diff options
Diffstat (limited to 'dev-python/pandas/pandas-2.0.3.ebuild')
| -rw-r--r-- | dev-python/pandas/pandas-2.0.3.ebuild | 232 |
1 files changed, 232 insertions, 0 deletions
diff --git a/dev-python/pandas/pandas-2.0.3.ebuild b/dev-python/pandas/pandas-2.0.3.ebuild new file mode 100644 index 000000000000..9112daf38f27 --- /dev/null +++ b/dev-python/pandas/pandas-2.0.3.ebuild @@ -0,0 +1,232 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_EXT=1 +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..11} ) +PYTHON_REQ_USE="threads(+)" + +VIRTUALX_REQUIRED="manual" + +inherit distutils-r1 multiprocessing optfeature virtualx + +DESCRIPTION="Powerful data structures for data analysis and statistics" +HOMEPAGE=" + https://pandas.pydata.org/ + https://github.com/pandas-dev/pandas/ + https://pypi.org/project/pandas/ +" +SRC_URI=" + https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz +" +S=${WORKDIR}/${P/_/} + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~arm64 ~ppc ~ppc64 ~riscv ~x86" +IUSE="doc full-support minimal test X" +RESTRICT="!test? ( test )" + +RECOMMENDED_DEPEND=" + >=dev-python/bottleneck-1.3.2[${PYTHON_USEDEP}] + >=dev-python/numexpr-2.7.1[${PYTHON_USEDEP}] +" + +# TODO: add pandas-gbq to the tree +# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11 +# https://github.com/statsmodels/statsmodels/issues/8287 +OPTIONAL_DEPEND=" + >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + >=dev-python/html5lib-1.1[${PYTHON_USEDEP}] + >=dev-python/jinja-3.0.0[${PYTHON_USEDEP}] + >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}] + >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}] + >=dev-python/pytables-3.6.1[${PYTHON_USEDEP}] + >=dev-python/sqlalchemy-1.4.16[${PYTHON_USEDEP}] + >=dev-python/tabulate-0.8.9[${PYTHON_USEDEP}] + >=dev-python/xarray-0.21.0[${PYTHON_USEDEP}] + >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}] + >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}] + >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}] + !hppa? ( + $(python_gen_cond_dep ' + dev-python/statsmodels[${PYTHON_USEDEP}] + ' python3_{8..10} ) + >=dev-python/scipy-1.7.1[${PYTHON_USEDEP}] + ) + X? ( + || ( + >=dev-python/PyQt5-5.15.1[${PYTHON_USEDEP}] + >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) + ) +" +DEPEND=" + >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}] +" +COMMON_DEPEND=" + ${DEPEND} + >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}] + >=dev-python/pytz-2020.1[${PYTHON_USEDEP}] +" +BDEPEND=" + ${COMMON_DEPEND} + >=dev-python/cython-0.29.33[${PYTHON_USEDEP}] + >=dev-python/versioneer-0.28[${PYTHON_USEDEP}] + doc? ( + ${VIRTUALX_DEPEND} + >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}] + >=dev-python/html5lib-1.1[${PYTHON_USEDEP}] + dev-python/ipython[${PYTHON_USEDEP}] + >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}] + >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}] + dev-python/nbsphinx[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}] + >=dev-python/pytables-3.6.1[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] + dev-python/rpy[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + virtual/pandoc + x11-misc/xclip + ) + test? ( + ${VIRTUALX_DEPEND} + ${RECOMMENDED_DEPEND} + ${OPTIONAL_DEPEND} + >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}] + >=dev-python/hypothesis-6.34.2[${PYTHON_USEDEP}] + >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}] + >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}] + >=dev-python/pytest-7.3.2[${PYTHON_USEDEP}] + >=dev-python/pytest-asyncio-0.17.0[${PYTHON_USEDEP}] + >=dev-python/pytest-xdist-2.2.0[${PYTHON_USEDEP}] + >=dev-python/psycopg-2.8.6:2[${PYTHON_USEDEP}] + >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) +" +# dev-python/statsmodels invokes a circular dep +# hence rm from doc? ( ), again +RDEPEND=" + ${COMMON_DEPEND} + !minimal? ( ${RECOMMENDED_DEPEND} ) + full-support? ( ${OPTIONAL_DEPEND} ) +" + +python_prepare_all() { + # Prevent un-needed download during build + sed -e "/^ 'sphinx.ext.intersphinx',/d" \ + -i doc/source/conf.py || die + + # unnecessary with system tzdata + sed -i -e '/tzdata/d' pyproject.toml || die + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile -j1 +} + +python_compile_all() { + # To build docs the need be located in $BUILD_DIR, + # else PYTHONPATH points to unusable modules. + if use doc; then + cd "${BUILD_DIR}"/lib || die + cp -ar "${S}"/doc . && cd doc || die + LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html + fi +} + +src_test() { + virtx distutils-r1_src_test +} + +python_test() { + local EPYTEST_DESELECT=( + # test for rounding errors, fails if we have better precision + # e.g. on amd64 with FMA or on arm64 + # https://github.com/pandas-dev/pandas/issues/38921 + pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues + + # TODO + pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated + pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct + pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip + pandas/tests/copy_view/test_internals.py::test_switch_options + + # TODO: xdist? + pandas/tests/test_expressions.py::TestExpressions::test_run_binary + + # TODO: these require a running db server + pandas/tests/io/test_sql.py::TestMySQLAlchemy + pandas/tests/io/test_sql.py::TestMySQLAlchemyConn + pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy + pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn + + # OOMs + pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb + + # xarray version incompatibility + pandas/tests/test_downstream.py::test_xarray_cftimeindex_nearest + + # warning from dask + pandas/tests/test_downstream.py::test_construct_dask_float_array_int_dtype_match_ndarray + + # TODO: mpl incompatibility? + pandas/tests/plotting/frame/test_frame.py::TestDataFramePlots::test_plain_axes + + # crashes + pandas/tests/io/pytables/test_file_handling.py::test_complibs + + # deprecation warning + pandas/tests/io/pytables/test_retain_attributes.py::test_retain_index_attributes2 + + # TODO + pandas/tests/tseries/offsets/test_year.py::test_add_out_of_pydatetime_range + ) + + local -x LC_ALL=C.UTF-8 + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die + epytest pandas --skip-slow --skip-network -m "not single" \ + -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}" +} + +python_install_all() { + if use doc; then + dodoc -r "${BUILD_DIR}"/lib/doc/build/html + einfo "An initial build of docs is absent of references to statsmodels" + einfo "due to circular dependency. To have them included, emerge" + einfo "statsmodels next and re-emerge pandas with USE doc" + fi + + distutils-r1_python_install_all +} + +pkg_postinst() { + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml + optfeature "for msgpack compression using blosc" dev-python/blosc + optfeature "Template engine for conditional HTML formatting" dev-python/jinja + optfeature "Plotting support" dev-python/matplotlib + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.7" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt + optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.6.1" + optfeature "R I/O support" dev-python/rpy + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels + optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.16" + optfeature "miscellaneous statistical functions" dev-python/scipy + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel +} |