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-rw-r--r--dev-python/pytables/Manifest6
-rw-r--r--dev-python/pytables/files/pytables-3.8.0-blosc2.patch30
-rw-r--r--dev-python/pytables/files/pytables-3.8.0-cython3.patch40
-rw-r--r--dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch69
-rw-r--r--dev-python/pytables/metadata.xml27
-rw-r--r--dev-python/pytables/pytables-3.8.0-r3.ebuild84
6 files changed, 0 insertions, 256 deletions
diff --git a/dev-python/pytables/Manifest b/dev-python/pytables/Manifest
deleted file mode 100644
index 60c2624a565c..000000000000
--- a/dev-python/pytables/Manifest
+++ /dev/null
@@ -1,6 +0,0 @@
-AUX pytables-3.8.0-blosc2.patch 842 BLAKE2B 1ab97a9b0d5c5e435671c00cb8d5ab77048f9eea493a716846e7d350f902487c2098d43d194c5373ca4297f0d266b723a3d9eb59f69836278adfbb4a75c22820 SHA512 b64944a0916b7da5543b518e16fc70ead6b2f7c0bfdb79bf0e49549067464997b9906bb2b1d0d02b32abbe315135c09e64ffec91fc57b8f87117c33564684b25
-AUX pytables-3.8.0-cython3.patch 1443 BLAKE2B 064d0175ecd337d3e5628da11c784158d40459da40d5e2a9ee38033e5ab6bcb6e3bfeda5b67f5e3768c3a7554740dcbd2c063f7a786dbdbf40bc603c75f091d5 SHA512 ae3c76ba53b02f0168f1cf997980e2cfa20634348238be5bec0e9f0693d0b719ce4d7b9c547a0e635cc160c75e95bfc15181c82b5199bf2a9978a878aa894c3e
-AUX pytables-3.8.0-optional-cpuinfo.patch 3185 BLAKE2B 1e5afa906c427408a81b477f4d6aa09ee903d73db3cee048464b277a69ee0f96cdc23ca660d4eb68b49ae4d88386711e5340cb4deae4632a8af0512ca5b64437 SHA512 3f9da3a9f2a95d80b2af458744a369a45725aa72fa64a316f6e281695e710aadf0d785cc80fd25639a032a9b3bf04a3f06c73c21b1812656251e8ebdaf842032
-DIST tables-3.8.0.tar.gz 8014052 BLAKE2B 28d120ad609ebc9ae8cd97286bb3fb9c484bd8a179edcf0de1b96e4400b7a21b4db835d94fae3aaee84924bd46b84b84da12c538b39517362d805651e7aa3aef SHA512 1616c00787a2e88ff3dc2aebe3a1b2ad428b5a8ea48fc94058b49c509f1c040b540b3f62551b16b3246d2fed58e0b33443cbdaaf1dfcba5a6eead5f3e8028029
-EBUILD pytables-3.8.0-r3.ebuild 1869 BLAKE2B 0680545f98f2ed98612be1d84dd6d984f11e1d27f841f72d27d80c8f24cbccac8069e4bf65d187648636d44cc5ce64a2c5d06bbea747c5b2e90cbbda2b4a3a7b SHA512 75af8585916a15f44ef727a7f0800bd9d94a032e5494b67c77dc9cf126233725c45483cd3522549a28bedbe7d3dd5fa04f87a14084d12bbbe5c0147140578eb4
-MISC metadata.xml 1090 BLAKE2B cc213079beb7f2888b5eab4886711fe8a4b7a4bc3cf13ff4d2247bd04edc05fdaed19c464ae28beac27de511ea997bcc873866bf9d544d6efe8cacd095e8640a SHA512 bd322eade443a3b1b610d262a0a6a30088246b3f772624fdfbf6eac85f240deb3f9001be1e2e20e334e65701c24e1d57100c67864d14067b1ae16e99f2136e8a
diff --git a/dev-python/pytables/files/pytables-3.8.0-blosc2.patch b/dev-python/pytables/files/pytables-3.8.0-blosc2.patch
deleted file mode 100644
index 59403cdec12d..000000000000
--- a/dev-python/pytables/files/pytables-3.8.0-blosc2.patch
+++ /dev/null
@@ -1,30 +0,0 @@
-From 99a7f336635aaeb666ea8dc791743177a030dc18 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?= <mgorny@gentoo.org>
-Date: Wed, 28 Dec 2022 15:53:08 +0100
-Subject: [PATCH] Workaround blosc2 detection via blosc2 package
-
----
- setup.py | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/setup.py b/setup.py
-index 966be028..2708deb9 100755
---- a/setup.py
-+++ b/setup.py
-@@ -262,11 +262,11 @@ if __name__ == "__main__":
-
- debug = "--debug" in sys.argv
-
-- blosc2_inc, blosc2_lib = get_blosc2_directories()
-+ blosc2_inc, blosc2_lib = "", ""
-
- # Global variables
- lib_dirs = [blosc2_lib]
-- inc_dirs = [Path("hdf5-blosc/src"), Path("hdf5-blosc2/src"), blosc2_inc]
-+ inc_dirs = [Path("hdf5-blosc/src"), Path("hdf5-blosc2/src")]
- optional_libs = []
- copy_libs = []
-
---
-2.39.0
-
diff --git a/dev-python/pytables/files/pytables-3.8.0-cython3.patch b/dev-python/pytables/files/pytables-3.8.0-cython3.patch
deleted file mode 100644
index 9ad0b72d224a..000000000000
--- a/dev-python/pytables/files/pytables-3.8.0-cython3.patch
+++ /dev/null
@@ -1,40 +0,0 @@
-From a70e36f0b0d4fb15b0b50e7ca513c4e4452767cc Mon Sep 17 00:00:00 2001
-From: Matus Valo <matusvalo@gmail.com>
-Date: Wed, 15 Mar 2023 22:49:07 +0100
-Subject: [PATCH] Fix build errors when compiled using cython 3.0.0b1.
-
----
- pyproject.toml | 2 +-
- tables/tableextension.pyx | 2 +-
- tables/utilsextension.pyx | 2 +-
- 3 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/tables/tableextension.pyx b/tables/tableextension.pyx
-index 8f3bb01b..4a50c6ab 100644
---- a/tables/tableextension.pyx
-+++ b/tables/tableextension.pyx
-@@ -37,7 +37,7 @@ from .utils import SizeType
- from .utilsextension cimport get_native_type, cstr_to_pystr
-
- # numpy functions & objects
--from hdf5extension cimport Leaf
-+from .hdf5extension cimport Leaf
- from cpython cimport PyErr_Clear
- from libc.stdio cimport snprintf
- from libc.stdlib cimport malloc, free
-diff --git a/tables/utilsextension.pyx b/tables/utilsextension.pyx
-index 5b16dcd3..664e1ea5 100644
---- a/tables/utilsextension.pyx
-+++ b/tables/utilsextension.pyx
-@@ -344,7 +344,7 @@ except ImportError:
- #---------------------------------------------------------------------
-
- # Error handling helpers
--cdef herr_t e_walk_cb(unsigned n, const H5E_error_t *err, void *data) with gil:
-+cdef herr_t e_walk_cb(unsigned n, const H5E_error_t *err, void *data) noexcept with gil:
- cdef object bt = <object>data # list
- #cdef char major_msg[256]
- #cdef char minor_msg[256]
---
-2.40.1
-
diff --git a/dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch b/dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch
deleted file mode 100644
index 2843914f4a87..000000000000
--- a/dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch
+++ /dev/null
@@ -1,69 +0,0 @@
-https://github.com/PyTables/PyTables/pull/1013
-
-From 9d2487eb53af940de3b5c79200c9f4c2b90f51f2 Mon Sep 17 00:00:00 2001
-From: Sam James <sam@gentoo.org>
-Date: Mon, 3 Apr 2023 02:07:47 +0100
-Subject: [PATCH] Handle py-cpuinfo not being installed
-
-Fallback gracefully if py-cpuinfo isn't installed. We already handle this in
-setup.py but we need to avoid calling it in leaf.py too.
-
-py-cpuinfo isn't available on all platforms and PyTables is needed to run
-the test suite for some software, so we need to be able to run PyTables
-in places where py-cpuinfo isn't yet ported.
-
-Signed-off-by: Sam James <sam@gentoo.org>
---- a/tables/leaf.py
-+++ b/tables/leaf.py
-@@ -4,7 +4,11 @@ import warnings
- import math
-
- import numpy as np
--import cpuinfo
-+try:
-+ import cpuinfo
-+ missing_cpuinfo = False
-+except ImportError:
-+ missing_cpuinfo = True
-
- from .flavor import (check_flavor, internal_flavor, toarray,
- alias_map as flavor_alias_map)
-@@ -336,20 +340,21 @@ class Leaf(Node):
- # Use a decent default value for chunksize
- chunksize *= 16
- # Now, go explore the L3 size and try to find a smarter chunksize
-- cpu_info = cpuinfo.get_cpu_info()
-- if 'l3_cache_size' in cpu_info:
-- # In general, is a good idea to set the chunksize equal to L3
-- l3_cache_size = cpu_info['l3_cache_size']
-- # cpuinfo sometimes returns cache sizes as strings (like,
-- # "4096 KB"), so refuse the temptation to guess and use the
-- # value only when it is an actual int.
-- # Also, sometimes cpuinfo does not return a correct L3 size;
-- # so in general, enforcing L3 > L2 is a good sanity check.
-- l2_cache_size = cpu_info.get('l2_cache_size', "Not found")
-- if (type(l3_cache_size) is int and
-- type(l2_cache_size) is int and
-- l3_cache_size > l2_cache_size):
-- chunksize = l3_cache_size
-+ if not missing_cpuinfo:
-+ cpu_info = cpuinfo.get_cpu_info()
-+ if 'l3_cache_size' in cpu_info:
-+ # In general, is a good idea to set the chunksize equal to L3
-+ l3_cache_size = cpu_info['l3_cache_size']
-+ # cpuinfo sometimes returns cache sizes as strings (like,
-+ # "4096 KB"), so refuse the temptation to guess and use the
-+ # value only when it is an actual int.
-+ # Also, sometimes cpuinfo does not return a correct L3 size;
-+ # so in general, enforcing L3 > L2 is a good sanity check.
-+ l2_cache_size = cpu_info.get('l2_cache_size', "Not found")
-+ if (type(l3_cache_size) is int and
-+ type(l2_cache_size) is int and
-+ l3_cache_size > l2_cache_size):
-+ chunksize = l3_cache_size
- # In Blosc2, the chunksize cannot be larger than 2 GB - BLOSC2_MAX_BUFFERSIZE
- if chunksize > 2**31 - 32:
- chunksize = 2**31 - 32
---
-2.40.0
-
diff --git a/dev-python/pytables/metadata.xml b/dev-python/pytables/metadata.xml
deleted file mode 100644
index 2fea045e5982..000000000000
--- a/dev-python/pytables/metadata.xml
+++ /dev/null
@@ -1,27 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>python@gentoo.org</email>
- <name>Python</name>
- </maintainer>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <longdescription lang="en">
- PyTables is a hierarchical database package designed to efficently
- manage very large amounts of data. PyTables is built on top of the
- HDF5 library and the NumPy package. It features an object-oriented
- interface that, combined with natural naming and C-code generated
- from Pyrex sources, makes it a fast, yet extremely easy to use tool
- for interactively save and retrieve large amounts of data.
- </longdescription>
- <use>
- <flag name="cpudetection">Enables runtime CPU detection (useful for bindist, compatibility on other CPUs)</flag>
- </use>
- <upstream>
- <remote-id type="github">PyTables/PyTables</remote-id>
- <remote-id type="pypi">tables</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/dev-python/pytables/pytables-3.8.0-r3.ebuild b/dev-python/pytables/pytables-3.8.0-r3.ebuild
deleted file mode 100644
index b585b56728f0..000000000000
--- a/dev-python/pytables/pytables-3.8.0-r3.ebuild
+++ /dev/null
@@ -1,84 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_EXT=1
-PYPI_PN="tables"
-PYTHON_COMPAT=( python3_{9..11} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit distutils-r1 prefix pypi
-
-DESCRIPTION="Hierarchical datasets for Python"
-HOMEPAGE="
- https://www.pytables.org/
- https://github.com/PyTables/PyTables/
- https://pypi.org/project/tables/
-"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ppc ppc64 ~riscv ~s390 ~sparc x86 ~amd64-linux ~x86-linux"
-IUSE="+cpudetection examples test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
- app-arch/bzip2:0=
- app-arch/lz4:0=
- >=app-arch/zstd-1.0.0:=
- >=dev-libs/c-blosc-1.11.1:0=
- dev-libs/c-blosc2:=
- dev-libs/lzo:2=
- >=dev-python/numpy-1.19[${PYTHON_USEDEP}]
- >=sci-libs/hdf5-1.8.4:=
-"
-RDEPEND="
- ${DEPEND}
- >=dev-python/numexpr-2.6.2[${PYTHON_USEDEP}]
- dev-python/packaging[${PYTHON_USEDEP}]
- cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] )
-"
-BDEPEND="
- >=dev-python/cython-0.21[${PYTHON_USEDEP}]
- virtual/pkgconfig
- cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] )
- test? (
- ${RDEPEND}
- )
-"
-
-python_prepare_all() {
- local PATCHES=(
- "${FILESDIR}"/${P}-blosc2.patch
- "${FILESDIR}"/${P}-optional-cpuinfo.patch
- "${FILESDIR}"/${P}-cython3.patch
- )
-
- export PYTABLES_NO_EMBEDDED_LIBS=1
- export USE_PKGCONFIG=TRUE
-
- rm -r c-blosc/{blosc,internal-complibs} || die
- rm tables/libblosc2.so || die
- sed -i -e '/blosc2/d' requirements.txt || die
- hprefixify -w '/prefixes =/' setup.py
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_test() {
- cd "${BUILD_DIR}"/lib* || die
- "${EPYTHON}" tables/tests/test_all.py -v || die
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- if use examples; then
- dodoc -r contrib examples
- docompress -x /usr/share/doc/${PF}/{contrib,examples}
- fi
-}
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-11 18:42:02 +0000