/md5-cache/sci-biology/glimmer-3.02b @@ -7,5 +7,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh sci-biology/elph SLOT=0 SRC_URI=https://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=6916d92c69198563f19b744f1e57dddc diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 index 0def84848f22..8afc6f340b49 100644 --- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 +++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=Artistic SLOT=0 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=addae30e588a0c7a05baea53d553af0f diff --git a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 index 0d5119c3c880..a9fa32aaaf3d 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev-java/commons-io:1 dev-java/protobuf-java:0 dev-java/fastutil:0 dev-java/log4j dev-java/jsap dev-java/commons-configuration dev-java/commons-math:2 cpp? ( ~sci-biology/goby-cpp-1.9.7.3 ) >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-deps.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=d8bbf59f45f0b32b55de88f3c5233883 diff --git a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 index c48968c2f719..ff2369cf41c4 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev-java/commons-io:1 dev-java/protobuf-java:0 dev-java/fastutil:0 dev-java/log4j dev-java/jsap dev-java/commons-configuration dev-java/commons-math:2 cpp? ( ~sci-biology/goby-cpp-1.9.8.1 ) >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-deps.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=d8bbf59f45f0b32b55de88f3c5233883 diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 index bd65516ac200..86b85087f659 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 +++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-cpp.zip -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=62b1fc794a90a87e0f80ab795108ee3c diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 index 5c6de16eca9f..13fe0a53962b 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 +++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-cpp.zip -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=2599766d541e65f4acfb94c4fa4e974e diff --git a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 index 33a08bef9266..529f42045e5c 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 +++ b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip https://dev.gentoo.org/~mgorny/dist/goby-cpp-2.0.1-files.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8282c100b202c470aedc98e37f6151ff diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1 index 5b1351f07d26..88deeb8db878 100644 --- a/metadata/md5-cache/sci-biology/iedera-1.05-r1 +++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=ce77e1e27bd52fed2fd2af52744d6288 diff --git a/metadata/md5-cache/sci-biology/kalign-2.03-r2 b/metadata/md5-cache/sci-biology/kalign-2.03-r2 index 8bb3a229b556..5634871f4c99 100644 --- a/metadata/md5-cache/sci-biology/kalign-2.03-r2 +++ b/metadata/md5-cache/sci-biology/kalign-2.03-r2 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://debian/pool/main/k/kalign/kalign_2.03.orig.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=175d26382226c7bed2b44be485b01d01 diff --git a/metadata/md5-cache/sci-biology/kallisto-0.43.1 b/metadata/md5-cache/sci-biology/kallisto-0.43.1 index c8c18bc72645..84b4162904f0 100644 --- a/metadata/md5-cache/sci-biology/kallisto-0.43.1 +++ b/metadata/md5-cache/sci-biology/kallisto-0.43.1 @@ -8,5 +8,5 @@ LICENSE=BSD RDEPEND=sci-libs/hdf5:= sys-libs/zlib:= SLOT=0 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz -> kallisto-0.43.1.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=b5fc562bf49e70db44b86bc5702ae9f2 diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999 index f4e93a1be1de..f536e564b491 100644 --- a/metadata/md5-cache/sci-biology/kallisto-9999 +++ b/metadata/md5-cache/sci-biology/kallisto-9999 @@ -6,5 +6,5 @@ HOMEPAGE=http://pachterlab.github.io/kallisto/ LICENSE=BSD RDEPEND=sci-libs/hdf5:= sys-libs/zlib:= SLOT=0 -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=b5fc562bf49e70db44b86bc5702ae9f2 diff --git a/metadata/md5-cache/sci-biology/lagan-2.0-r3 b/metadata/md5-cache/sci-biology/lagan-2.0-r3 index 2626f55d899a..a17a6edcee1c 100644 --- a/metadata/md5-cache/sci-biology/lagan-2.0-r3 +++ b/metadata/md5-cache/sci-biology/lagan-2.0-r3 @@ -7,5 +7,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=http://lagan.stanford.edu/lagan_web/lagan20.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=c9dbddd6a22f2e20ff25d0aa1e6f4280 diff --git a/metadata/md5-cache/sci-biology/last-230 b/metadata/md5-cache/sci-biology/last-230 index 1f9fc7cec5a1..fe477814de70 100644 --- a/metadata/md5-cache/sci-biology/last-230 +++ b/metadata/md5-cache/sci-biology/last-230 @@ -7,5 +7,5 @@ KEYWORDS=amd64 x86 LICENSE=GPL-3 SLOT=0 SRC_URI=http://last.cbrc.jp/archive/last-230.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=5da658e6779591b0d1b9ad3413a0e7b2 diff --git a/metadata/md5-cache/sci-biology/last-299-r1 b/metadata/md5-cache/sci-biology/last-299-r1 index 0f832a64795a..1eb04a36ab62 100644 --- a/metadata/md5-cache/sci-biology/last-299-r1 +++ b/metadata/md5-cache/sci-biology/last-299-r1 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://last.cbrc.jp/last-299.zip -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=ec5206661373a6ef6ad77450dfbdb915 diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 index 9c5d9cf373f7..20f130399cb6 100644 --- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 +++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=AGPL-3 SLOT=0/0 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=867c9b9e4eee26ad2a76ff6ff0594f52 diff --git a/metadata/md5-cache/sci-biology/mafft-7.050 b/metadata/md5-cache/sci-biology/mafft-7.050 index 7a2a4c568985..3cab0c90b7cd 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.050 +++ b/metadata/md5-cache/sci-biology/mafft-7.050 @@ -7,5 +7,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=BSD SLOT=0 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.050-without-extensions-src.tgz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=3195e77c5c792018208b65f5dbeab567 diff --git a/metadata/md5-cache/sci-biology/mafft-7.215 b/metadata/md5-cache/sci-biology/mafft-7.215 index 48db71d0d3be..255be4fb8d95 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.215 +++ b/metadata/md5-cache/sci-biology/mafft-7.215 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=BSD SLOT=0 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.215-without-extensions-src.tgz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=7b8b136195c000efff0407f671d57f19 diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305 index 4c1a01a2329e..6487fb98e244 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.305 +++ b/metadata/md5-cache/sci-biology/mafft-7.305 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=BSD SLOT=0 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=920a37021a0b392bb7315b63cf3de39d diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 index 801531228e3f..517fbd417dfd 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=39ffb0025210075a8d7d7f6f81f8da56 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 index f903fcd8dfbc..9f93ac695ab5 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=dee50558d10e75ff9e96f4c3f177c55f diff --git a/metadata/md5-cache/sci-biology/mcl-08.312 b/metadata/md5-cache/sci-biology/mcl-08.312 index cc4240fab7a9..f1d1fd59fef6 100644 --- a/metadata/md5-cache/sci-biology/mcl-08.312 +++ b/metadata/md5-cache/sci-biology/mcl-08.312 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-08-312.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/mcl-12.135 b/metadata/md5-cache/sci-biology/mcl-12.135 index efe471f6af3a..b1e9cf112ad2 100644 --- a/metadata/md5-cache/sci-biology/mcl-12.135 +++ b/metadata/md5-cache/sci-biology/mcl-12.135 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-12-135.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index ae13a7a06f5e..042b5c4dd727 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=3429c68609b6c70e047d577379f68f97 diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 index dc53fcbcb22e..3aacbe448340 100644 --- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 +++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 versionator 2352c3fc97241f6a02042773c8287748 _md5_=a4080439675628436c06de8db9f59c6e diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2 index 936ec8c8f3f9..a559021fa36c 100644 --- a/metadata/md5-cache/sci-biology/mira-4.0.2 +++ b/metadata/md5-cache/sci-biology/mira-4.0.2 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools SLOT=0 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4e9fc8a550640febbc0b71544c16618c diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30 index 3246e708e90b..12a732a4b847 100644 --- a/metadata/md5-cache/sci-biology/mosaik-2.2.30 +++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b77011b62e2053c646ad720defe6d921 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b77011b62e2053c646ad720defe6d921 _md5_=630686b35f8a549c580c5fd0e2cb02fc diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 index 414718ea2729..2c189fefc807 100644 --- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 +++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran SLOT=0 SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf fortran-2 f75a2d9321053acf424991e805f32ede ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf fortran-2 f75a2d9321053acf424991e805f32ede ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=17f8b3c73710bbb746fc4cbfcf78b85d diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 index 9330efe75bb7..81c77894285a 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/ncurses mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0 ) SLOT=0 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=a082c9b1f1b5f9fa9b85e23eb7009a6d diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 index d7a3b5b6065c..8e7a4e0ce7c2 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0= ) SLOT=0 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=a944448f568e57bb9f221cd1f437ab09 diff --git a/metadata/md5-cache/sci-biology/mummer-3.23 b/metadata/md5-cache/sci-biology/mummer-3.23 index a2acb0cfad54..6fff0c580afc 100644 --- a/metadata/md5-cache/sci-biology/mummer-3.23 +++ b/metadata/md5-cache/sci-biology/mummer-3.23 @@ -8,5 +8,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh dev-lang/perl SLOT=0 SRC_URI=mirror://sourceforge/mummer/MUMmer3.23.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=c256f298b416306c1be7005e7877f7b9 diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31 index 5d9aed02a7ac..c9f2db110eb6 100644 --- a/metadata/md5-cache/sci-biology/muscle-3.8.31 +++ b/metadata/md5-cache/sci-biology/muscle-3.8.31 @@ -7,5 +7,5 @@ LICENSE=public-domain RDEPEND=!sci-libs/libmuscle SLOT=0 SRC_URI=http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=500ff424aff8c56744362bc87a3ff285 diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 index 5cc4cc3839fe..bdb105877150 100644 --- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 +++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt ) SLOT=0 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=550e2f5b19e400b1ca82a7ba4f7bd44a diff --git a/metadata/md5-cache/sci-biology/njplot-2.3-r2 b/metadata/md5-cache/sci-biology/njplot-2.3-r2 index 689b440ee298..c88956da0fae 100644 --- a/metadata/md5-cache/sci-biology/njplot-2.3-r2 +++ b/metadata/md5-cache/sci-biology/njplot-2.3-r2 @@ -8,5 +8,5 @@ LICENSE=public-domain RDEPEND=sci-biology/ncbi-tools[X,static-libs] x11-libs/libXmu SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/njplot-2.3.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=c70b49c7f5e1a92f5169df372f9638c6 diff --git a/metadata/md5-cache/sci-biology/pals-1.0-r1 b/metadata/md5-cache/sci-biology/pals-1.0-r1 index dd27c45b978b..146150c9607b 100644 --- a/metadata/md5-cache/sci-biology/pals-1.0-r1 +++ b/metadata/md5-cache/sci-biology/pals-1.0-r1 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=public-domain SLOT=0 SRC_URI=http://www.drive5.com/pals/pals_source.tar.gz -> pals-1.0.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=b0df20d47905df6a290c5fe2f79fd48b diff --git a/metadata/md5-cache/sci-biology/paml-4.4c-r1 b/metadata/md5-cache/sci-biology/paml-4.4c-r1 index e6c827539a56..a2918b8d3cd3 100644 --- a/metadata/md5-cache/sci-biology/paml-4.4c-r1 +++ b/metadata/md5-cache/sci-biology/paml-4.4c-r1 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=free-noncomm SLOT=0 SRC_URI=http://abacus.gene.ucl.ac.uk/software/paml4.4c.tar.gz -_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 versionator 2352c3fc97241f6a02042773c8287748 _md5_=c46d709378282d4ccbb567aaa00ee01a diff --git a/metadata/md5-cache/sci-biology/phrap-1.080812-r2 b/metadata/md5-cache/sci-biology/phrap-1.080812-r2 index 20c5cc5e2ff0..128c41485631 100644 --- a/metadata/md5-cache/sci-biology/phrap-1.080812-r2 +++ b/metadata/md5-cache/sci-biology/phrap-1.080812-r2 @@ -8,5 +8,5 @@ RDEPEND=dev-lang/perl dev-perl/Tk RESTRICT=fetch SLOT=0 SRC_URI=phrap-1.080812-distrib.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=8f5aa73e6a49ffbd5804d4ddea05b2b8 diff --git a/metadata/md5-cache/sci-biology/phred-071220-r1 b/metadata/md5-cache/sci-biology/phred-071220-r1 index d520556416c9..64d80397242d 100644 --- a/metadata/md5-cache/sci-biology/phred-071220-r1 +++ b/metadata/md5-cache/sci-biology/phred-071220-r1 @@ -7,5 +7,5 @@ LICENSE=phrap RESTRICT=fetch SLOT=0 SRC_URI=phred-dist-071220.b-acd.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=6cb07f602eee34da61fd893818f30936 diff --git a/metadata/md5-cache/sci-biology/phylip-3.69-r1 b/metadata/md5-cache/sci-biology/phylip-3.69-r1 index 5941785f6f67..a53cb09c6e41 100644 --- a/metadata/md5-cache/sci-biology/phylip-3.69-r1 +++ b/metadata/md5-cache/sci-biology/phylip-3.69-r1 @@ -8,5 +8,5 @@ LICENSE=freedist RDEPEND=x11-libs/libXaw SLOT=0 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.69.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=d0432dd24ac4208e4dfcf91bea60d018 diff --git a/metadata/md5-cache/sci-biology/phylip-3.696-r1 b/metadata/md5-cache/sci-biology/phylip-3.696-r1 index e3d8be96c80a..4406460de32c 100644 --- a/metadata/md5-cache/sci-biology/phylip-3.696-r1 +++ b/metadata/md5-cache/sci-biology/phylip-3.696-r1 @@ -8,5 +8,5 @@ LICENSE=BSD-2 RDEPEND=x11-libs/libXaw SLOT=0 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.696.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=8b5da2d13bfc622e3156ee011204f899 diff --git a/metadata/md5-cache/sci-biology/phylip-3.696-r2 b/metadata/md5-cache/sci-biology/phylip-3.696-r2 index 325dd634b2d0..49d037c104fb 100644 --- a/metadata/md5-cache/sci-biology/phylip-3.696-r2 +++ b/metadata/md5-cache/sci-biology/phylip-3.696-r2 @@ -8,5 +8,5 @@ LICENSE=BSD-2 RDEPEND=x11-libs/libXaw !!dev-lang/elixir SLOT=0 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.696.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=69a57b901c6c154707c8c45f5ba39189 diff --git a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3 b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3 index 7c8731335e1f..549f3c909d36 100644 --- a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3 +++ b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3 @@ -6,5 +6,5 @@ KEYWORDS=amd64 ppc x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.lirmm.fr/~guindon/phyml_v2.4.5.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=fcca6fb4f9e88f5eb6a63a3ee0c79df7 diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103 index e0f47a206fa4..4edc8203b4a4 100644 --- a/metadata/md5-cache/sci-biology/picard-1.103 +++ b/metadata/md5-cache/sci-biology/picard-1.103 @@ -9,5 +9,5 @@ LICENSE=Apache-2.0 RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons-jexl:2 dev-java/ant-core:0 >=dev-java/java-config-2.2.0-r3 source? ( app-arch/zip ) SLOT=0 SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 99ea75c9f08fd38989951c554dfa56ea ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=09627e6bb74ee9997324bde01a56bcbd diff --git a/metadata/md5-cache/sci-biology/piler-1.0-r1 b/metadata/md5-cache/sci-biology/piler-1.0-r1 index cb4bc0822392..7a765f61c622 100644 --- a/metadata/md5-cache/sci-biology/piler-1.0-r1 +++ b/metadata/md5-cache/sci-biology/piler-1.0-r1 @@ -7,5 +7,5 @@ LICENSE=public-domain RDEPEND=|| ( sci-biology/muscle sci-libs/libmuscle ) sci-biology/pals SLOT=0 SRC_URI=http://www.drive5.com/piler/piler_source.tar.gz -> piler-1.0.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=7b5a6d618aac08240cf165a04509c319 diff --git a/metadata/md5-cache/sci-biology/pilercr-1.0-r1 b/metadata/md5-cache/sci-biology/pilercr-1.0-r1 index 199796eb5c74..fb58cad7f5fe 100644 --- a/metadata/md5-cache/sci-biology/pilercr-1.0-r1 +++ b/metadata/md5-cache/sci-biology/pilercr-1.0-r1 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=public-domain SLOT=0 SRC_URI=http://www.drive5.com/pilercr/pilercr1.06.tar.gz -> pilercr-1.0.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=d9f7901d3776c424cfb93782cc6ddafa diff --git a/metadata/md5-cache/sci-biology/plink-1.07-r1 b/metadata/md5-cache/sci-biology/plink-1.07-r1 index 8658c6c717da..0e03aa1ae6df 100644 --- a/metadata/md5-cache/sci-biology/plink-1.07-r1 +++ b/metadata/md5-cache/sci-biology/plink-1.07-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib lapack? ( virtual/lapack ) SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-1.07-src.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=b659cc5ab8af123ceaf15f1349214345 diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 index 5dea0bf0b4b5..2136f63d1f40 100644 --- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 +++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=570249dc23feeff7b47b3e81df358196 diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1 index 8358e2b4f9cd..433842def0d7 100644 --- a/metadata/md5-cache/sci-biology/poa-2-r1 +++ b/metadata/md5-cache/sci-biology/poa-2-r1 @@ -7,5 +7,5 @@ KEYWORDS=~x86 ~amd64 LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4f0b8d6c2192465644af4890a995d48a diff --git a/metadata/md5-cache/sci-biology/prank-140603 b/metadata/md5-cache/sci-biology/prank-140603 index f7948f7b436a..ddd31dd71cb1 100644 --- a/metadata/md5-cache/sci-biology/prank-140603 +++ b/metadata/md5-cache/sci-biology/prank-140603 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 SLOT=0 SRC_URI=http://wasabiapp.org/download/prank/prank.source.140603.tgz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=17023476000980284365a9c0ed04a6f0 diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.7 b/metadata/md5-cache/sci-biology/primer3-2.3.7 index 19c55d8fd04b..1c6f8c5f869c 100644 --- a/metadata/md5-cache/sci-biology/primer3-2.3.7 +++ b/metadata/md5-cache/sci-biology/primer3-2.3.7 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~spar LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=e79ee4774138e651c83467c2b2cb2926 diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1 index 5cf5702d70b6..eac9f890b097 100644 --- a/metadata/md5-cache/sci-biology/probcons-1.12-r1 +++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1 @@ -7,5 +7,5 @@ LICENSE=public-domain RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot SLOT=0 SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=19a24bd3c543d599d5b3392e66b7022e diff --git a/metadata/md5-cache/sci-biology/prodigal-2.6.3 b/metadata/md5-cache/sci-biology/prodigal-2.6.3 index 411775ecdd19..bffc387cc668 100644 --- a/metadata/md5-cache/sci-biology/prodigal-2.6.3 +++ b/metadata/md5-cache/sci-biology/prodigal-2.6.3 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 LICENSE=GPL-3 SLOT=0 SRC_URI=https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz -> prodigal-2.6.3.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=9cea3bcc55e864076d7e4b542f657f96 diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.39 b/metadata/md5-cache/sci-biology/profphd-1.0.39 index 46e8cf40e337..6b193546413f 100644 --- a/metadata/md5-cache/sci-biology/profphd-1.0.39 +++ b/metadata/md5-cache/sci-biology/profphd-1.0.39 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profphd-utils SLOT=0 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.39.tar.xz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8e866cc812e134cdc7a7837e5b60aa21 diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.40 b/metadata/md5-cache/sci-biology/profphd-1.0.40 index 76d47c8b6302..277aff5dfd87 100644 --- a/metadata/md5-cache/sci-biology/profphd-1.0.40 +++ b/metadata/md5-cache/sci-biology/profphd-1.0.40 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profphd-utils SLOT=0 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.40.tar.xz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=b641a6cfd444fa4b83d5963246948636 diff --git a/metadata/md5-cache/sci-biology/psipred-3.2.1 b/metadata/md5-cache/sci-biology/psipred-3.2.1 index 760d6260e1ae..131b1181b7d7 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.2.1 +++ b/metadata/md5-cache/sci-biology/psipred-3.2.1 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=sci-biology/ncbi-tools sci-biology/update-blastdb SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred321.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=3bfa6c8db72c665ebd3da2fcad0fa1b5 diff --git a/metadata/md5-cache/sci-biology/psipred-3.3 b/metadata/md5-cache/sci-biology/psipred-3.3 index 84317f25beb6..d20a0e31c6db 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.3 +++ b/metadata/md5-cache/sci-biology/psipred-3.3 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=sci-biology/ncbi-tools sci-biology/update-blastdb SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.3.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=26211f9b01966485ec2f6d801b58e61b diff --git a/metadata/md5-cache/sci-biology/psipred-3.4 b/metadata/md5-cache/sci-biology/psipred-3.4 index b55c712ec4b7..c8ad7e44624f 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.4 +++ b/metadata/md5-cache/sci-biology/psipred-3.4 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=app-shells/tcsh sci-biology/ncbi-tools sci-biology/update-blastdb SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.4.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=aa07fe12602b4a284c9d8734857542e5 diff --git a/metadata/md5-cache/sci-biology/psipred-3.5 b/metadata/md5-cache/sci-biology/psipred-3.5 index d853f57da198..78d46b275394 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.5 +++ b/metadata/md5-cache/sci-biology/psipred-3.5 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=app-shells/tcsh sci-biology/ncbi-tools sci-biology/update-blastdb SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.5.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=aa07fe12602b4a284c9d8734857542e5 diff --git a/metadata/md5-cache/sci-biology/pysam-0.12.0.1 b/metadata/md5-cache/sci-biology/pysam-0.12.0.1 index 223753a78d47..258873b5c6f0 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.12.0.1 +++ b/metadata/md5-cache/sci-biology/pysam-0.12.0.1 @@ -10,5 +10,5 @@ RDEPEND==sci-libs/htslib-1.5*:= python_targets_python2_7? ( >=dev-lang/python-2. REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/p/pysam/pysam-0.12.0.1.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=c02049dd445007999f7534a8e5d17656 diff --git a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 index 3b40c22ce92c..6e4d7d2fad80 100644 --- a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 +++ b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl sci-biology/hmmer:2 SLOT=0 SRC_URI=mirror://gentoo/qrna-2.0.3c.tar.bz2 -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=0fc8dac0f54d22c60da996470b3b33ee diff --git a/metadata/md5-cache/sci-biology/raxml-7.2.6 b/metadata/md5-cache/sci-biology/raxml-7.2.6 index 93cbf943bd9b..d063c845ca1a 100644 --- a/metadata/md5-cache/sci-biology/raxml-7.2.6 +++ b/metadata/md5-cache/sci-biology/raxml-7.2.6 @@ -8,5 +8,5 @@ LICENSE=GPL-2 REQUIRED_USE=cpu_flags_x86_sse3 SLOT=0 SRC_URI=http://wwwkramer.in.tum.de/exelixis/software/RAxML-7.2.6.tar.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=f2b8e0b4e5701d9b20bcbf9151c9b868 diff --git a/metadata/md5-cache/sci-biology/recon-1.08 b/metadata/md5-cache/sci-biology/recon-1.08 index 79df135c2107..485903ea19d7 100644 --- a/metadata/md5-cache/sci-biology/recon-1.08 +++ b/metadata/md5-cache/sci-biology/recon-1.08 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=http://www.repeatmasker.org/RECON-1.08.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=2ddd537d912c7c88b6f0b0d203a51613 diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1 index 4acd763502a9..535088d4b4c7 100644 --- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 +++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1 @@ -8,5 +8,5 @@ LICENSE=OSL-2.1 RDEPEND=dev-libs/boost SLOT=0 SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz https://dev.gentoo.org/~mgorny/dist/rmblast-1.2-gcc47.patch.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1283e94bf3a231a794a498d2769aaa7d diff --git a/metadata/md5-cache/sci-biology/rnaview-20040713-r4 b/metadata/md5-cache/sci-biology/rnaview-20040713-r4 index 9fa64f93911f..ee25f532a0fb 100644 --- a/metadata/md5-cache/sci-biology/rnaview-20040713-r4 +++ b/metadata/md5-cache/sci-biology/rnaview-20040713-r4 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=public-domain SLOT=0 SRC_URI=mirror://gentoo/rnaview-20040713.tar.bz2 -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=788c156d45287bef4f6aa876055bde4c diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 index e1bfaba8d7af..c0f34952f5ca 100644 --- a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 +++ b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0.1-legacy SRC_URI=https://github.com/samtools/samtools/archive/0.1.20.tar.gz -> samtools-0.1.20.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=fa48f0b2be780a9264eb9d727ec53335 diff --git a/metadata/md5-cache/sci-biology/samtools-1.5 b/metadata/md5-cache/sci-biology/samtools-1.5 index 1049f705238c..0da561276241 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.5 +++ b/metadata/md5-cache/sci-biology/samtools-1.5 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib py REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.5.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=8d92b4a814f62eab87bac2be22c2470c diff --git a/metadata/md5-cache/sci-biology/samtools-1.9 b/metadata/md5-cache/sci-biology/samtools-1.9 index 9a710e3f3b9a..bd581da13dab 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.9 +++ b/metadata/md5-cache/sci-biology/samtools-1.9 @@ -11,5 +11,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.9* sys-libs/ncurses:0= sys-libs/zlib:= REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.9.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=7e8913a97cbbcf5ee0158a89a42fa92c diff --git a/metadata/md5-cache/sci-biology/seaview-4.3.5 b/metadata/md5-cache/sci-biology/seaview-4.3.5 index fa1b412d6072..83f87a8af5fa 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.3.5 +++ b/metadata/md5-cache/sci-biology/seaview-4.3.5 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.5.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=38cc02682d853c813df2b6e81cbb51c5 diff --git a/metadata/md5-cache/sci-biology/seaview-4.5.4 b/metadata/md5-cache/sci-biology/seaview-4.5.4 index ce4908e85f86..a8b010fd6aab 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.5.4 +++ b/metadata/md5-cache/sci-biology/seaview-4.5.4 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.5.4.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=38cc02682d853c813df2b6e81cbb51c5 diff --git a/metadata/md5-cache/sci-biology/seaview-4.6 b/metadata/md5-cache/sci-biology/seaview-4.6 index 35a85ebbe4cc..fdf333ca054a 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.6 +++ b/metadata/md5-cache/sci-biology/seaview-4.6 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw:2 || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1a6723f1ab0e67cc0d63dd54a902900f diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 index 2ffd545ef6d1..7d66a6a79e80 100644 --- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 +++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=1.4 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=1b7be060ecec73f1e66596a71b90a92a diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 index 5380ef18e131..604879294b49 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 +++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=aaf78a04252c5e6c2b92b04c7211b73c diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0 b/metadata/md5-cache/sci-biology/seqan-2.4.0 index 5e62adfe61c4..1f848eb0e8c4 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.4.0 +++ b/metadata/md5-cache/sci-biology/seqan-2.4.0 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/s REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=ca34cde2b2fc2f8692469a016bc077f6 diff --git a/metadata/md5-cache/sci-biology/seqan-9999 b/metadata/md5-cache/sci-biology/seqan-9999 index 3c3b34555c9a..c7d4096c0b4d 100644 --- a/metadata/md5-cache/sci-biology/seqan-9999 +++ b/metadata/md5-cache/sci-biology/seqan-9999 @@ -8,5 +8,5 @@ LICENSE=BSD GPL-3 RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=954c2a9b05e60f6a61eb27c1cc720117 diff --git a/metadata/md5-cache/sci-biology/shrimp-2.0.1 b/metadata/md5-cache/sci-biology/shrimp-2.0.1 index 2cda27a6919e..d5fc6941cc35 100644 --- a/metadata/md5-cache/sci-biology/shrimp-2.0.1 +++ b/metadata/md5-cache/sci-biology/shrimp-2.0.1 @@ -9,5 +9,5 @@ LICENSE=shrimp RDEPEND=!sci-biology/emboss !sci-mathematics/cado-nfs SLOT=0 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_0_1.src.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=33caa30e4cdcb3e86f4b1be8c6c30c46 diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3 index 0952cda7d2bd..fe6294e56aef 100644 --- a/metadata/md5-cache/sci-biology/shrimp-2.2.3 +++ b/metadata/md5-cache/sci-biology/shrimp-2.2.3 @@ -10,5 +10,5 @@ RDEPEND=!sci-mathematics/cado-nfs python_targets_python2_7? ( >=dev-lang/python- REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=98a7a2b9765ad5e245b1b7b9be67060b diff --git a/metadata/md5-cache/sci-biology/sibsim4-0.20 b/metadata/md5-cache/sci-biology/sibsim4-0.20 index cdfe480a291e..a0f4c8f977f9 100644 --- a/metadata/md5-cache/sci-biology/sibsim4-0.20 +++ b/metadata/md5-cache/sci-biology/sibsim4-0.20 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/sibsim4/SIBsim4-0.20.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=84a29c8972011ec4b86f3c8235a7b5d2 diff --git a/metadata/md5-cache/sci-biology/sim4-20030921-r2 b/metadata/md5-cache/sci-biology/sim4-20030921-r2 index 37f49d510613..fa9adaefcdfa 100644 --- a/metadata/md5-cache/sci-biology/sim4-20030921-r2 +++ b/metadata/md5-cache/sci-biology/sim4-20030921-r2 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~ppc ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=fca00baca723bafd7976eff8dccc5c26 diff --git a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 index b9363001067c..735f01ec2cf3 100644 --- a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 +++ b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=dev-libs/boost:= SLOT=0 SRC_URI=http://www.birc.au.dk/~mailund/SNPFile/download/snpfile-2.0.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=7c64014825a157024d03614c037abcfc diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1 index 7485af5b6dbe..854b84d39ba6 100644 --- a/metadata/md5-cache/sci-biology/stride-20011129-r1 +++ b/metadata/md5-cache/sci-biology/stride-20011129-r1 @@ -7,5 +7,5 @@ LICENSE=STRIDE RESTRICT=mirror bindist SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz https://dev.gentoo.org/~jlec/distfiles/stride-20060723-update.patch.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d73db26f06440dc2c2a1e25befe5d490 diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r2 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r2 index 4fdbb5ce41b7..929529abe052 100644 --- a/metadata/md5-cache/sci-biology/t-coffee-11.00-r2 +++ b/metadata/md5-cache/sci-biology/t-coffee-11.00-r2 @@ -7,5 +7,5 @@ LICENSE=GPL-2 RDEPEND=sci-biology/clustalw sci-chemistry/tm-align SLOT=0 SRC_URI=http://www.tcoffee.org/Packages/Beta/Latest/T-COFFEE_distribution_Version_11.00.4466924.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=5c54b109c5b8bef93adbc5f99ddd7114 diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 index b31ac9d23f64..bb6816ffee37 100644 --- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 +++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=efee8069c83c578acac8e57b429ad985 diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2 index 6eec1cb30719..79800d585804 100644 --- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 +++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2 @@ -10,5 +10,5 @@ RDEPEND=mpi? ( virtual/mpi ) RESTRICT=test SLOT=0 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=6f933fde60eb23f0e50fbe5e137bbc7e diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 index 3d49486a44e8..98efa83f25d1 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=x11-libs/wxGTK:3.0[X] SLOT=0 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wxwidgets ed63935305b6de2210ae97a407719d89 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wxwidgets ed63935305b6de2210ae97a407719d89 _md5_=ce129f3e61a849cfd3654e5a9fa4b17a diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31 b/metadata/md5-cache/sci-biology/trnascan-se-1.31 index 072503a6bf02..6dc3e157a194 100644 --- a/metadata/md5-cache/sci-biology/trnascan-se-1.31 +++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=3f4bcdf31fe276f90a95e2f4b311deae diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40 index c62c7d5b69c9..629decf1cd15 100644 --- a/metadata/md5-cache/sci-biology/uchime-4.2.40 +++ b/metadata/md5-cache/sci-biology/uchime-4.2.40 @@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux LICENSE=public-domain SLOT=0 SRC_URI=http://drive5.com/uchime/uchime4.2.40_src.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=6adcbb8c658bdc3c40f797c61f5c58b0 diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 index 904a818db46f..520e61c903b2 100644 --- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 +++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 @@ -10,5 +10,5 @@ RDEPEND=dev-libs/openssl:0= media-libs/libpng:0= !<sci-biology/ucsc-genome-brows REQUIRED_USE=server? ( mysql ) SLOT=0 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12 _md5_=ecc35fd7ec196a9e5cce4c0c51af618f diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1 index adfd7e33eb7a..6034471c62f9 100644 --- a/metadata/md5-cache/sci-biology/unafold-3.8-r1 +++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=unafold SLOT=0 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=f6e357557efc2f86eab0adadd32142ce diff --git a/metadata/md5-cache/sci-biology/vaal-46233-r2 b/metadata/md5-cache/sci-biology/vaal-46233-r2 index 6e30ba3365b6..4458bf6475c8 100644 --- a/metadata/md5-cache/sci-biology/vaal-46233-r2 +++ b/metadata/md5-cache/sci-biology/vaal-46233-r2 @@ -9,5 +9,5 @@ LICENSE=Whitehead-MIT RDEPEND=!sci-biology/allpaths !sci-biology/allpathslg SLOT=0 SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc https://dev.gentoo.org/~mgorny/dist/vaal-46233_remove-namespace-std.patch.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=7fc8bec051332364e3d7f84f905d6f98 diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14 index 216dcdeb2cc6..4e8fff437b1d 100644 --- a/metadata/md5-cache/sci-biology/vcftools-0.1.14 +++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14 @@ -9,5 +9,5 @@ LICENSE=LGPL-3 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) SLOT=0 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=c40169dc993f3444a3e2f41ad69a920d diff --git a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 index 6ed96263cbbb..ac15496f8640 100644 --- a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 +++ b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.0.18.tgz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=81d9bd82f6f3df3f4b73fa7d65b5d95e diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10 index 1943429a363e..282dc8b16767 100644 --- a/metadata/md5-cache/sci-biology/velvet-1.2.10 +++ b/metadata/md5-cache/sci-biology/velvet-1.2.10 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=420632435bf1efe77241192fff993a20 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 index f44743a5fbf7..9c3c2f307299 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=1e58c830b49ced05ae9960fcc2dead13 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 index b3ffb2390019..39487f5cd7d0 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=b2a6486af275e75c6365ab7eeba1e0bd diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 index 2ccafb74272d..5310615351e6 100644 --- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 +++ b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=net-libs/libtirpc x11-libs/libXt !x11-terms/terminator app-shells/tcsh dev-perl/Log-Log4perl SLOT=0 SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=cb4182fc2947f2a3efa19db296a6a76f diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha index fca0597450c2..f02c2b4a6dbd 100644 --- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha +++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha @@ -9,5 +9,5 @@ LICENSE=BSD RDEPEND=~sci-biology/hmmer-2.3.2 SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz https://dev.gentoo.org/~mgorny/dist/wise-2.4.0_alpha-patchset.tar.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=5089373e8fa38f080134e22ddf59264c diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2 index f2d6777d6102..18808f1c80d8 100644 --- a/metadata/md5-cache/sci-biology/yass-1.14-r2 +++ b/metadata/md5-cache/sci-biology/yass-1.14-r2 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dmalloc? ( dev-libs/dmalloc ) SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs f164325a2cdb5b3ea39311d483988861 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3 |