1 files changed, 45 insertions, 0 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.430.0-r2.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.430.0-r2.ebuild
new file mode 100644
index 000000000000..ed1ab08f8255
--- /dev/null
+++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.430.0-r2.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DIST_AUTHOR=LDS
+DIST_VERSION=1.43
+inherit perl-module toolchain-funcs multilib
+
+DESCRIPTION="Read SAM/BAM database files"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+LICENSE="|| ( Apache-2.0 Artistic-2 GPL-1+ )"
+
+RDEPEND="
+	>=sci-biology/bioperl-1.6.9
+	sci-biology/samtools:0.1-legacy=
+"
+DEPEND="
+	dev-perl/Module-Build
+	sci-biology/samtools:0.1-legacy=
+"
+BDEPEND="${RDEPEND}
+	virtual/perl-ExtUtils-CBuilder
+	>=dev-perl/Module-Build-0.420.0
+"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.430.0-legacy-r1.patch
+)
+
+src_configure() {
+	tc-export CC
+	unset LD
+	if [[ -n "${CCLD}" ]]; then
+		export LD="${CCLD}"
+	fi
+	SAM_LIB="${EPREFIX}/usr/$(get_libdir)/libbam-0.1-legacy.so" \
+		SAM_INCLUDE="${EPREFIX}/usr/include/bam-0.1-legacy" \
+		perl-module_src_configure
+}
+src_compile() {
+	./Build --config optimize="${CFLAGS}" build || die
+}