gentoo resync : 16.09.2020

8 files changed, 261 insertions, 8 deletions

diff --git a/sci-visualization/Manifest.gz b/sci-visualization/Manifest.gz
index e4bbadf4d5ac..e1a3fa700bc3 100644
--- a/sci-visualization/Manifest.gz
+++ b/sci-visualization/Manifest.gz
diff --git a/sci-visualization/fig2sxd/Manifest b/sci-visualization/fig2sxd/Manifest
index a6db6a277fd7..06d9a5881fc5 100644
--- a/sci-visualization/fig2sxd/Manifest
+++ b/sci-visualization/fig2sxd/Manifest
@@ -1,4 +1,4 @@
 AUX fig2sxd-0.20-phony-check.patch 338 BLAKE2B 6106c5937dd273a521e494b255269ef887c26f754e0387609cf2adf7530cce58748179f59633245bfca3e828fd05f29c7e321c700a23fe7bc735dc221443dba8 SHA512 d4907c3a38a055ab1807a5fd6aefa85efedefb5a8ecab3fa0b7b57ae16c7a4e692e8a101ff61b6edb6ac833ae051ac853f79d4428398b5e048882e201c1d3f7a
 DIST fig2sxd_0.22.1.orig.tar.gz 26474 BLAKE2B b6d131f37edca2c810bd7366253f70dac4448b1d1504d15e82751b97c8dd8c8f686128b4bac26290902eb93bb833dc926e28901f9d173108e476f1b924f37699 SHA512 cc407f68e1d82f05566cce8d19bc3f64f4b39c338629b393d3c3d7770c6c69499943c247ddc9bebf1193bab6c4896d28c3b771ed29cfa751a0b6184847a0fc4a
 EBUILD fig2sxd-0.22.1.ebuild 680 BLAKE2B 8deeb09cdc49f3d317d31777e221f04a8577d383e8057bce1caafa0bb79767c50204da0528867aac033f899f01edb8c6d8b1467c0220354f6d1e012dedbedd63 SHA512 7ba47480d3a9bc31be07142782eec5bb0dc3701152a602df472bab0365ce59749d8db98c12fa00de8889072f792caebe301e71a8b8329128f300faa3e091ce8f
-MISC metadata.xml 479 BLAKE2B 349149cddbe374da7f3c14fe7e374a9d845ee21e4a6f1ab153ab1313b5b459f2756319a632a3f21c859eb09d413f8bb6d1ef6a8ee2bd886637875066d59951ca SHA512 43164a176d787d385a162fe451a3b0d0abcc048a9e1d6483c90a5ffceafb77ed841160da11ea8dec0ff2844cbbbbfd271b2bb38d80599f8db0fdbdc18a329129
+MISC metadata.xml 340 BLAKE2B faf3dea2be57792a7028d769a5267ffe6e39eba1096fd15a599fbde2978aeec0ba3f9049360fba1442c708d56906b0dc6820988d93b06a44e82d26f472e4719b SHA512 32e6309b41fb1d2a1e1f45131ac55258ddbaa893ffe0a419affdba568639f4e747fca7712d0f071fecac6cebd7163ae868846da8e31e37357c91d48d4a6b5241
diff --git a/sci-visualization/fig2sxd/metadata.xml b/sci-visualization/fig2sxd/metadata.xml
index ab6e7a15619f..d0ab4c7d01f9 100644
--- a/sci-visualization/fig2sxd/metadata.xml
+++ b/sci-visualization/fig2sxd/metadata.xml
@@ -5,10 +5,6 @@
     <email>sci@gentoo.org</email>
     <name>Gentoo Science Project</name>
   </maintainer>
-  <longdescription lang="en">
-  This program converts a file in XFig format into a .sxd file for
-  OpenOffice.org Draw.
-</longdescription>
   <upstream>
     <remote-id type="sourceforge">fig2sxd</remote-id>
   </upstream>
diff --git a/sci-visualization/paraview/Manifest b/sci-visualization/paraview/Manifest
index a2bb1f0f215e..74c6929306e7 100644
--- a/sci-visualization/paraview/Manifest
+++ b/sci-visualization/paraview/Manifest
@@ -3,5 +3,7 @@ AUX paraview-5.3.0-fix_buildsystem.patch 797 BLAKE2B f77c72f34c13eae42a4da281f95
 AUX paraview-5.5.0-allow_custom_build_type.patch 1036 BLAKE2B ff00093034196935e9075c5751f8a64027da009679de5c3f5b941681e65df9b91b0a05a3f0201a873313d859f029596739b1c5d705a1c35ae3cc83251312774e SHA512 0c79315d28b98d4cf45bfd48198dbb3315ebf6ffbd05e9720b35e7bdea05bd98c086dbb02cd7ac6d9580f504c7d29f498244d2b30d9e2932e881261a78b020c7
 AUX paraview-5.8.0-w-vtk-8.2.0-qt-5.15.patch 1185 BLAKE2B 9573a94af926615a3e6e8e043ea5bbbbf7a7946e33bce30c9fe6475de074142043463c345cf6caed09a60a63c241cac19ca2a54383b41752441b72e0bf5d9f17 SHA512 3552ae966be577840187590c651abc98e41047cbac6b679a17779b83b37c8d1ddd1a36a6ddd6dffb01b66138d2fc8a1bd335afb3ee488d2faa60c7ec1e4323e0
 DIST ParaView-v5.8.0.tar.xz 49789116 BLAKE2B 25689220f506221731bb5a56c647c249df0de8654a4b3347a7c09067bb5755818597bd7cfff88c2d129f448189b107079995c93599d482f7bf8b4cc6c7430e72 SHA512 43304d62c3f55bc390e68c033fb4c7dc2c0789d0dadbb98ef734b7d9de0419af4c240ce94f36e2b52c939ac950fba1d70dbd9fc3a1e6da37c7ef847b5c8682a2
-EBUILD paraview-5.8.0-r3.ebuild 6326 BLAKE2B 295a6de4ca4c7e7b22946a793d296fe54184a432a6fb66062c93ef8e3457de464f1532a416d458bff763350b5015d20b17120e5901c6659c2fe8efae9a09b005 SHA512 514dc686c2f5e69bfc5328cdaeeb7873c1214003bf036590d8f8f03959b8370477322c24d410a9b475cbe044717154edb21e840e99f4ad425f6aab3de20ea128
+DIST ParaView-v5.8.1.tar.xz 49822084 BLAKE2B 1b99392a85c19fdc02f8f9f0f055fb7efd8a0b17eedfd84005d1af9b170c34ec4eedb25700f91c3a2241ee80e271fe1e744e3a729b7726deb8f9c7a9fd2e4191 SHA512 94861c01da2f98c47e7453d072a4de34a7f52f5df280a8745b44d58d8d6a1dba42a15d0bac31895bbe25f23d993d4d356e5af1f8415137e289afd60570070248
+EBUILD paraview-5.8.0-r3.ebuild 6343 BLAKE2B d3136156a23fd16e9a8f7fdfaf1f413819ea710930834bc530934f58248b7909e41bdf49f825d7931960053c76b088016221aa4618b4313ebabe8ec3f80ccc8c SHA512 a4ae8e081d988d834569107f4295a3a9becc3f12b9c9739280097a75543c72ccf6eb2ccee00fb892fbee64bc578d09a454c57b12bc0b63f051d0825753c453fb
+EBUILD paraview-5.8.1.ebuild 6297 BLAKE2B 44274ab639f45e19cfafe884c3cc28a224b0d88e4dc1cd3dccc4fbca21300a0384c0944a828390248dc4cd619115ad75737c5636b4f6ef505fe88733fb4088d5 SHA512 23c2b09aa00a653583297d76bd5784e9309008a37e53fbf7f14407f04ea664910c60aeaded4b9deb07b5736381b11da5fb73f9697c89b382a794f329bd7dbb78
 MISC metadata.xml 873 BLAKE2B 3f48aa66e19a19e8de7959d58248e7d4d7b6ca0f9dd98b869088f15bfc483dec486c89bdd448368eb0b385735ca8cfb3462a86e93fecb13383366ced4ead4ebd SHA512 871830a5157bc1f8803cf4dbd4797a58bd87d6338a3eaa21662a2e789412bf746c30f817a485a26b4b14fa578aa15b391efe76c920db7b1c2a2f74f9bf3eceb2
diff --git a/sci-visualization/paraview/paraview-5.8.0-r3.ebuild b/sci-visualization/paraview/paraview-5.8.0-r3.ebuild
index ed78dca47642..c0ed9ef07d46 100644
--- a/sci-visualization/paraview/paraview-5.8.0-r3.ebuild
+++ b/sci-visualization/paraview/paraview-5.8.0-r3.ebuild
@@ -83,6 +83,7 @@ RDEPEND="
 		dev-qt/qthelp:5
 		dev-qt/qtopengl:5[-gles2-only]
 		dev-qt/qtsql:5
+		dev-qt/qtsvg:5
 		dev-qt/qttest:5
 		dev-qt/qtx11extras:5
 		dev-qt/qtxmlpatterns:5
diff --git a/sci-visualization/paraview/paraview-5.8.1.ebuild b/sci-visualization/paraview/paraview-5.8.1.ebuild
new file mode 100644
index 000000000000..fec2161a4d14
--- /dev/null
+++ b/sci-visualization/paraview/paraview-5.8.1.ebuild
@@ -0,0 +1,254 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+inherit cmake-utils desktop gnome2-utils python-single-r1 qmake-utils toolchain-funcs
+
+MAIN_PV=$(ver_cut 0-1)
+MAJOR_PV=$(ver_cut 1-2)
+MY_P="ParaView-v${PV}"
+
+DESCRIPTION="Powerful scientific data visualization application"
+HOMEPAGE="https://www.paraview.org"
+SRC_URI="https://www.paraview.org/files/v${MAJOR_PV}/${MY_P}.tar.xz"
+
+LICENSE="paraview GPL-2"
+KEYWORDS="~amd64 ~x86"
+SLOT="0"
+IUSE="boost cg coprocessing development doc examples ffmpeg mpi mysql nvcontrol openmp offscreen plugins python +qt5 +sqlite test tk +webengine"
+
+RESTRICT="mirror test"
+
+# "vtksqlite, needed by vtkIOSQL" and "vtkIOSQL, needed by vtkIOMySQL"
+REQUIRED_USE="
+	python? ( mpi ${PYTHON_REQUIRED_USE} )
+	mysql? ( sqlite )
+	webengine? ( qt5 )
+	qt5? ( sqlite )
+	?? ( offscreen qt5 )"
+
+RDEPEND="
+	app-arch/lz4
+	dev-libs/expat
+	dev-libs/jsoncpp:=
+	dev-libs/libxml2:2
+	dev-libs/protobuf:=
+	dev-libs/pugixml
+	media-libs/freetype
+	media-libs/glew:0
+	media-libs/libpng:0
+	media-libs/libtheora
+	media-libs/tiff:0=
+	sci-libs/cgnslib
+	sci-libs/hdf5:=[mpi=]
+	>=sci-libs/netcdf-4.2[hdf5]
+	>=sci-libs/netcdf-cxx-4.2:3
+	sys-libs/zlib
+	virtual/glu
+	virtual/jpeg:0
+	x11-libs/libX11
+	x11-libs/libXext
+	x11-libs/libXmu
+	x11-libs/libXt
+	coprocessing? (
+		dev-python/PyQt5
+		dev-qt/qtgui:5[-gles2-only]
+	)
+	ffmpeg? ( media-video/ffmpeg )
+	mpi? ( virtual/mpi[cxx,romio] )
+	mysql? ( dev-db/mysql-connector-c )
+	offscreen? ( >=media-libs/mesa-18.3.6[osmesa] )
+	!offscreen? ( virtual/opengl )
+	python? (
+		${PYTHON_DEPS}
+		$(python_gen_cond_dep '
+			dev-python/constantly[${PYTHON_MULTI_USEDEP}]
+			dev-python/incremental[${PYTHON_MULTI_USEDEP}]
+			dev-python/matplotlib[${PYTHON_MULTI_USEDEP}]
+			dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+			dev-python/pygments[${PYTHON_MULTI_USEDEP}]
+			dev-python/sip[${PYTHON_MULTI_USEDEP}]
+			dev-python/six[${PYTHON_MULTI_USEDEP}]
+			dev-python/twisted[${PYTHON_MULTI_USEDEP}]
+			dev-python/zope-interface[${PYTHON_MULTI_USEDEP}]
+			mpi? ( dev-python/mpi4py )
+			qt5? ( dev-python/PyQt5[opengl,${PYTHON_MULTI_USEDEP}] )
+		')
+	)
+	qt5? (
+		dev-qt/designer:5
+		dev-qt/qtgui:5[-gles2-only]
+		dev-qt/qthelp:5
+		dev-qt/qtopengl:5[-gles2-only]
+		dev-qt/qtsql:5
+		dev-qt/qtsvg:5
+		dev-qt/qttest:5
+		dev-qt/qtx11extras:5
+		dev-qt/qtxmlpatterns:5
+	)
+	sqlite? ( dev-db/sqlite:3 )
+	tk? ( dev-lang/tk:0= )
+	webengine? ( dev-qt/qtwebengine:5[widgets] )"
+DEPEND="${RDEPEND}
+	${PYTHON_DEPS}
+	boost? (
+		$(python_gen_cond_dep '
+			dev-libs/boost[mpi?,${PYTHON_MULTI_USEDEP}]
+		')
+	)
+	doc? ( app-doc/doxygen )"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.0.1-xdmf-cstring.patch
+	"${FILESDIR}"/${PN}-5.3.0-fix_buildsystem.patch
+	"${FILESDIR}"/${PN}-5.5.0-allow_custom_build_type.patch
+)
+
+CMAKE_MAKEFILE_GENERATOR="emake" #579474
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != "binary" ]] && use openmp && tc-check-openmp
+	use python && python-single-r1_pkg_setup
+	PVLIBDIR=$(get_libdir)/${PN}-${MAJOR_PV}
+}
+
+src_prepare() {
+
+	# Bug #661812
+	mkdir -p Plugins/StreamLinesRepresentation/doc || die
+
+	cmake-utils_src_prepare
+
+	# lib64 fixes
+	sed -i \
+		-e "s:/lib/python:/$(get_libdir)/python:g" \
+		VTK/ThirdParty/xdmf3/vtkxdmf3/CMakeLists.txt || die
+	sed -i \
+		-e "s:lib/paraview-:$(get_libdir)/paraview-:g" \
+		Remoting/Application/vtkInitializationHelper.cxx || die
+}
+
+src_configure() {
+	if use qt5; then
+		export QT_SELECT=qt5
+	fi
+
+	local mycmakeargs=(
+		-DCMAKE_INSTALL_LIBDIR="${PVLIBDIR}"
+		-UBUILD_SHARED_LIBS
+		-DPARAVIEW_BUILD_SHARED_LIBS=ON
+		-DCMAKE_VERBOSE_MAKEFILE=ON
+
+		-DVTK_DEFAULT_RENDER_WINDOW_OFFSCREEN=TRUE
+
+		-DVTK_USE_OGGTHEORA_ENCODER=TRUE
+
+		-DVTK_GROUP_ENABLE_Imaging=YES
+		-DVTK_GROUP_ENABLE_Rendering=YES
+		-DVTK_GROUP_ENABLE_StandAlone=YES
+		-DVTK_GROUP_ENABLE_Views=YES
+
+		# boost
+		-DVTK_MODULE_ENABLE_VTK_IOInfovis="$(usex boost YES NO)"
+
+		# coprocessing
+#         -DVTK_MODULE_ENABLE_ParaView_Catalyst="$(usex coprocessing YES NO)"
+
+		# doc
+		-DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION="$(usex doc)"
+
+		# examples
+		-DBUILD_EXAMPLES="$(usex examples)"
+
+		# ffmpeg
+		-DPARAVIEW_ENABLE_FFMPEG="$(usex ffmpeg)"
+		-DVTK_USE_FFMPEG_ENCODER="$(usex ffmpeg)"
+
+		# mpi
+		-DPARAVIEW_USE_MPI="$(usex mpi)"
+		-DXDMF_BUILD_MPI="$(usex mpi)"
+		-DVTK_GROUP_ENABLE_MPI="$(usex mpi YES NO)"
+
+		# mysql
+		-DVTK_MODULE_ENABLE_VTK_IOMySQL="$(usex mysql YES NO)"
+
+		# offscreen
+		-DVTK_USE_X="$(usex !offscreen)"
+		-DVTK_OPENGL_HAS_OSMESA="$(usex offscreen)"
+		-DVTK_OPENGL_HAS_OSMESA="$(usex offscreen)"
+
+		# plugins
+		-DPARAVIEW_PLUGINS_DEFAULT="$(usex plugins)"
+
+		# python
+		-DModule_pqPython="$(usex python)"
+		-DPARAVIEW_USE_PYTHON="$(usex python)"
+
+		# qt5
+		-DPARAVIEW_INSTALL_DEVELOPMENT_FILES="$(usex development)"
+		-DPARAVIEW_USE_QT="$(usex qt5)"
+		-DModule_pqPython="$(usex qt5 "$(usex python)" "off")"
+		-DVTK_USE_NVCONTROL="$(usex nvcontrol)"
+		-DVTK_GROUP_ENABLE_Qt="$(usex qt5 YES NO)"
+
+		# sqlite
+		-DVTK_MODULE_ENABLE_VTK_sqlite="$(usex sqlite YES NO)"
+
+		# test
+		-DBUILD_TESTING="$(usex test)"
+
+		# tk
+		-DVTK_USE_TK="$(usex tk)"
+		-DVTK_GROUP_ENABLE_Tk="$(usex tk YES NO)"
+
+		# webengine
+		-DPARAVIEW_USE_QTWEBENGINE="$(usex webengine)"
+		-DVTK_GROUP_ENABLE_Web="$(usex webengine YES NO)"
+	)
+
+	if use openmp; then
+		mycmakeargs+=( -DVTK_SMP_IMPLEMENTATION_TYPE=OpenMP )
+	fi
+
+	if use qt5; then
+		mycmakeargs+=(
+			-DOPENGL_gl_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGL.so
+			-DOPENGL_glu_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGLU.so
+			-DQT_MOC_EXECUTABLE="$(qt5_get_bindir)/moc"
+		)
+	fi
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+
+		# remove wrapper binaries and put the actual executable in place
+		for i in {paraview-config,pvserver,pvdataserver,pvrenderserver,pvbatch,pvpython,paraview}; do
+			if [ -f "${ED}"/usr/lib/"$i" ]; then
+				mv "${ED}"/usr/lib/"$i" "${ED}"/usr/bin/"$i" || die
+			fi
+		done
+
+		# set up the environment
+		echo "LDPATH=${EPREFIX}/usr/${PVLIBDIR}" > "${T}"/40${PN} || die
+		doenvd "${T}"/40${PN}
+
+		newicon "${S}"/Clients/ParaView/pvIcon-96x96.png paraview.png
+		make_desktop_entry paraview "Paraview" paraview
+
+		use python && python_optimize "${D}"/usr/$(get_libdir)/${PN}-${MAJOR_PV}
+	}
+
+	pkg_postinst() {
+		xdg_icon_cache_update
+	}
+
+	pkg_postrm() {
+		xdg_icon_cache_update
+	}
diff --git a/sci-visualization/pythonprop/Manifest b/sci-visualization/pythonprop/Manifest
index 59b736acd30f..7560f48393d3 100644
--- a/sci-visualization/pythonprop/Manifest
+++ b/sci-visualization/pythonprop/Manifest
@@ -1,3 +1,3 @@
 DIST pythonprop-0.29.tar.gz 586118 BLAKE2B ac018f147206b59fbd2295e6e72d6e1a801d6456d8a9784bdb2511b0d9dcecfa455363826680051c90e0fcc83fdc95a16c91df120efb2e70456958276967dec7 SHA512 2fbbffedc9e010fdebeed7a84d23c599a2532ae0b67e6a2ba2da6bea0dc0496cb1f71ac54650285ed35196f33e689fc3d967e3bd7c4fb16832fc484a6b777fcb
-EBUILD pythonprop-0.29.ebuild 1211 BLAKE2B 8f26df470b0e61dd13c4ffbfbbed3fc055b801f3d1a013712f4ea7f396b876de7a2ddc9a77555c4f98d0f9dacd638fee577cff4e5a2c654c4347a6ce67f9d299 SHA512 f261cca0fc45c9984b20c5467c58a5fe204a1cf293f3fad0f7ea71e763a5b84b5f6d88deda9934ab1327cf500413bfe713c1fe80f66115c2a94f9148480e9e27
+EBUILD pythonprop-0.29.ebuild 1213 BLAKE2B dcd7505a29eff594c3acb8010f16a3bbd452bbc34f356bf46dd7a9be8da5bf407eec949fcafb5d2ed625e4424a91fd06b5679654e26f23c6913c1d5ef56f5ebb SHA512 ad5db2707233a446de9fbe10da92c1a60852b89cff66e96fbc1f1300d7ec77d713c23333ac2679325b79ba650d8abaeca683d49722face203f594978f6ec1b0f
 MISC metadata.xml 459 BLAKE2B dbf50a4c24f4a4dc0b27d087e0f0942ef7826ed8fcb858fd9744371f906bc5e1ff727a37db157705f5ebf630e744ce21bf9fc578e59eaaa6170215066b85a681 SHA512 23f2836015bd753b0a4957be9efa3347d2f5c6b79ec041465120aa9e8e6565397ba343ea8a393273eaab3c146b8555914b4a1e8bba2a0c4596bc49833388e8f1
diff --git a/sci-visualization/pythonprop/pythonprop-0.29.ebuild b/sci-visualization/pythonprop/pythonprop-0.29.ebuild
index b0d9d7870471..372c14f28f46 100644
--- a/sci-visualization/pythonprop/pythonprop-0.29.ebuild
+++ b/sci-visualization/pythonprop/pythonprop-0.29.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_COMPAT=( python3_{6,7,8} )
 
 inherit autotools python-single-r1