7 files changed, 20 insertions, 32 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 7be5031611f0..b75d6299442d 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
index 7d4580f5c803..45424e1f85bb 100644
--- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2
+++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
@@ -9,4 +9,4 @@ RDEPEND=!sci-biology/allpaths !sci-biology/vaal
 SLOT=0
 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2
 _eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=8c8bda5ab2704db1e969660ebe5882c1
+_md5_=7993b2efe97dac631506fe76aa46db2b
diff --git a/metadata/md5-cache/sci-biology/express-0.9.5-r1 b/metadata/md5-cache/sci-biology/express-0.9.5-r1
deleted file mode 100644
index ca344e738f87..000000000000
--- a/metadata/md5-cache/sci-biology/express-0.9.5-r1
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools sys-devel/make >=dev-util/cmake-3.9.6
-DESCRIPTION=Streaming RNA-Seq Analysis
-EAPI=5
-HOMEPAGE=http://bio.math.berkeley.edu/eXpress/
-KEYWORDS=~amd64 ~x86
-LICENSE=Artistic
-RDEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools
-SLOT=0
-SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-0.9.5/express-0.9.5-src.tgz
-_eclasses_=cmake-utils	f0bc1c175684130a76ab6c17f575d820	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=6d15a446bfc7659cceaabe3567001583
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index d43cad983014..3b93b4074bc8 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -1,12 +1,12 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sys-libs/zlib sci-biology/bamtools sys-devel/make >=dev-util/cmake-3.9.6
+DEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Streaming RNA-Seq Analysis
-EAPI=5
+EAPI=6
 HOMEPAGE=http://bio.math.berkeley.edu/eXpress/
 KEYWORDS=~amd64 ~x86
 LICENSE=Artistic
-RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sys-libs/zlib sci-biology/bamtools
+RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
 SLOT=0
 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
 _eclasses_=cmake-utils	f0bc1c175684130a76ab6c17f575d820	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=a2d4ea80b964801c45f62ae737430d6d
+_md5_=10c478f1e1a9a533322963cf4c2e92f8
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.7 b/metadata/md5-cache/sci-biology/fasttree-2.1.7
deleted file mode 100644
index deeb21277763..000000000000
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.7
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=sys-devel/make >=dev-util/cmake-3.9.6
-DESCRIPTION=Fast inference of approximately-maximum-likelihood phylogenetic trees
-EAPI=5
-HOMEPAGE=http://www.microbesonline.org/fasttree/
-IUSE=double-precision openmp cpu_flags_x86_sse3
-KEYWORDS=amd64 x86
-LICENSE=GPL-2
-REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
-SLOT=0
-SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.7.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.7.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.7.tar.gz
-_eclasses_=cmake-utils	f0bc1c175684130a76ab6c17f575d820	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=20d72299931c8f8e092006a9b668182c
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8
index 3fe280d77e7f..d7463a242196 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.8
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8
@@ -1,7 +1,7 @@
 DEFINED_PHASES=compile configure install prepare test unpack
 DEPEND=sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Fast inference of approximately-maximum-likelihood phylogenetic trees
-EAPI=5
+EAPI=6
 HOMEPAGE=http://www.microbesonline.org/fasttree/
 IUSE=double-precision openmp cpu_flags_x86_sse3
 KEYWORDS=~amd64 ~x86
@@ -10,4 +10,4 @@ REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz
 _eclasses_=cmake-utils	f0bc1c175684130a76ab6c17f575d820	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=f2b648d93a4c0ca58285574958cde15a
+_md5_=5a3e768febbbadcd5c8a4141dd49e11c
diff --git a/metadata/md5-cache/sci-biology/rebase-1810 b/metadata/md5-cache/sci-biology/rebase-1810
new file mode 100644
index 000000000000..377675de0e57
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/rebase-1810
@@ -0,0 +1,13 @@
+DEFINED_PHASES=compile install
+DEPEND=emboss? ( >=sci-biology/emboss-5.0.0 )
+DESCRIPTION=A restriction enzyme database
+EAPI=6
+HOMEPAGE=http://rebase.neb.com
+IUSE=emboss minimal
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris
+LICENSE=public-domain
+RDEPEND=emboss? ( >=sci-biology/emboss-5.0.0 )
+RESTRICT=binchecks strip
+SLOT=0
+SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1810.tar.xz
+_md5_=03338bf80d0fb82894ab8e39e00b1898