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-rw-r--r--dev-lang/R/Manifest7
-rw-r--r--dev-lang/R/R-4.1.0-r2.ebuild235
-rw-r--r--dev-lang/R/R-4.1.2-r1.ebuild2
-rw-r--r--dev-lang/R/R-4.2.0.ebuild (renamed from dev-lang/R/R-4.1.2.ebuild)12
4 files changed, 14 insertions, 242 deletions
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 05f70eceb02f..dbd64333f21e 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -3,11 +3,10 @@ AUX R-3.4.1-rmath-shared.patch 899 BLAKE2B 0aba9c1c5417531647bed3829d53909e6f398
AUX R-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch 469 BLAKE2B ee716b068316bbac0c07fe44bef739a491af5f4e90ba268cf7db428350763d498ab0b1bc9efa02ac885d0ac64aa5d076deaac094725766e340cbcd9d7e839b22 SHA512 cb7bc73fd0f1aa4159b25bc76318074662afddafdef8acc8caf20afb98da6c065c3bd0895c4a7a7f18a174d21d59c0f054a46aa513db1b5b622a110e7c54e171
AUX R-3.6.2-no-gzip-doc.patch 443 BLAKE2B 1154e9f67f08e1d8b286152bd093789a0b94b3a2422bdb54d1d1d03729bd892811e68121309c41ef4323ed31efcea82f3e265b37445e9870bbd88c5413311345 SHA512 99678dbf809761a2991cd5cbe6ff5ba8d1c3e9388f69d94b30726caae4eee29ae50ee74aa24e3851d41559f804381ec18a2cd818b97b5417bf7ae660c93ad2a6
DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83edddd2cb391c20473607f136d91a8e9f4ab9e453f6927d2ca9145762920424e3a1dcea89309afde56efd5d32c SHA512 6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c
-DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729
DIST R-4.1.2.tar.gz 34009074 BLAKE2B 7ca14b28fc40548180dde979d57f93f41fb3966697d58f686cf63e24e4cbf2de8166240952e708fc94f97846cd57bbd559b4edb688500e1db2a6704de16f508c SHA512 657c7950a88f632f1bbb08dbd0b3fb485732a25d8bbcb8a7939a40b23c7a235fdb9b46c296acaa9f72eabebe96e270ecbdcd7970fc9d3a299e6687bea45f2d3f
+DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
EBUILD R-4.0.5-r1.ebuild 7313 BLAKE2B fd84cc2304d72deaf1f723bffed2906cbd810b913d4c636a37c12f4dab6ffa866ee769636bb700e2447a8a771dbed5cad9df3f289d510d9593f08f9c167f0a3f SHA512 50a086dade0562b6494623eb56f7fb2b98982a8d1b3d9f5ec27c35399ccf2de13c3c5a0ac51dc7d46abaac74d9838869aeeb274a7ac5120bfdc87c3a05354747
-EBUILD R-4.1.0-r2.ebuild 7080 BLAKE2B 312412a327e25891d3b4236f648d4958b0d7ffcada36add367baeced3f325af645cb21c5126190643bfd92eba34d169c14a68e2cdfdc3b9c98de7e7254171e3b SHA512 978cf3808415dbcea5fcbf81a3e9877e236317bb89a821b2f812f0673631fee2e4be63a66c9b26ced3f85ef429ddca4482624e7e8d87b9c9172e87707d7325c8
-EBUILD R-4.1.2-r1.ebuild 7075 BLAKE2B 1eedcee7891e2aa3d28a34ea43e0020879ceecade6c8423cf2d4f2d0f057b427b70d661ee4411d7390639cb97177a2cf430e0653b682f70f9929b0f20e3929e5 SHA512 45f5570fe9ed2bcdd0898f673026cd1aba6d169d8109f47b01e91095ba849a2080c1260a40e5747e023f7fb2822fcadc69ed490cc2dc13ca2b9a3e8662e9fa66
-EBUILD R-4.1.2.ebuild 7038 BLAKE2B 3e7ac8d5428f980703482a3ce4078aebbc9b983b7a80cb14f724f105473446ad5f235de6460ab2cf7b1c8d6699ddba755b63cad7edc21580aa070714c40e2af3 SHA512 fa144fa713a765892b8c9365aefe34b157f55f7e81aba0930188f9309363c1b6cca373d1e7335909310c4edb9781f2f572a4c552533d1187364ed41fb50d49a1
+EBUILD R-4.1.2-r1.ebuild 7072 BLAKE2B 062319e8872e8698da83116b72f8cb011de82dafab6d70926e6e9b96b4c646efd61d257b62586ba3ac565e14cb8a47f341190ebe10477f414c1ef27f3dcb7554 SHA512 867b5c48ee0f3c3e36d47f6f6848494c1e7f26c3653735b250a7a0a85304db55ce6e80773caf1bc4bf7a0831ec3184aeffe13422ad7303c3d5ffb2d78cb99c80
+EBUILD R-4.2.0.ebuild 7328 BLAKE2B 6ccac972a0ab3008cce81b4966a7bef2bc75f6686d95d8f2cd30e31f0f74d88dcb2ce845a7ee70389083431e0269075eba07c5866406179a41b221d1d7edcff9 SHA512 8066da86f121d9f2b09c7830303488957745d6fe7046f535507a06c199cfb730e7686bf22541031a01add94cbe1700854b2a6c380655643761f75c0150c0b275
MISC metadata.xml 1261 BLAKE2B 468178b60e894bd8dff85ecbf74d10dce61bdb21fc8b61f43d7778dbc345234fc6b5e28c7608534d558c95fa6583b5acd2e55cef7096c4cff88e84776e93e03a SHA512 0d42cb1e3b951e3b1cbf09e6e48d47cf7635c8b16708b5b1edb6c5d1b422cad2f16ce5c6f7c603efb365eb9d5b794d2d2653b408147aa9e921cd57feb3840013
diff --git a/dev-lang/R/R-4.1.0-r2.ebuild b/dev-lang/R/R-4.1.0-r2.ebuild
deleted file mode 100644
index ebf4b5c27c2e..000000000000
--- a/dev-lang/R/R-4.1.0-r2.ebuild
+++ /dev/null
@@ -1,235 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-
-REQUIRED_USE="png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )
-"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-libs/libXt x11-misc/xdg-utils )"
-
-RDEPEND="${DEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.8:* )"
-
-RESTRICT="minimal? ( test )
- !test? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-4.1.2-r1.ebuild b/dev-lang/R/R-4.1.2-r1.ebuild
index a4c36d76f9e3..dfe847ee6a93 100644
--- a/dev-lang/R/R-4.1.2-r1.ebuild
+++ b/dev-lang/R/R-4.1.2-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
REQUIRED_USE="
diff --git a/dev-lang/R/R-4.1.2.ebuild b/dev-lang/R/R-4.2.0.ebuild
index a29cab314d2a..28e62a99b24d 100644
--- a/dev-lang/R/R-4.1.2.ebuild
+++ b/dev-lang/R/R-4.2.0.ebuild
@@ -41,6 +41,7 @@ DEPEND="
app-arch/xz-utils
app-text/ghostscript-gpl
dev-libs/libpcre2:=
+ >=dev-libs/tre-0.8.0_p20210321[approx]
net-libs/libtirpc
net-misc/curl
virtual/blas
@@ -107,6 +108,11 @@ src_prepare() {
sed -e 's:\.\./manual/:manual/:g' \
-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+ # Disable this test until it passes again,
+ # https://bugs.r-project.org/show_bug.cgi?id=18338
+ sed -e 's/ reg-packages.R / /' \
+ -i tests/Makefile.common || die
+
use lapack && \
export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
@@ -142,8 +148,6 @@ src_prepare() {
src_configure() {
filter-ldflags -Wl,-Bdirect -Bdirect
- # --with-system-tre \
- # tre is patched from upstream
econf \
--enable-byte-compiled-packages \
--enable-R-shlib \
@@ -151,6 +155,7 @@ src_configure() {
--disable-R-static-lib \
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ --with-system-tre \
$(use_enable java) \
$(use_enable lto lto R) \
$(use_enable nls) \
@@ -238,6 +243,9 @@ src_install() {
for f in "${NOCOMPRESS_DOCS[@]}"; do
docompress -x "/usr/share/doc/${PF}/${f}"
done
+
+ # Finally, an extra copy of this started showing up at some point...
+ rm "${ED}/usr/$(get_libdir)/R/COPYING" || die
}
pkg_postinst() {
generated by cgit v1.2.3 (git 2.25.1) at 2025-02-09 22:26:53 +0000