gentoo resync : 17.06.2021

4 files changed, 8 insertions, 359 deletions

diff --git a/sci-visualization/Manifest.gz b/sci-visualization/Manifest.gz
index 928214b13906..71fd5dca986d 100644
--- a/sci-visualization/Manifest.gz
+++ b/sci-visualization/Manifest.gz
diff --git a/sci-visualization/fityk/Manifest b/sci-visualization/fityk/Manifest
index a29b4c50a719..df517aae2f15 100644
--- a/sci-visualization/fityk/Manifest
+++ b/sci-visualization/fityk/Manifest
@@ -1,5 +1,4 @@
-AUX fityk-1.3.1-c++17.patch 12771 BLAKE2B 72c94df37767a17abe241bca6cfd3d62ca55902f1c1f4923a0cd268aa85366188bba849a03107dc953596c5c836a4e32819fd089dd07f8ceff33aad2adfde251 SHA512 bfacfc05f7d33ccc8648329c0b9c3ad72b8ad9b9a915c585128f681cf973fcb5ba8364a25067a534ac0a880bca6d4a3a733f9cba6d3d6127188bf3ffbd016e65
 AUX fityk-1.3.1-fix-gtk3.patch 887 BLAKE2B 3cb5efcda7d696c491bc5d4b4215714b19fc0e876cc59c5b37999c6950e1a26ab979cf0a4c50bd7cbe4a3bde26b4b394b07819381a6b11eff957f375a5d49f90 SHA512 a835ad7ef3ae084ac11195924eb4305cf1dcb8282fa393719c7bfd4983fcf51143744954051ee5b0dfc7956322890d1391ee5c4e3b0fcd27924cc042db5a0cdb
 DIST fityk-1.3.1.tar.bz2 1518937 BLAKE2B 6eb13646e1b5cf3fb0763bcf3e91a1877d89f14f1b986f1065fd27052e7110b357c99431a326a6c1fa2ba002300912b922cd3d5589ac5da367d2fbcee209f9a2 SHA512 4a7a65691af8b8d5b47461133b7870ea21ea04ac2ee8ee5714a6b9bab2f072baa6b5d8bf011baba09c62a7ce2dc9d60f3040cc6fdb77dc498b6e03a24fc0fe08
-EBUILD fityk-1.3.1-r101.ebuild 1192 BLAKE2B ae3186a4293cb255425d3ca67bccf7e51176e95d7289ebd319832f9d200678ba38510b49f1d200d6ed911ab476554b67ad9edcfe1720a013a6ab6e099b24e4da SHA512 72673ebb78b8e9c17440c193312d62c928a2e7f69a69a4bdf6417829f24a325ebc9f0846b111154ea18de6f2b3d2e451b50b79745566627fd2531d8e0127010a
+EBUILD fityk-1.3.1-r102.ebuild 1340 BLAKE2B 998740e227b596f9a71a42debde82d05f18347ec7310cffad14bab84367da40412ce170aa93b0b14bc87d7a729695c5e936b55d130636f3b129ca774571498b7 SHA512 cabb30710dac2a0b9ea93db7a5a33cbb1a885b57c887da86b5cc6c12e1fc720f1d2a576eb834bb2eb6b12ed952d159487b0b403e184a36dda27c5f830b94f1be
 MISC metadata.xml 1378 BLAKE2B a6b73be959353e2a764d5c39ae13c4fe1bc38c5c0ea5a3c2557e32825077e13d0a97504f8d79e338a65803bc98326fe25cb7e86d3aaa8c93c5d9bdce30cbec90 SHA512 38e516a5e0ec249d3ed4e54d4780830e1b53994e9dc1999c664b2f37aac0247df780522e7b25c124ffb0d9766d1292871ec0f9a238c2b3aa9994cef3581befe6
diff --git a/sci-visualization/fityk/files/fityk-1.3.1-c++17.patch b/sci-visualization/fityk/files/fityk-1.3.1-c++17.patch
deleted file mode 100644
index 66c43207fbfb..000000000000
--- a/sci-visualization/fityk/files/fityk-1.3.1-c++17.patch
+++ /dev/null
@@ -1,352 +0,0 @@
-Backport from
-https://github.com/wojdyr/fityk/pull/38
-
---- a/fityk/fityk.cpp
-+++ b/fityk/fityk.cpp
-@@ -129,8 +129,7 @@
-     delete p_;
- }
- 
--void Fityk::execute(string const& s)  throw(SyntaxError, ExecuteError,
--                                            ExitRequestedException)
-+void Fityk::execute(string const& s)
- {
-     try {
-         priv_->parse_and_execute_line(s);
-@@ -139,8 +138,7 @@
-     CATCH_EXECUTE_ERROR
- }
- 
--string Fityk::get_info(string const& s, int dataset)  throw(SyntaxError,
--                                                            ExecuteError)
-+string Fityk::get_info(string const& s, int dataset)
- {
-     try {
-         string result;
-@@ -152,8 +150,7 @@
-     return "";
- }
- 
--realt Fityk::calculate_expr(string const& s, int dataset)  throw(SyntaxError,
--                                                                  ExecuteError)
-+realt Fityk::calculate_expr(string const& s, int dataset)
- {
-     try {
-         Lexer lex(s.c_str());
-@@ -209,7 +206,7 @@
-     return priv_->mgr.functions()[n];
- }
- 
--vector<Func*> Fityk::get_components(int dataset, char fz)  throw(ExecuteError)
-+vector<Func*> Fityk::get_components(int dataset, char fz)
- {
-     const Model *model = priv_->dk.get_model(hd(priv_, dataset));
-     const vector<int>& indexes = model->get_fz(fz).idx;
-@@ -220,7 +217,7 @@
-     return ret;
- }
- 
--realt Fityk::get_model_value(realt x, int dataset)  throw(ExecuteError)
-+realt Fityk::get_model_value(realt x, int dataset)
- {
-     try {
-         return priv_->dk.get_model(hd(priv_, dataset))->value(x);
-@@ -230,7 +227,6 @@
- }
- 
- vector<realt> Fityk::get_model_vector(vector<realt> const& x, int dataset)
--                                                          throw(ExecuteError)
- {
-     vector<realt> xx(x);
-     vector<realt> yy(x.size(), 0.);
-@@ -241,7 +237,7 @@
-     return yy;
- }
- 
--const Var* Fityk::get_variable(string const& name)  throw(ExecuteError)
-+const Var* Fityk::get_variable(string const& name)
- {
-     try {
-         string vname;
-@@ -274,7 +270,6 @@
- }
- 
- void Fityk::load(LoadSpec const& spec, int dataset)
--                     throw(ExecuteError)
- {
-     if (dataset == DEFAULT_DATASET)
-         dataset = priv_->dk.default_idx();
-@@ -290,7 +285,7 @@
-                       vector<realt> const& x,
-                       vector<realt> const& y,
-                       vector<realt> const& sigma,
--                      string const& title)     throw(ExecuteError)
-+                      string const& title)
- {
-     try {
-         priv_->dk.data(dataset)->load_arrays(x, y, sigma, title);
-@@ -299,7 +294,6 @@
- }
- 
- void Fityk::add_point(realt x, realt y, realt sigma, int dataset)
--                                                          throw(ExecuteError)
- {
-     try {
-         priv_->dk.data(hd(priv_, dataset))->add_one_point(x, y, sigma);
-@@ -307,7 +301,7 @@
-     CATCH_EXECUTE_ERROR
- }
- 
--vector<Point> const& Fityk::get_data(int dataset)  throw(ExecuteError)
-+vector<Point> const& Fityk::get_data(int dataset)
- {
-     static const vector<Point> empty;
-     try {
-@@ -335,23 +329,21 @@
- }
- 
- void Fityk::set_option_as_string(const string& opt, const string& val)
--                                                            throw(ExecuteError)
- {
-     priv_->mutable_settings_mgr()->set_as_string(opt, val);
- }
- 
- void Fityk::set_option_as_number(const string& opt, double val)
--                                                            throw(ExecuteError)
- {
-     priv_->mutable_settings_mgr()->set_as_number(opt, val);
- }
- 
--string Fityk::get_option_as_string(const string& opt) const  throw(ExecuteError)
-+string Fityk::get_option_as_string(const string& opt) const
- {
-     return priv_->settings_mgr()->get_as_string(opt, /*quote_str=*/false);
- }
- 
--double Fityk::get_option_as_number(const string& opt) const  throw(ExecuteError)
-+double Fityk::get_option_as_number(const string& opt) const
- {
-     return priv_->settings_mgr()->get_as_number(opt);
- }
-@@ -366,7 +358,7 @@
-     return priv_->ui()->get_input_from_user(prompt);
- }
- 
--realt Fityk::get_wssr(int dataset)  throw(ExecuteError)
-+realt Fityk::get_wssr(int dataset)
- {
-     try {
-         return get_wssr_or_ssr(priv_, dataset, true);
-@@ -375,7 +367,7 @@
-     return 0.;
- }
- 
--realt Fityk::get_ssr(int dataset)  throw(ExecuteError)
-+realt Fityk::get_ssr(int dataset)
- {
-     try {
-         return get_wssr_or_ssr(priv_, dataset, false);
-@@ -384,7 +376,7 @@
-     return 0.;
- }
- 
--realt Fityk::get_rsquared(int dataset)  throw(ExecuteError)
-+realt Fityk::get_rsquared(int dataset)
- {
-     try {
-         if (dataset == ALL_DATASETS) {
-@@ -402,7 +394,7 @@
-     return 0.;
- }
- 
--int Fityk::get_dof(int dataset)  throw(ExecuteError)
-+int Fityk::get_dof(int dataset)
- {
-     try {
-         return priv_->get_fit()->get_dof(get_datasets_(priv_, dataset));
-@@ -412,7 +404,6 @@
- }
- 
- vector<vector<realt> > Fityk::get_covariance_matrix(int dataset)
--                                                           throw(ExecuteError)
- {
-     try {
-         vector<Data*> dss = get_datasets_(priv_, dataset);
---- a/fityk/fityk.h
-+++ b/fityk/fityk.h
-@@ -118,10 +118,8 @@
- 
-     virtual const std::string& get_template_name() const = 0;
-     virtual std::string get_param(int n) const = 0;
--    virtual const std::string& var_name(const std::string& param) const
--                                                    throw(ExecuteError) = 0;
--    virtual realt get_param_value(const std::string& param) const
--                                                    throw(ExecuteError) = 0;
-+    virtual const std::string& var_name(const std::string& param) const = 0;
-+    virtual realt get_param_value(const std::string& param) const = 0;
-     virtual realt value_at(realt x) const = 0;
- protected:
-     Func(const std::string name_) : name(name_) {}
-@@ -177,26 +175,23 @@
-     // @{
- 
-     /// execute command; throws exception on error
--    void execute(std::string const& s) throw(SyntaxError, ExecuteError,
--                                             ExitRequestedException);
-+    void execute(std::string const& s);
- 
- 
-     /// load data from file (path should be ascii or utf8, col=0 is index)
--    void load(LoadSpec const& spec, int dataset=DEFAULT_DATASET)
--                  throw(ExecuteError);
-+    void load(LoadSpec const& spec, int dataset=DEFAULT_DATASET);
-     void load(std::string const& path, int dataset=DEFAULT_DATASET)
--      throw(ExecuteError) { load(LoadSpec(path), dataset); }
-+      { load(LoadSpec(path), dataset); }
- 
-     /// load data from arrays
-     void load_data(int dataset,
-                    std::vector<realt> const& x,
-                    std::vector<realt> const& y,
-                    std::vector<realt> const& sigma,
--                   std::string const& title="")  throw(ExecuteError);
-+                   std::string const& title="");
- 
-     /// add one data point to dataset
--    void add_point(realt x, realt y, realt sigma, int dataset=DEFAULT_DATASET)
--                                                     throw(ExecuteError);
-+    void add_point(realt x, realt y, realt sigma, int dataset=DEFAULT_DATASET);
- 
-     // @}
- 
-@@ -220,14 +215,10 @@
- 
-     /// @name settings
-     // @{
--    void set_option_as_string(const std::string& opt, const std::string& val)
--                                                         throw(ExecuteError);
--    void set_option_as_number(const std::string& opt, double val)
--                                                         throw(ExecuteError);
--    std::string get_option_as_string(const std::string& opt) const
--                                                         throw(ExecuteError);
--    double get_option_as_number(const std::string& opt) const
--                                                         throw(ExecuteError);
-+    void set_option_as_string(const std::string& opt, const std::string& val);
-+    void set_option_as_number(const std::string& opt, double val);
-+    std::string get_option_as_string(const std::string& opt) const;
-+    double get_option_as_number(const std::string& opt) const;
-     // @}
- 
-     /// @name input/output
-@@ -253,12 +244,10 @@
-     // @{
- 
-     /// return output of the info command
--    std::string get_info(std::string const& s, int dataset=DEFAULT_DATASET)
--                                            throw(SyntaxError, ExecuteError);
-+    std::string get_info(std::string const& s, int dataset=DEFAULT_DATASET);
- 
-     /// return expression value, similarly to the print command
--    realt calculate_expr(std::string const& s, int dataset=DEFAULT_DATASET)
--                                            throw(SyntaxError, ExecuteError);
-+    realt calculate_expr(std::string const& s, int dataset=DEFAULT_DATASET);
- 
-     //(planned)
-     /// returns dataset titles
-@@ -273,8 +262,7 @@
-     int get_default_dataset() const;
- 
-     /// get data points
--    std::vector<Point> const& get_data(int dataset=DEFAULT_DATASET)
--                                                         throw(ExecuteError);
-+    std::vector<Point> const& get_data(int dataset=DEFAULT_DATASET);
- 
-     /// returns number of simple-variables (parameters that can be fitted)
-     int get_parameter_count() const;
-@@ -286,7 +274,7 @@
-     std::vector<Var*> all_variables() const;
- 
-     /// returns variable $name
--    const Var* get_variable(std::string const& name)  throw(ExecuteError);
-+    const Var* get_variable(std::string const& name);
- 
-     /// returns all %functions
-     std::vector<Func*> all_functions() const;
-@@ -295,17 +283,14 @@
-     const Func* get_function(const std::string& name) const;
- 
-     /// returns %functions used in dataset
--    std::vector<Func*> get_components(int dataset=DEFAULT_DATASET, char fz='F')
--                                                         throw(ExecuteError);
-+    std::vector<Func*> get_components(int dataset=DEFAULT_DATASET, char fz='F');
- 
-     /// returns the value of the model for a given dataset at x
--    realt get_model_value(realt x, int dataset=DEFAULT_DATASET)
--                                                         throw(ExecuteError);
-+    realt get_model_value(realt x, int dataset=DEFAULT_DATASET);
- 
-     /// multiple point version of the get_model_value()
-     std::vector<realt>
--    get_model_vector(std::vector<realt> const& x, int dataset=DEFAULT_DATASET)
--                                                         throw(ExecuteError);
-+    get_model_vector(std::vector<realt> const& x, int dataset=DEFAULT_DATASET);
- 
-     /// get coordinates of rectangle set by the plot command
-     /// side is one of L(eft), R(ight), T(op), B(ottom)
-@@ -317,20 +302,20 @@
-     // @{
- 
-     /// get WSSR for given dataset or for all datasets
--    realt get_wssr(int dataset=ALL_DATASETS)  throw(ExecuteError);
-+    realt get_wssr(int dataset=ALL_DATASETS);
- 
-     /// get SSR for given dataset or for all datasets
--    realt get_ssr(int dataset=ALL_DATASETS)  throw(ExecuteError);
-+    realt get_ssr(int dataset=ALL_DATASETS);
- 
-     /// get R-squared for given dataset or for all datasets
--    realt get_rsquared(int dataset=ALL_DATASETS)  throw(ExecuteError);
-+    realt get_rsquared(int dataset=ALL_DATASETS);
- 
-     /// get number of degrees-of-freedom for given dataset or for all datasets
--    int get_dof(int dataset=ALL_DATASETS)  throw(ExecuteError);
-+    int get_dof(int dataset=ALL_DATASETS);
- 
-     /// get covariance matrix (for given dataset or for all datasets)
-     std::vector<std::vector<realt> >
--    get_covariance_matrix(int dataset=ALL_DATASETS)  throw(ExecuteError);
-+    get_covariance_matrix(int dataset=ALL_DATASETS);
-     // @}
- 
-     /// UiApi contains functions used by CLI and may be used to implement
---- a/fityk/func.cpp
-+++ b/fityk/func.cpp
-@@ -197,7 +197,7 @@
-     return n;
- }
- 
--realt Function::get_param_value(const string& param) const  throw(ExecuteError)
-+realt Function::get_param_value(const string& param) const
- {
-     realt a;
-     if (!param.empty() && islower(param[0]))
---- a/fityk/func.h
-+++ b/fityk/func.h
-@@ -86,8 +86,7 @@
- #pragma clang diagnostic push
- #pragma clang diagnostic ignored "-Wdeprecated"
- #endif
--    virtual realt get_param_value(const std::string& param) const
--                            throw(ExecuteError); // exc. spec. is used by SWIG
-+    virtual realt get_param_value(const std::string& param) const;
- 
-     realt numarea(realt x1, realt x2, int nsteps) const;
- 
-@@ -101,7 +100,6 @@
-     // implementation of members of Func
-     virtual const std::string& get_template_name() const { return tp_->name; }
-     virtual const std::string& var_name(const std::string& param) const
--                        throw(ExecuteError) // exc. spec. is used by SWIG
-                         { return used_vars_.get_name(get_param_nr(param)); }
- #ifdef __clang__
- #pragma clang diagnostic pop
diff --git a/sci-visualization/fityk/fityk-1.3.1-r101.ebuild b/sci-visualization/fityk/fityk-1.3.1-r102.ebuild
index 541fb7bba06b..cec78adbde05 100644
--- a/sci-visualization/fityk/fityk-1.3.1-r101.ebuild
+++ b/sci-visualization/fityk/fityk-1.3.1-r102.ebuild
@@ -6,7 +6,7 @@ EAPI=7
 LUA_COMPAT=( lua5-{1..3} )
 WX_GTK_VER=3.0-gtk3
 
-inherit lua-single wxwidgets xdg
+inherit flag-o-matic lua-single wxwidgets xdg
 
 DESCRIPTION="General-purpose nonlinear curve fitting and data analysis"
 HOMEPAGE="https://fityk.nieto.pl/"
@@ -29,12 +29,14 @@ RDEPEND="${DEPEND}
 	gnuplot? ( sci-visualization/gnuplot )"
 BDEPEND="dev-lang/swig"
 
-PATCHES=(
-	"${FILESDIR}"/${P}-fix-gtk3.patch
-	"${FILESDIR}"/${P}-c++17.patch # bug 787317
-)
+PATCHES=( "${FILESDIR}"/${P}-fix-gtk3.patch )
 
 src_configure() {
+	# codebase relies on dynamic exception specifications
+	# for SWIG, no point in trying to fix at this point.
+	# https://github.com/wojdyr/fityk/pull/38
+	append-cxxflags -std=c++14
+
 	use wxwidgets && setup-wxwidgets
 
 	econf \