gentoo resync : 03.11.2019

2 files changed, 170 insertions, 0 deletions

diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest
index eb849e38165f..c642d4691696 100644
--- a/sys-cluster/openmpi/Manifest
+++ b/sys-cluster/openmpi/Manifest
@@ -14,6 +14,7 @@ DIST openmpi-2.1.6.tar.bz2 8324626 BLAKE2B 4aed4b397c0e0ead24ed5e9bbf45ee8f6719a
 DIST openmpi-3.0.4.tar.bz2 9308341 BLAKE2B 84536082f8415c9a0e41db01d96d64bffc463ca84de7730b25789dfee74e2205db5467739a42f13b0938d0934b45c948cd2be406290cdb4b196a5b51a5a3fc88 SHA512 c9db432e89d680e8857444395fee3544bebd4d1535f3e85a9435ca21f9848fad9f181e6be1ab8b93241b88723395535e3b3bdb2a5dd4128ed26df887b9a55810
 DIST openmpi-3.1.4.tar.bz2 9468371 BLAKE2B 70a93aa170086f43b2eb4f9b7c74673065bd309ae7a4c8f478a6db7523167fd1d25af19f87661149f6dd6033898ab47b86690a0421a01aa6f5a4d70478072e0e SHA512 5b4aafffc79fd85cb94a11a6e2fac563b142ac532191009eb35826c432ed3c391a6616e2ca92eacbf36137468eadb7c0f7ddc787034bc95c4214232ed5128338
 DIST openmpi-4.0.1.tar.bz2 9838152 BLAKE2B 75657940e37c23fbe88032f116588960c6bcf34c4928d77b45e8fde6fb51e814f521adb6c5155cb588fff9d1b382c2470873d90979a68598ff13e1aa205fc811 SHA512 09f35dc2e44b4f84aab9c5af9d81f90bbdb030e4d90800a5d3ffae88cb32b7faecc9bea0abb113da53c21f73e9d19db68f961f997bc47bdd28d83a87beee0731
+DIST openmpi-4.0.2.tar.bz2 9819372 BLAKE2B 000faa8ff032f9aa6bf5f0a14fb9a363080cfcdd7c6f8ab90bc9507fd7a473d70502574ee1e75c88acecb06c516a643ef7b9e804fb580be9fc860b7b1fb1cc5d SHA512 634d45d989f1e0b8848bfb4eb4527c7edd76d4fccd77a5f8d85a46a5822f97ba653adf13df857c87ae56a8117b4ae2d45ec24249c6ee41a562446d4112ddb770
 EBUILD openmpi-1.10.7.ebuild 6381 BLAKE2B 7d07db3b67d2df22416e862f2e3493be1bebb27beddf2aa333c6f45518ece0397ca360c354266dc84c1cd73af7a700064579279398c483d39064b923f2507d7f SHA512 956982cfffd3f7971031f7861ce93343665be39641d03afd6e2e0be8af0fdbe943e8ad3456ccc3b8159857cd292ee2c5b6e7dffa882cf530210976d3b242ee01
 EBUILD openmpi-1.4.3.ebuild 2618 BLAKE2B a030b33a0fae59cf7e75cc8252af897ba703f95e259f938872182dfa97c86f587eb2259594f75114f939c7b0961490452ff3c11c2ed3a6b60ae3f2974d926446 SHA512 5c47bdf1192a6d2b95fa35c217a27ff6f69c0ca1bf5c5be3ff43f7785b354c214a371697006275efc08fc9ec3bf27d284db45a7f5d6cb1af9937c42340f79f83
 EBUILD openmpi-1.4.5.ebuild 2627 BLAKE2B 3aef1a37d78c175dcf3e3a47321a52f03d2fd61b1dde797ac811b2444d100b29e3eb4686d9961848573055af62ce41f114055eb729e2cec469e5edbc630ec4aa SHA512 4c31cc8ae2986222645c873f30ba0aa53f612524e4019428c3d803a83d0d947b08770317b440749a93ef7485e71c174a39436589b4a73786253a5289a8d7e2bb
@@ -28,4 +29,5 @@ EBUILD openmpi-2.1.6.ebuild 5606 BLAKE2B 2303401b7048a5e5a05552f79e964e45f1d0df2
 EBUILD openmpi-3.0.4.ebuild 5492 BLAKE2B 18dcd4347f186116781da19bce63083d0f0bda9c4096e8a38bcd066bea3d655fa348fed4a5b8ac760e110ec91ec205fc33d91dd407d57165362b3c03ae4e37e5 SHA512 fe63abca4c2883e5801ef1886a06e0300031400bdb2a28f39099159185c33f9998b6bc3066f4b9b9b6e0d7d86f98e8bdbe724050b7eeead3c83320bd1148588e
 EBUILD openmpi-3.1.4.ebuild 5492 BLAKE2B 18dcd4347f186116781da19bce63083d0f0bda9c4096e8a38bcd066bea3d655fa348fed4a5b8ac760e110ec91ec205fc33d91dd407d57165362b3c03ae4e37e5 SHA512 fe63abca4c2883e5801ef1886a06e0300031400bdb2a28f39099159185c33f9998b6bc3066f4b9b9b6e0d7d86f98e8bdbe724050b7eeead3c83320bd1148588e
 EBUILD openmpi-4.0.1-r1.ebuild 5434 BLAKE2B 30b8695cacf0f65506d99a63df4cccac15af7aaac3ad54b75ca3240b646fe6a6efc5952426b61b12fa1c35c9aab1303d98a9ecc19293dd9804f4bb9e5efa7aa9 SHA512 de78d49aea8df2db7e9e2c43d8d577e95c5a3064afe2f988ad45fa463d5ae8b3e87d12c626b24048354ece58bfdb50b7894e634d00f2b5a9febfea2bc7eabaf0
+EBUILD openmpi-4.0.2.ebuild 5434 BLAKE2B 30b8695cacf0f65506d99a63df4cccac15af7aaac3ad54b75ca3240b646fe6a6efc5952426b61b12fa1c35c9aab1303d98a9ecc19293dd9804f4bb9e5efa7aa9 SHA512 de78d49aea8df2db7e9e2c43d8d577e95c5a3064afe2f988ad45fa463d5ae8b3e87d12c626b24048354ece58bfdb50b7894e634d00f2b5a9febfea2bc7eabaf0
 MISC metadata.xml 928 BLAKE2B f6cacb50815977ad28b83ec24725021a140db9592152d2a9e238da051058287c01c73ac557392946f83949caee2f75a847ba5e82c4b6f816ab3f8288aa38b719 SHA512 a7ba5e4bfc8e6c1a74667f31c4d8df580699fa84766cbc597a66c1a0ed12ece60bf1f683fcbd30529b042588ae4460741b4eef407e232532a3eede1766326f1e
diff --git a/sys-cluster/openmpi/openmpi-4.0.2.ebuild b/sys-cluster/openmpi/openmpi-4.0.2.ebuild
new file mode 100644
index 000000000000..aaf63224f630
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-4.0.2.ebuild
@@ -0,0 +1,168 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+	openmpi_fabrics_ofed
+	openmpi_fabrics_knem
+	openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+	openmpi_rm_pbs
+	openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+	openmpi_ofed_features_control-hdr-padding
+	openmpi_ofed_features_udcm
+	openmpi_ofed_features_rdmacm
+	openmpi_ofed_features_dynamic-sl"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="http://www.open-mpi.org"
+SRC_URI="http://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
+IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java romio
+	${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+	openmpi_rm_pbs? ( !openmpi_rm_slurm )
+	openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )"
+
+CDEPEND="
+	!sys-cluster/mpich
+	!sys-cluster/mpich2
+	!sys-cluster/nullmpi
+	!sys-cluster/mpiexec
+	>=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads]
+	dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+	>=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}]
+	>=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= )
+	elibc_FreeBSD? ( || ( dev-libs/libexecinfo >=sys-freebsd/freebsd-lib-10.0 ) )
+	openmpi_fabrics_ofed? ( sys-fabric/ofed:* )
+	openmpi_fabrics_knem? ( sys-cluster/knem )
+	openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+	openmpi_rm_pbs? ( sys-cluster/torque )
+	openmpi_rm_slurm? ( sys-cluster/slurm )
+	openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )"
+
+RDEPEND="${CDEPEND}
+	java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+	java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+	/usr/include/mpi.h
+	/usr/include/openmpi/ompi/mpi/java/mpiJava.h
+)
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	java-pkg-opt-2_pkg_setup
+
+	elog
+	elog "OpenMPI has an overwhelming count of configuration options."
+	elog "Don't forget the EXTRA_ECONF environment variable can let you"
+	elog "specify configure options if you find them necessary."
+	elog
+}
+
+src_prepare() {
+	default
+
+	# Necessary for scalibility, see
+	# http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+	echo 'oob_tcp_listen_mode = listen_thread' \
+		>> opal/etc/openmpi-mca-params.conf || die
+}
+
+multilib_src_configure() {
+	if use java; then
+		# We must always build with the right -source and -target
+		# flags. Passing flags to javac isn't explicitly supported here
+		# but we can cheat by overriding the configure test for javac.
+		export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+	fi
+
+	ECONF_SOURCE=${S} econf \
+		--sysconfdir="${EPREFIX}/etc/${PN}" \
+		--enable-pretty-print-stacktrace \
+		--enable-orterun-prefix-by-default \
+		--with-hwloc="${EPREFIX}/usr" \
+		--with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--with-libltdl="${EPREFIX}/usr" \
+		--with-libevent="${EPREFIX}/usr" \
+		--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--enable-mpi-fortran=$(usex fortran all no) \
+		$(use_enable cxx mpi-cxx) \
+		$(use_with cma) \
+		$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+		$(use_enable romio io-romio) \
+		$(use_enable heterogeneous) \
+		$(use_enable ipv6) \
+		$(multilib_native_use_enable java mpi-java) \
+		$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+		$(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+		$(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+		$(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \
+		$(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+		$(multilib_native_use_with openmpi_rm_pbs tm) \
+		$(multilib_native_use_with openmpi_rm_slurm slurm)
+}
+
+multilib_src_test() {
+	# Doesn't work with the default src_test as the dry run (-n) fails.
+	emake -j1 check
+}
+
+multilib_src_install() {
+	default
+
+	# fortran header cannot be wrapped (bug #540508), workaround part 1
+	if multilib_is_native_abi && use fortran; then
+		mkdir "${T}"/fortran || die
+		mv "${ED}"/usr/include/mpif* "${T}"/fortran || die
+	else
+		# some fortran files get installed unconditionally
+		rm \
+			"${ED}"/usr/include/mpif* \
+			"${ED}"/usr/bin/mpif* \
+			|| die
+	fi
+}
+
+multilib_src_install_all() {
+	# fortran header cannot be wrapped (bug #540508), workaround part 2
+	if use fortran; then
+		mv "${T}"/fortran/mpif* "${ED}"/usr/include || die
+	fi
+
+	# Remove la files, no static libs are installed and we have pkg-config
+	find "${ED}" -name '*.la' -delete || die
+
+	if use java; then
+		local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar
+		java-pkg_dojar "${mpi_jar}"
+		# We don't want to install the jar file twice
+		# so let's clean after ourselves.
+		rm "${mpi_jar}" || die
+	fi
+	einstalldocs
+}