gentoo resync : 28.04.2019

2 files changed, 170 insertions, 0 deletions

diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest
index ae183f1015d7..d1496636816b 100644
--- a/sys-cluster/openmpi/Manifest
+++ b/sys-cluster/openmpi/Manifest
@@ -13,6 +13,7 @@ DIST openmpi-2.0.4.tar.bz2 8272983 BLAKE2B 7d0a392fbc8c896cdccefb9bf0ff83fbd8db8
 DIST openmpi-2.1.6.tar.bz2 8324626 BLAKE2B 4aed4b397c0e0ead24ed5e9bbf45ee8f6719a7566d74405cccf119ddf535891ece91c04cbcad96be5a5d9805c620aa13a1b51c0edd67c049827357e7668008b9 SHA512 f552f47961e040476e7d2949cdd3e5a0b5ad74bea2b6532608117ec893473a160cd368251d1f439fd773f4846950857baf939e7b3586bac2a099495f7bc0e349
 DIST openmpi-3.0.3.tar.bz2 9316109 BLAKE2B e67e649917911eff3286c0f3d15e181b30e4ac6061891f6e13c75570368edb943fff55e4d41ffaa4a095b2060c84d24f8c32975758ad4632bae1813accd9f516 SHA512 12bbc5add4160e732ac10f302106c4bc2fa61ef2cde955e1fdd4a7aaad44b022d6babdd4bd529f687bb03fc5e5c3804ba6b1869e9609c9725bc291524c8304d7
 DIST openmpi-3.1.3.tar.bz2 9442937 BLAKE2B 40067e1694a106d96e5ba41884a6facec9e605b5afba03ab908e4cf124f35b0691f0ab626e5190cffebc9c28d05b11b5c6401a5aa39ac17ec04650ed29e0976e SHA512 700821df676de5f85ce2793298242dcaea73f585f89540e30999792a568f193545a9f9b2bcb3ea22effa3bf14744531c4eb5fc4c84a8d7bbe5e5fdd76ab3a04a
+DIST openmpi-4.0.1.tar.bz2 9838152 BLAKE2B 75657940e37c23fbe88032f116588960c6bcf34c4928d77b45e8fde6fb51e814f521adb6c5155cb588fff9d1b382c2470873d90979a68598ff13e1aa205fc811 SHA512 09f35dc2e44b4f84aab9c5af9d81f90bbdb030e4d90800a5d3ffae88cb32b7faecc9bea0abb113da53c21f73e9d19db68f961f997bc47bdd28d83a87beee0731
 EBUILD openmpi-1.10.7.ebuild 6381 BLAKE2B 7d07db3b67d2df22416e862f2e3493be1bebb27beddf2aa333c6f45518ece0397ca360c354266dc84c1cd73af7a700064579279398c483d39064b923f2507d7f SHA512 956982cfffd3f7971031f7861ce93343665be39641d03afd6e2e0be8af0fdbe943e8ad3456ccc3b8159857cd292ee2c5b6e7dffa882cf530210976d3b242ee01
 EBUILD openmpi-1.4.3.ebuild 2618 BLAKE2B a030b33a0fae59cf7e75cc8252af897ba703f95e259f938872182dfa97c86f587eb2259594f75114f939c7b0961490452ff3c11c2ed3a6b60ae3f2974d926446 SHA512 5c47bdf1192a6d2b95fa35c217a27ff6f69c0ca1bf5c5be3ff43f7785b354c214a371697006275efc08fc9ec3bf27d284db45a7f5d6cb1af9937c42340f79f83
 EBUILD openmpi-1.4.5.ebuild 2627 BLAKE2B 3aef1a37d78c175dcf3e3a47321a52f03d2fd61b1dde797ac811b2444d100b29e3eb4686d9961848573055af62ce41f114055eb729e2cec469e5edbc630ec4aa SHA512 4c31cc8ae2986222645c873f30ba0aa53f612524e4019428c3d803a83d0d947b08770317b440749a93ef7485e71c174a39436589b4a73786253a5289a8d7e2bb
@@ -26,4 +27,5 @@ EBUILD openmpi-2.0.4.ebuild 5995 BLAKE2B f0e8b0971b2e9cdae4a46b771bee622a4c35584
 EBUILD openmpi-2.1.6.ebuild 5606 BLAKE2B 2303401b7048a5e5a05552f79e964e45f1d0df2d315c993ebb05bac0f46fd156cd1cdb98ab47e1e730bbfb162343e6a457e69432c4901dcf236f88721dc3ad90 SHA512 e0ed1db674b40c82bbe85a22dbfcdd0271c95e76769799708be0ca2c652910ef378d7ea07c1a87d6b0bdd2557a6920b02cb75f4aaa702bef114a1ed505e7abc2
 EBUILD openmpi-3.0.3.ebuild 5495 BLAKE2B 92213e16ec144e427d50eeb3b2029989eccfed58f4eaad1dae0929bbb34e669cb3cbf83e36f9eb9117763ce425b0592a6ab82804985e5c9bab6742e3f9c84ad0 SHA512 ebba49ed4d305a4c73d3fe579837022a7d3e7e80d0968e1b63e9224d871bd36ad2f646011ec971cfb0b415a6b8fc89f94f9a86a3397787e076ef133ccf7a1d1d
 EBUILD openmpi-3.1.3.ebuild 5492 BLAKE2B 631d87e09e920e6d81f811070dba2f8fa811b1504576d291296f22e8c3f1d9eb2619896f5c5561c75f244e997a5c19cfd30c6956a07c08cc91f949a6a5fdfec8 SHA512 5dc6401c116c6ef93e71b56a3282396cbbed3c961fc006d4e065d9abc70758faa5f5b7397cf1bbbd6a26da69a4e22472786f29c0cb86a61c55620ecfb86a4723
+EBUILD openmpi-4.0.1.ebuild 5432 BLAKE2B 21fff5d4df3150c1b7e420ac01000f9f350ee65f948d96e177a7b0bf59fa8e9ddaea021dbe23bbb9ac85dd94f7dcc68af4b7eb1589dd6291bfd81800b460edd0 SHA512 aa5f710e1485729b0f39f9eb993bad586bd93a1fc32476478bb69313c8e4810b703889a47364b5af5a4ed1d8cf344ac570bafebbdd427cf834e79d86bb8f739d
 MISC metadata.xml 901 BLAKE2B 8cdef4e4438351cb99b59bafb932e4b2b960f08b4eaa9917ac2a5d97fd2423781b1ec27a16005ae6470b8f50509ae3c08c2d06f95e452bd2cf00505b7a79ac35 SHA512 6f30f50d2f2173a01e7ef0d4b808352be98b64945b6af1f05cfaa28024f6efccad28984fe0ad31094f8822c5e251c1270765d5905c7737e1b84302143fe4ac09
diff --git a/sys-cluster/openmpi/openmpi-4.0.1.ebuild b/sys-cluster/openmpi/openmpi-4.0.1.ebuild
new file mode 100644
index 000000000000..25592104fbbc
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-4.0.1.ebuild
@@ -0,0 +1,168 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+	openmpi_fabrics_ofed
+	openmpi_fabrics_knem
+	openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+	openmpi_rm_pbs
+	openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+	openmpi_ofed_features_control-hdr-padding
+	openmpi_ofed_features_udcm
+	openmpi_ofed_features_rdmacm
+	openmpi_ofed_features_dynamic-sl"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="http://www.open-mpi.org"
+SRC_URI="http://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
+IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java romio
+	${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+	openmpi_rm_pbs? ( !openmpi_rm_slurm )
+	openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )"
+
+CDEPEND="
+	!sys-cluster/mpich
+	!sys-cluster/mpich2
+	!sys-cluster/nullmpi
+	!sys-cluster/mpiexec
+	>=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads]
+	dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+	>=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}]
+	>=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= )
+	elibc_FreeBSD? ( || ( dev-libs/libexecinfo >=sys-freebsd/freebsd-lib-10.0 ) )
+	openmpi_fabrics_ofed? ( sys-fabric/ofed:* )
+	openmpi_fabrics_knem? ( sys-cluster/knem )
+	openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+	openmpi_rm_pbs? ( sys-cluster/torque )
+	openmpi_rm_slurm? ( sys-cluster/slurm )
+	openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )"
+
+RDEPEND="${CDEPEND}
+	java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+	java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+	/usr/include/mpi.h
+	/usr/include/openmpi/ompi/mpi/java/mpiJava.h
+)
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	java-pkg-opt-2_pkg_setup
+
+	elog
+	elog "OpenMPI has an overwhelming count of configuration options."
+	elog "Don't forget the EXTRA_ECONF environment variable can let you"
+	elog "specify configure options if you find them necessary."
+	elog
+}
+
+src_prepare() {
+	default
+
+	# Necessary for scalibility, see
+	# http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+	echo 'oob_tcp_listen_mode = listen_thread' \
+		>> opal/etc/openmpi-mca-params.conf || die
+}
+
+multilib_src_configure() {
+	if use java; then
+		# We must always build with the right -source and -target
+		# flags. Passing flags to javac isn't explicitly supported here
+		# but we can cheat by overriding the configure test for javac.
+		export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+	fi
+
+	ECONF_SOURCE=${S} econf \
+		--sysconfdir="${EPREFIX}/etc/${PN}" \
+		--enable-pretty-print-stacktrace \
+		--enable-orterun-prefix-by-default \
+		--with-hwloc="${EPREFIX}/usr" \
+		--with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--with-libltdl="${EPREFIX}/usr" \
+		--with-libevent="${EPREFIX}/usr" \
+		--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--enable-mpi-fortran=$(usex fortran all no) \
+		$(use_enable cxx mpi-cxx) \
+		$(use_with cma) \
+		$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+		$(use_enable romio io-romio) \
+		$(use_enable heterogeneous) \
+		$(use_enable ipv6) \
+		$(multilib_native_use_enable java mpi-java) \
+		$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+		$(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+		$(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+		$(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \
+		$(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+		$(multilib_native_use_with openmpi_rm_pbs tm) \
+		$(multilib_native_use_with openmpi_rm_slurm slurm)
+}
+
+multilib_src_test() {
+	# Doesn't work with the default src_test as the dry run (-n) fails.
+	emake -j1 check
+}
+
+multilib_src_install() {
+	default
+
+	# fortran header cannot be wrapped (bug #540508), workaround part 1
+	if multilib_is_native_abi && use fortran; then
+		mkdir "${T}"/fortran || die
+		mv "${ED}"/usr/include/mpif* "${T}"/fortran || die
+	else
+		# some fortran files get installed unconditionally
+		rm \
+			"${ED}"/usr/include/mpif* \
+			"${ED}"/usr/bin/mpif* \
+			|| die
+	fi
+}
+
+multilib_src_install_all() {
+	# fortran header cannot be wrapped (bug #540508), workaround part 2
+	if use fortran; then
+		mv "${T}"/fortran/mpif* "${ED}"/usr/include || die
+	fi
+
+	# Remove la files, no static libs are installed and we have pkg-config
+	find "${ED}" -name '*.la' -delete || die
+
+	if use java; then
+		local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar
+		java-pkg_dojar "${mpi_jar}"
+		# We don't want to install the jar file twice
+		# so let's clean after ourselves.
+		rm "${mpi_jar}" || die
+	fi
+	einstalldocs
+}