gentoo auto-resync : 28:04:2024 - 23:59:44

6 files changed, 35 insertions, 45 deletions

diff --git a/sci-visualization/Manifest.gz b/sci-visualization/Manifest.gz
index 45dad8bb3442..a3ae0f34ee2f 100644
--- a/sci-visualization/Manifest.gz
+++ b/sci-visualization/Manifest.gz
diff --git a/sci-visualization/circos/Manifest b/sci-visualization/circos/Manifest
index 9d224ce558ef..0c4ca8d25ef0 100644
--- a/sci-visualization/circos/Manifest
+++ b/sci-visualization/circos/Manifest
@@ -1,5 +1,3 @@
-DIST circos-0.55.tgz 10163948 BLAKE2B b4dc821e99ea4ea072b6b2819f257eba920b133f4f4a10ddd119b073c067ba80dff1ffa1377d5b888098d25cf2eea8c92879444bd6a493b3743ab869b45f5302 SHA512 3ebad082acd96b27281e6fcd996fb79022d982a93db59e1f3589a341df7f9855d7554fb92c88c41dc4679e7273d11c0372285a4059ec14a77f11d1d4014db9c1
 DIST circos-0.69-9.tgz 29794907 BLAKE2B 615f3eacdb83ae68c014936b96c1e76280b546dee59bfc1d44aa4f1c09d9962946bd6329107dba6daac4153da5c1e2ac11cf3c658e35b4e9e92184b028144b60 SHA512 2ad8f3def2716a6055deb36c1d44126ce96e23d8fa76c6256b6586ed3bdd641245d885f42424279e8753d9a15385ad73f9f823e27119f16e0be8fc0a01207f37
-EBUILD circos-0.55-r1.ebuild 930 BLAKE2B d770b6f34df968b9817f1222a999f9f7c55a2754329854a019718ef12c8efd4d855580325147c82f2983e6af592151b4d39c7915be80ccf36220e7fa1d4c3d21 SHA512 15d004ce7c0fe3d9f9039e9a9dbb664bf988cd8b7a3db7f8185069227879f594cca779ccec6c8864fd81b6e13bf1d7f587ef3abd273b3d41d95d94c5f4d5e1fd
 EBUILD circos-0.69.9.ebuild 1141 BLAKE2B a60fd5fb32715e070f8427c2aacabacf429e9b207883506d069203050c4caaa2ced7b6682296f811e619c41836b1e3011590d0204b22a4cad746cb46fc913f46 SHA512 83384bccf1840809c193c739f815ec1740e17389ec0aa2c4db4edf964543f6c0c20dbc49c8c1102b623646d675686b67b3dfb50742591f3e89d24b6975c6c17a
 MISC metadata.xml 704 BLAKE2B 1f48451e1a2f697d7f05dd569eda5796ec82d322bda6e6c1086411eac50d9ad6761fb25de2264866f9cf5543b1724173fb557927c25a299b96c86c4090d354e9 SHA512 472a9f93c6529b30c4b0f502cb3c498bcf1963d12dffc46d6155368675b20f926ed874a7e0ac4efecb5fd0dd815fc6247ac13de8348ac54cdcde5dd5387921bd
diff --git a/sci-visualization/circos/circos-0.55-r1.ebuild b/sci-visualization/circos/circos-0.55-r1.ebuild
deleted file mode 100644
index bfac5b3544a9..000000000000
--- a/sci-visualization/circos/circos-0.55-r1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Circular layout visualization of genomic and other data"
-HOMEPAGE="http://mkweb.bcgsc.ca/circos/"
-SRC_URI="http://mkweb.bcgsc.ca/circos/distribution/${P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND="dev-perl/Config-General
-	dev-perl/GD
-	dev-perl/Math-Bezier
-	dev-perl/Math-Round
-	dev-perl/Math-VecStat
-	dev-perl/Params-Validate
-	dev-perl/Readonly
-	dev-perl/Regexp-Common
-	>=dev-perl/Set-IntSpan-1.11
-	dev-perl/Graphics-ColorObject
-	dev-perl/List-MoreUtils"
-RDEPEND="${DEPEND}"
-
-src_install() {
-	insinto /opt/${PN}
-	doins -r */
-
-	exeinto /opt/${PN}/bin
-	doexe bin/circos bin/gddiag
-
-	dosym /opt/${PN}/bin/circos /usr/bin/circos
-
-	einstalldocs
-	local d
-	while IFS="" read -d $'\0' -r d; do
-		dodoc "${d}"
-	done < <(find * -maxdepth 0 -type f -print0)
-}
diff --git a/sci-visualization/fig2sxd/Manifest b/sci-visualization/fig2sxd/Manifest
index 1763077b89d8..aa33fbbcfd68 100644
--- a/sci-visualization/fig2sxd/Manifest
+++ b/sci-visualization/fig2sxd/Manifest
@@ -1,4 +1,6 @@
 AUX fig2sxd-0.20-phony-check.patch 338 BLAKE2B 6106c5937dd273a521e494b255269ef887c26f754e0387609cf2adf7530cce58748179f59633245bfca3e828fd05f29c7e321c700a23fe7bc735dc221443dba8 SHA512 d4907c3a38a055ab1807a5fd6aefa85efedefb5a8ecab3fa0b7b57ae16c7a4e692e8a101ff61b6edb6ac833ae051ac853f79d4428398b5e048882e201c1d3f7a
+DIST fig2sxd-v0.23.tar.bz2 799014 BLAKE2B 299936b44dbfdb7b1506bcc164982f96aef078eeba3739125dc0f14644ab791e5d6b889ace5293e601481f6e57b3db25c7759e670b3ee02778b88c623a027cbe SHA512 5cc206d33b2495257111868ad75794b5625d8a43234e7deb70f566c70e2ee45a11e2258281416ec1c76730d5c456d58712915b19394c4d65e59325de92819cf1
 DIST fig2sxd_0.22.1.orig.tar.gz 26474 BLAKE2B b6d131f37edca2c810bd7366253f70dac4448b1d1504d15e82751b97c8dd8c8f686128b4bac26290902eb93bb833dc926e28901f9d173108e476f1b924f37699 SHA512 cc407f68e1d82f05566cce8d19bc3f64f4b39c338629b393d3c3d7770c6c69499943c247ddc9bebf1193bab6c4896d28c3b771ed29cfa751a0b6184847a0fc4a
 EBUILD fig2sxd-0.22.1.ebuild 680 BLAKE2B 8deeb09cdc49f3d317d31777e221f04a8577d383e8057bce1caafa0bb79767c50204da0528867aac033f899f01edb8c6d8b1467c0220354f6d1e012dedbedd63 SHA512 7ba47480d3a9bc31be07142782eec5bb0dc3701152a602df472bab0365ce59749d8db98c12fa00de8889072f792caebe301e71a8b8329128f300faa3e091ce8f
-MISC metadata.xml 341 BLAKE2B 57d8ab5d3fff1de363bb59cd758282cc0e33c903bdb7de0b209558ba2b134e2db698b24c2b8fc797fa77e1aa0b6b9703bbb2982f7d77ecb4e4e6ada2fea16faf SHA512 7a4bc0d060475c5ec447327fbd337e1a9c759f8ef5b5181ae7958ddbda6a5fa179cb9ba40ad0e9c0c74929c4426d8122d56b05f1d0cfd2e0a709e9925ffe3165
+EBUILD fig2sxd-0.23.ebuild 727 BLAKE2B 64542517c92c3dc7df5511641895aa2bb06a2382eb9cce3110713899f67a64499a63411bec6049e2e8cce64b59afeb303af2deed0cf2954fb7a72a7c95f8f936 SHA512 dcea2760af68864f45ccddde9bdf1e0493b93db4a753f2feaeee64dd98ed6a33cef22b79f7421b0331e8b3fa62c29a350cc255c6cf131e5f650f6d52b96999de
+MISC metadata.xml 401 BLAKE2B f3fcaacd319f5d874e0fe5a525e4f2f62d985ae59e9be5ff928c2aec0d469f8016e023571727bebd5a135cf214f1bc0b2bbe43fef40be8397056c5485715bea7 SHA512 9f3df0f43551c357173f951ffea26d89d5783c86d86895a9ee29c3de9fb7eeb4b3a01a1e61b7d7e98717de7f8d4cdd3028600936b4b459210c127e8921bde032
diff --git a/sci-visualization/fig2sxd/fig2sxd-0.23.ebuild b/sci-visualization/fig2sxd/fig2sxd-0.23.ebuild
new file mode 100644
index 000000000000..f1f528a263fa
--- /dev/null
+++ b/sci-visualization/fig2sxd/fig2sxd-0.23.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit toolchain-funcs
+
+DESCRIPTION="Utility to convert files in xfig format to OpenOffice.org Draw format"
+HOMEPAGE="https://gitlab.com/acfbuerger/fig2sxd"
+SRC_URI="https://gitlab.com/acfbuerger/fig2sxd/-/archive/v${PV}/${PN}-v${PV}.tar.bz2"
+S=${WORKDIR}/${PN}-v${PV}
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+
+DEPEND="sys-libs/zlib:="
+RDEPEND="${DEPEND}"
+
+DOCS=( README.md changelog )
+PATCHES=( "${FILESDIR}"/${PN}-0.20-phony-check.patch )
+
+src_compile() {
+	emake CXXFLAGS="${CXXFLAGS}" CXX="$(tc-getCXX)"
+}
+
+src_install() {
+	dobin ${PN}
+	doman ${PN}.1
+	einstalldocs
+}
diff --git a/sci-visualization/fig2sxd/metadata.xml b/sci-visualization/fig2sxd/metadata.xml
index 456f8bb98f66..170cb523c066 100644
--- a/sci-visualization/fig2sxd/metadata.xml
+++ b/sci-visualization/fig2sxd/metadata.xml
@@ -7,5 +7,6 @@
   </maintainer>
   <upstream>
     <remote-id type="sourceforge">fig2sxd</remote-id>
+    <remote-id type="gitlab">acfbuerger/fig2sxd</remote-id>
   </upstream>
 </pkgmetadata>