diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
21 files changed, 29 insertions, 45 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999 index 7d6af0151376..3ba2f2bcf70d 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-9999 +++ b/metadata/md5-cache/sci-biology/HTSeq-9999 @@ -5,8 +5,9 @@ EAPI=6 HOMEPAGE=https://htseq.readthedocs.io/ IUSE=python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 LICENSE=GPL-3+ +PROPERTIES=live RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 -_eclasses_=distutils-r1 9838160d624a44b2d56d1266a69fd473 git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 9838160d624a44b2d56d1266a69fd473 git-r3 562b380fc59ae6a8622171d0acb777d1 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=41aaefa741e4fde04bbda02ac66eba05 diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex b8b9fd1b1342..97a21f45548e 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 deleted file mode 100644 index ad3079574158..000000000000 --- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 +++ /dev/null @@ -1,12 +0,0 @@ -DEFINED_PHASES=prepare pretend setup -DEPEND=!sci-biology/allpaths !sci-biology/vaal dev-libs/boost:= >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=De novo assembly of whole-genome shotgun microreads -EAPI=6 -HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd -KEYWORDS=~amd64 -LICENSE=MIT -RDEPEND=!sci-biology/allpaths !sci-biology/vaal -SLOT=0 -SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf -_md5_=7993b2efe97dac631506fe76aa46db2b diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999 index 7c7d0adce244..02fb5c06c2fc 100644 --- a/metadata/md5-cache/sci-biology/bamtools-9999 +++ b/metadata/md5-cache/sci-biology/bamtools-9999 @@ -6,7 +6,8 @@ EAPI=7 HOMEPAGE=https://github.com/pezmaster31/bamtools IUSE=static-libs LICENSE=MIT +PROPERTIES=live RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/9999 -_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca git-r3 562b380fc59ae6a8622171d0acb777d1 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=bddaa64daf006313f77c6152fbc41a8b diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0 index 7552759e121d..05300af02f4d 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.26.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz https://dev.gentoo.org/~mgorny/dist/bedtools-2.26.0-fix-buildsystem.patch.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 b5f01473006ccc2cd78bc3dab20fced4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=93c7c9cb11de4ad32cab7183dc2e6512 diff --git a/metadata/md5-cache/sci-biology/bioperl-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-9999-r1 index 7e6e10a22cc2..fea4ab3dbaab 100644 --- a/metadata/md5-cache/sci-biology/bioperl-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-9999-r1 @@ -6,7 +6,8 @@ HOMEPAGE=http://www.bioperl.org/ IUSE=-minimal graphviz +db +network +run LICENSE=Artistic GPL-2 PDEPEND=!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) db? ( >=sci-biology/bioperl-db-9999 ) network? ( >=sci-biology/bioperl-network-9999 ) run? ( >=sci-biology/bioperl-run-9999 ) +PROPERTIES=live RDEPEND=dev-perl/Data-Stag dev-perl/libwww-perl !minimal? ( dev-perl/Ace dev-perl/Bio-ASN1-EntrezGene dev-perl/Spreadsheet-ParseExcel dev-perl/Spreadsheet-WriteExcel >=dev-perl/XML-SAX-0.15 dev-perl/Graph dev-perl/SOAP-Lite dev-perl/Array-Compare dev-perl/SVG dev-perl/XML-Simple dev-perl/XML-Parser dev-perl/XML-Twig >=dev-perl/HTML-Parser-3.60 >=dev-perl/XML-Writer-0.4 dev-perl/Clone dev-perl/XML-DOM dev-perl/Set-Scalar dev-perl/XML-XPath dev-perl/XML-DOM-XPath dev-perl/Algorithm-Munkres dev-perl/Data-Stag dev-perl/Math-Random dev-perl/PostScript dev-perl/Convert-Binary-C dev-perl/SVG-Graph ) graphviz? ( dev-perl/GraphViz ) dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 3aabf18eba60687bbe6855eba271f688 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=210415961127105f0fc625670ba9e423 diff --git a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 index 633fca7e9e89..64f58d96c106 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 @@ -4,7 +4,8 @@ DESCRIPTION=Perl tools for bioinformatics - Perl API that accesses the BioSQL sc EAPI=5 HOMEPAGE=http://www.bioperl.org/ LICENSE=Artistic GPL-2 +PROPERTIES=live RDEPEND=>=sci-biology/bioperl-9999 dev-perl/DBI sci-biology/biosql dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 3aabf18eba60687bbe6855eba271f688 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=fd4229be06b3975302e9e37ca35601d2 diff --git a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 index dd1f4980b289..7678d65824b7 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 @@ -5,7 +5,8 @@ EAPI=5 HOMEPAGE=http://www.bioperl.org/ IUSE=test LICENSE=Artistic GPL-2 +PROPERTIES=live RDEPEND=>=sci-biology/bioperl-9999 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 3aabf18eba60687bbe6855eba271f688 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=025cd5fa89be402f3296160dbf755c8b diff --git a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 index 638bb0dd840f..8dd8df2a0f9a 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 @@ -5,8 +5,9 @@ EAPI=5 HOMEPAGE=http://www.bioperl.org/ IUSE=-minimal test LICENSE=Artistic GPL-2 +PROPERTIES=live RDEPEND=>=sci-biology/bioperl-9999 !minimal? ( dev-perl/Algorithm-Diff dev-perl/XML-Twig dev-perl/IO-String dev-perl/IPC-Run ) dev-lang/perl:=[-build(-)] RESTRICT=test SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 3aabf18eba60687bbe6855eba271f688 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=26abe4f8477c1a1c22bd8515484ce1c1 diff --git a/metadata/md5-cache/sci-biology/bioruby-1.5.1 b/metadata/md5-cache/sci-biology/bioruby-1.5.1 index cdef61e37202..a7394e96a336 100644 --- a/metadata/md5-cache/sci-biology/bioruby-1.5.1 +++ b/metadata/md5-cache/sci-biology/bioruby-1.5.1 @@ -3,12 +3,12 @@ DEPEND=test? ( ruby_targets_ruby24? ( dev-ruby/libxml[ruby_targets_ruby24] ) ) r DESCRIPTION=An integrated environment for bioinformatics using the Ruby language EAPI=6 HOMEPAGE=http://bioruby.org/ -IUSE=test elibc_FreeBSD ruby_targets_ruby24 doc test test +IUSE=test ruby_targets_ruby24 doc test test KEYWORDS=amd64 ~ppc x86 LICENSE=Ruby RDEPEND=ruby_targets_ruby24? ( dev-ruby/libxml[ruby_targets_ruby24] ) ruby_targets_ruby24? ( dev-lang/ruby:2.4 ) ruby_targets_ruby24? ( virtual/rubygems[ruby_targets_ruby24] ) REQUIRED_USE=|| ( ruby_targets_ruby24 ) SLOT=0 SRC_URI=mirror://rubygems/bio-1.5.1.gem -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem 4044516b167f460104703fee4a3c7f5f ruby-ng 62b5b5e0972da970419ae052ea15b9ed ruby-utils 10cec86289e60f4b0d731b2e4b545e5d toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 1d91b03d42ab6308b5f4f6b598ed110e ruby-fakegem f2b7caee23dbd528a62d0839d8c26c34 ruby-ng a28f4a400304e633468f10ad1b9e2f6e ruby-utils 5b782a86f95c84466cdb53f8c8a8be37 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 _md5_=2aecf9a558ab9d1f3e8760530ccd8e56 diff --git a/metadata/md5-cache/sci-biology/bioruby-1.5.2 b/metadata/md5-cache/sci-biology/bioruby-1.5.2 index e4349895f95c..70e5e90dab32 100644 --- a/metadata/md5-cache/sci-biology/bioruby-1.5.2 +++ b/metadata/md5-cache/sci-biology/bioruby-1.5.2 @@ -3,12 +3,12 @@ DEPEND=test? ( ruby_targets_ruby24? ( dev-ruby/libxml[ruby_targets_ruby24] ) ) r DESCRIPTION=An integrated environment for bioinformatics using the Ruby language EAPI=6 HOMEPAGE=http://bioruby.org/ -IUSE=test elibc_FreeBSD ruby_targets_ruby24 doc test test +IUSE=test ruby_targets_ruby24 doc test test KEYWORDS=~amd64 ~ppc ~x86 LICENSE=Ruby RDEPEND=ruby_targets_ruby24? ( dev-ruby/libxml[ruby_targets_ruby24] ) ruby_targets_ruby24? ( dev-lang/ruby:2.4 ) ruby_targets_ruby24? ( virtual/rubygems[ruby_targets_ruby24] ) REQUIRED_USE=|| ( ruby_targets_ruby24 ) SLOT=0 SRC_URI=mirror://rubygems/bio-1.5.2.gem -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem 4044516b167f460104703fee4a3c7f5f ruby-ng 62b5b5e0972da970419ae052ea15b9ed ruby-utils 10cec86289e60f4b0d731b2e4b545e5d toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 1d91b03d42ab6308b5f4f6b598ed110e ruby-fakegem f2b7caee23dbd528a62d0839d8c26c34 ruby-ng a28f4a400304e633468f10ad1b9e2f6e ruby-utils 5b782a86f95c84466cdb53f8c8a8be37 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 _md5_=b0f1536271f03758d5e11673ecc9bc58 diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.5.1 b/metadata/md5-cache/sci-biology/foldingathome-7.5.1 index a8f42dda7c29..58a40a4e7a43 100644 --- a/metadata/md5-cache/sci-biology/foldingathome-7.5.1 +++ b/metadata/md5-cache/sci-biology/foldingathome-7.5.1 @@ -9,5 +9,5 @@ RDEPEND=app-arch/bzip2 || ( dev-libs/openssl-compat:1.0.0 =dev-libs/openssl-1.0* RESTRICT=mirror bindist strip SLOT=0 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.5/fahclient_7.5.1-64bit-release.tar.bz2 -_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 1d91b03d42ab6308b5f4f6b598ed110e systemd 71fd8d2065d102753fb9e4d20eaf3e9f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 user e68863263b1e8611dacf381bec5c8b2b versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 1d91b03d42ab6308b5f4f6b598ed110e systemd 71fd8d2065d102753fb9e4d20eaf3e9f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 user f8dcb46ee7b0bcdec51dac1ef4bfdfc9 versionator 2352c3fc97241f6a02042773c8287748 _md5_=a1c1420f8b9044694473f469d5e750af diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4 index ae287bef8306..442819a93907 100644 --- a/metadata/md5-cache/sci-biology/gatk-2.4 +++ b/metadata/md5-cache/sci-biology/gatk-2.4 @@ -9,5 +9,5 @@ LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b77011b62e2053c646ad720defe6d921 versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b1abf460a493fc59ebb25de0df3f09dd versionator 2352c3fc97241f6a02042773c8287748 _md5_=8afea474ed6c1f4ad5ac6d6a18c49542 diff --git a/metadata/md5-cache/sci-biology/gatk-9999 b/metadata/md5-cache/sci-biology/gatk-9999 index 88cb2a2e3fed..6984f360630e 100644 --- a/metadata/md5-cache/sci-biology/gatk-9999 +++ b/metadata/md5-cache/sci-biology/gatk-9999 @@ -5,7 +5,8 @@ EAPI=5 HOMEPAGE=http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit IUSE=elibc_FreeBSD elibc_FreeBSD LICENSE=MIT +PROPERTIES=live RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 249c1a0962573f4ce2c28f0d5b6b35d4 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d eapi7-ver 756b3f27d8e46131d5cf3c51bd876446 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 git-2 3aabf18eba60687bbe6855eba271f688 java-ant-2 6505e8068920164179b7e3926220c89f java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 dd352559d0e143500ec878acc74da909 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 _md5_=df4fa840e567320d0f100f0073200f23 diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999 index 586b11d88f39..e86e601a97bd 100644 --- a/metadata/md5-cache/sci-biology/kallisto-9999 +++ b/metadata/md5-cache/sci-biology/kallisto-9999 @@ -4,7 +4,8 @@ DESCRIPTION=Near-optimal RNA-Seq quantification EAPI=6 HOMEPAGE=http://pachterlab.github.io/kallisto/ LICENSE=BSD +PROPERTIES=live RDEPEND=sci-libs/hdf5:= sys-libs/zlib:= SLOT=0 -_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca git-r3 562b380fc59ae6a8622171d0acb777d1 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=b5fc562bf49e70db44b86bc5702ae9f2 diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30 index e5e0ac5a4c77..bb1702b56f39 100644 --- a/metadata/md5-cache/sci-biology/mosaik-2.2.30 +++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b77011b62e2053c646ad720defe6d921 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot b1abf460a493fc59ebb25de0df3f09dd _md5_=630686b35f8a549c580c5fd0e2cb02fc diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 index e4a404f27497..4183b487cd3f 100644 --- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 +++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=1.4 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz -_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 b5f01473006ccc2cd78bc3dab20fced4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=1b7be060ecec73f1e66596a71b90a92a diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 index ca6ad8833d41..06c7db116a0b 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 +++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz -_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 b5f01473006ccc2cd78bc3dab20fced4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=aaf78a04252c5e6c2b92b04c7211b73c diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0 b/metadata/md5-cache/sci-biology/seqan-2.4.0 index a48ad23d5d8f..6587240cfb43 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.4.0 +++ b/metadata/md5-cache/sci-biology/seqan-2.4.0 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/s REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz -_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 b5f01473006ccc2cd78bc3dab20fced4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=ca34cde2b2fc2f8692469a016bc077f6 diff --git a/metadata/md5-cache/sci-biology/seqan-9999 b/metadata/md5-cache/sci-biology/seqan-9999 index fba4b5da0588..cde6f392b2d7 100644 --- a/metadata/md5-cache/sci-biology/seqan-9999 +++ b/metadata/md5-cache/sci-biology/seqan-9999 @@ -5,8 +5,9 @@ EAPI=6 HOMEPAGE=http://www.seqan.de/ IUSE=cpu_flags_x86_sse4_1 doc tools LICENSE=BSD GPL-3 +PROPERTIES=live RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 -_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils 91d6ef31dc426240577497cacbf2508c desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 7ba73aee7fe4462b3a745e3645ab92ca git-r3 562b380fc59ae6a8622171d0acb777d1 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 b5f01473006ccc2cd78bc3dab20fced4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=954c2a9b05e60f6a61eb27c1cc720117 diff --git a/metadata/md5-cache/sci-biology/vaal-46233-r2 b/metadata/md5-cache/sci-biology/vaal-46233-r2 deleted file mode 100644 index f41c8e8aea23..000000000000 --- a/metadata/md5-cache/sci-biology/vaal-46233-r2 +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=configure prepare -DEPEND=!sci-biology/allpaths !sci-biology/allpathslg dev-libs/boost >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=Algorithm for detecting SNPs, indels, and other polymorphisms -EAPI=6 -HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd/ -IUSE=openmp -KEYWORDS=amd64 -LICENSE=Whitehead-MIT -RDEPEND=!sci-biology/allpaths !sci-biology/allpathslg -SLOT=0 -SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc https://dev.gentoo.org/~mgorny/dist/vaal-46233_remove-namespace-std.patch.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib 1d91b03d42ab6308b5f4f6b598ed110e toolchain-funcs a3a237ef6c0c58546bf23b2c382f9e56 -_md5_=7fc8bec051332364e3d7f84f905d6f98 |